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Platform GPL13366 Query DataSets for GPL13366
Status Public on Mar 30, 2012
Title NimbleGen_GenAu MB BCELL v2.5
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol as described in www.nimblegen.com
 
Description Custom array.
genomic regions of potential pax5 target genes from mm6, including IGH and surrounding genes
isothermal tiling oligos at 100bp
 
Contributor(s) McManus S, Ebert A, Novatchkova M, Busslinger M
Submission date Apr 04, 2011
Last update date Mar 30, 2012
Contact name Meinrad Busslinger
E-mail(s) busslinger@imp.ac.at
Phone 00431-79730
Organization name Instutute of Molecular Pathology
Street address Dr. Bohrgasse 7
City Vienna
ZIP/Postal code 1030
Country Austria
 
Samples (6) GSM701427, GSM701428, GSM701429, GSM701430, GSM701431, GSM701432
Series (1)
GSE28373 The transcription factor Pax5 regulates its target genes by recruiting chromatin-modifying proteins in committed B cells

Data table header descriptions
ID
Chromosome Chromosomal location (UCSC mm6; NCBI build 34)
RANGE_GB Chromosome accession.version
SPOT_ID
Position
Direction Chromosomal direction (UCSC mm6; NCBI build 34)
SEQUENCE Sequence of oligo

Data table
ID Chromosