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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 01, 2011 |
| Title |
NimbleGen Pfalciparum 720K 1.0 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Plasmodium falciparum |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's web site www.nimblegen.com
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| |
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| Description |
PlasmoDB v5.5 P.falciparum genome
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| |
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| Submission date |
Mar 31, 2011 |
| Last update date |
Oct 13, 2011 |
| Contact name |
Michael Ferdig |
| E-mail(s) |
ferdig.1@nd.edu
|
| Phone |
(574)631-9973
|
| Organization name |
University of Notre Dame
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| Department |
Biological Sciences
|
| Lab |
Ferdig Lab
|
| Street address |
280 Galvin Life Science
|
| City |
Notre Dame |
| State/province |
IN |
| ZIP/Postal code |
46556 |
| Country |
USA |
| |
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| Samples (386)
|
GSM699993, GSM699994, GSM699995, GSM699996, GSM699997, GSM699998
GSM699999, GSM700000, GSM700001, GSM700002, GSM700003, GSM700004, GSM700005, GSM700006, GSM700007, GSM700008, GSM700009, GSM700010, GSM700011, GSM700012, GSM700013, GSM700014, GSM700015, GSM700016, GSM700017, GSM700018, GSM700019, GSM700020, GSM700021, GSM700022, GSM700023, GSM700024, GSM700025, GSM700026, GSM700027, GSM700028, GSM700029, GSM700030, GSM700031, GSM700032, GSM700033, GSM700034, GSM700035, GSM700036, GSM818073, GSM818074, GSM818075, GSM818076, GSM818077, GSM818078, GSM818079, GSM818080, GSM818081, GSM818082, GSM818083, GSM818084, GSM818085, GSM818086, GSM818087, GSM818088, GSM818089, GSM818090, GSM818091, GSM818092, GSM818093, GSM818094, GSM818095, GSM818096, GSM818097, GSM818098, GSM818099, GSM818100, GSM818101, GSM818102, GSM818103, GSM818104, GSM818105, GSM818106, GSM818107, GSM818108, GSM818109, GSM818110, GSM818111, GSM818112, GSM818113, GSM818114, GSM818115, GSM818116, GSM818117, GSM818118, GSM818119, GSM818120, GSM818121, GSM818122, GSM818123, GSM818124, GSM818125, GSM818126, GSM818127, GSM818128, GSM818129, GSM818130, GSM818131, GSM818132, GSM818133, GSM818134, GSM818135, GSM818136, GSM818137, GSM818138, GSM818139, GSM818140, GSM818141, GSM818142, GSM818143, GSM818144, GSM818145, GSM818146, GSM818147, GSM818148, GSM818149, GSM818150, GSM818151, GSM818152, GSM818153, GSM818154, GSM818155, GSM818156, GSM818157, GSM818158, GSM818159, GSM818160, GSM818161, GSM818162, GSM818163, GSM818164, GSM818165, GSM818166, GSM818167, GSM818168, GSM818169, GSM818170, GSM818171, GSM818172, GSM818173, GSM818174, GSM818175, GSM818176, GSM818177, GSM818178, GSM818179, GSM818180, GSM818181, GSM818182, GSM818183, GSM818184, GSM818185, GSM818186, GSM818187, GSM818188, GSM818189, GSM818190, GSM818191, GSM818192, GSM818193, GSM818194, GSM818195, GSM818196, GSM818197, GSM818198, GSM818199, GSM818200, GSM818201, GSM818202, GSM818203, GSM818204, GSM818205, GSM818206, GSM818207, GSM818208, GSM818209, GSM818210, GSM818211, GSM818212, GSM818213, GSM818214, GSM818215, GSM818216, GSM818217, GSM818218, GSM818219, GSM818220, GSM818221, GSM818222, GSM818223, GSM818224, GSM818225, GSM818226, GSM818227, GSM818228, GSM818229, GSM818230, GSM818231, GSM818232, GSM818233, GSM818234, GSM818235, GSM818236, GSM818237, GSM818238, GSM818239, GSM1943768, GSM1943769, GSM1943770, GSM1943771, GSM1943772, GSM1943773, GSM1943774, GSM1943775, GSM1943776, GSM1943777, GSM1943778, GSM1943779, GSM1943780, GSM1943781, GSM1943782, GSM1943783, GSM1943784, GSM1943785, GSM1943786, GSM1943787, GSM1943788, GSM1943789, GSM1943790, GSM1943791, GSM1943792, GSM1943793, GSM1943794, GSM1943795, GSM1943796, GSM1943797, GSM1943798, GSM1943799, GSM1943800, GSM1943801, GSM1943802, GSM1943803, GSM1943804, GSM1943805, GSM1943806, GSM1943807, GSM1943808, GSM1943809, GSM1943810, GSM1943811, GSM1943812, GSM1943813, GSM1943814, GSM1943815, GSM1943816, GSM1943818, GSM1943819, GSM1943820, GSM1943821, GSM1943822, GSM1943823, GSM1943824, GSM1943825, GSM1943826, GSM1943827, GSM1943828, GSM1943829, GSM1943830, GSM1943831, GSM1943832, GSM1943833, GSM1943834, GSM1943835, GSM1943836, GSM1943837, GSM1943838, GSM1943839, GSM1943840, GSM1943841, GSM1943842, GSM1943843, GSM1943844, GSM1943845, GSM1943846, GSM1943847, GSM1943848, GSM1943849, GSM1943850, GSM1943851, GSM1943852, GSM1943853, GSM1943854, GSM1943855, GSM1943856, GSM1943857, GSM1943858, GSM1943859, GSM1943860, GSM1943861, GSM1943862, GSM1943863, GSM1943864, GSM1943865, GSM1943866, GSM1943867, GSM1943868, GSM1943869, GSM1943870, GSM1943871, GSM1943872, GSM1943873, GSM1943874, GSM1943875, GSM1943876, GSM1943877, GSM1943878, GSM1943879, GSM1943880, GSM1943881, GSM1943882, GSM1943883, GSM1943884, GSM1943885, GSM1943886, GSM1943887, GSM1943888, GSM1943889, GSM1943890, GSM1943891, GSM1943892, GSM1943893, GSM1943894, GSM1943895, GSM1943896, GSM1943897, GSM1943898, GSM1943899, GSM1943900, GSM1943901, GSM1943902, GSM1943903, GSM1943904, GSM1943905, GSM1943906, GSM1943907, GSM1943908, GSM1943909, GSM1943910, GSM1943911, GSM1943912, GSM1943913, GSM1943914, GSM1943915, GSM1943916, GSM1943917, GSM1943918, GSM1943919, GSM1943920, GSM1943921, GSM1943922, GSM1943923, GSM1943924, GSM1943925, GSM1943926, GSM1943927, GSM1943928, GSM1943929, GSM1943930, GSM1943931, GSM1943932, GSM1943933, GSM1943934, GSM1943935, GSM1943936, GSM1943937, GSM1943938, GSM1943939, GSM1943940, GSM1943941, GSM1943942, GSM1943943
|
| Series (3) |
| GSE28287 |
Plasmodium falciparum CNV-SNP chip optimization |
| GSE33002 |
A major genome region underlying artemisinin resistance in malaria |
| GSE75137 |
Population structure shapes copy number variation in malaria parasites |
|
| Data table header descriptions |
| ID |
|
| SEQUENCE |
Sequence of oligo |
| Chromosome |
Chromosomal location |
| RANGE_START |
Chromosomal start position of oligo |
| LENGTH |
Oligo length |
| RANGE_END |
Chromosomal end position of oligo |
| Data table |
| ID |
SEQUENCE |
Chromosome |
RANGE_START |
LENGTH |
RANGE_END |
| 10055_0250_0774 |
TAAAACCTAAAACCCTGAACCCTTACTTTTCATTTCTTCTTCTTATCTTC |
1 |
557 |
50 |
606 |
| 10055_0861_0749 |
CTTCTTAAATATTAGGTCCTTAATCTCATAATTCTACTCTTACTTTCTTACTTC |
1 |
1428 |
54 |
1481 |
| 10055_0241_0891 |
AATTAGTACTTAGGATTCATCTCATGTAGGTTATATGTTCTTATAAGGTGCACCTACATGCA |
1 |
2337 |
62 |
2398 |
| 10055_0805_1147 |
ACTACGATTCTAACTTATTTCATGATTTTCTTACTCTTATCTTTATCTACTATCATTA |
1 |
2697 |
58 |
2754 |
| 10055_0463_0895 |
ACCTTACTATTACCAAATCCATGTCCAATGTTGCACTTTAATGCACAATAAGGTCCAA |
1 |
2759 |
58 |
2816 |
| 10055_0827_1007 |
TACATGCACAATAACGTCCAATATAAGTGAACTACAACTACTATTCTCACATAAGGTGTCAT |
1 |
2931 |
62 |
2992 |
| 10055_0389_1007 |
TACTTATTATCGTCATATGTTGCACTTTAATGCATAATGATGTCGAACATAACTCATTTACTAC |
1 |
3331 |
64 |
3394 |
| 10055_0729_0853 |
CTAATTACTACTAAATCTATCACACAAGTTGCACTCACATGCACAATAATCACCAACATAACTCA |
1 |
3727 |
65 |
3791 |
| 10055_0497_1269 |
TTCTTACTACTACACACACATATAACCGTACTACTTCCTCCATTATTTACCAATTC |
1 |
4241 |
56 |
4296 |
| 10055_0091_1215 |
ACGAAACGTCGACTTCAATACTGACAACTCCAAATAGGTCTATTTCATTTTTTA |
1 |
5243 |
54 |
5296 |
| 10055_0075_0773 |
TCATTTTTTATTTTTCATCAAAATTTCTATTCCTTAATTACCCCCAAAACA |
1 |
5287 |
51 |
5337 |
| 10055_0238_0902 |
TCTTACAACTCATTAATCACATGCATGCTTACTATTTGTTGGTCAAAATAGTACTTCTTT |
1 |
5932 |
60 |
5991 |
| 10055_0154_0834 |
GGGGGGTATAGCTCTTTGGGCCAATTTTTCATAAAATTTTGGGTCCATTT |
1 |
6371 |
50 |
6420 |
| 10055_0861_0775 |
TTTCTACAACGTCAACAAAATATGGTACACAATTTCTATATACGCCATCACATAGTCCATGA |
1 |
6722 |
62 |
6783 |
| 10055_0037_0829 |
ACTATGTCTATTTTTTGTGTGCACTTTAATTTTCCTTCATAGTCAATTTTCCCC |
1 |
6820 |
54 |
6873 |
| 10055_0188_1126 |
TTTTTGGCCGTTTTTGGGCAGGGAAAAGGTGAGTCAATTGTTCCTTTACATA |
1 |
7204 |
52 |
7255 |
| 10055_0332_1064 |
CAAAACCGGAAATTCGGGTTTTAGACCCAAATTATAGAACGCAATTTCCA |
1 |
7381 |
50 |
7430 |
| 10055_0032_0896 |
AGAACGCAATTTCCACCAGGTACGCCAACGTGGATATTTCTATCATATAGTC |
1 |
7416 |
52 |
7467 |
| 10055_0789_1243 |
CTTCATTGTTCATTATTTGTGGTACCCTTTTTGTGTGTGATGTATGTATTTTTGCATGCT |
1 |
8659 |
60 |
8718 |
| 10055_0221_0977 |
CACACAAGTTGCATGAAGGTTATATTATGTCGGGTTACGTCTGACCGTTTATCTTTA |
1 |
8855 |
57 |
8911 |
Total number of rows: 355803
Table truncated, full table size 32527 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL13355_090601_Pfal_JT_Tiling.ndf.gz |
34.6 Mb |
(ftp)(http) |
NDF |
| GPL13355_090601_Pfal_JT_Tiling.pos.gz |
3.6 Mb |
(ftp)(http) |
POS |
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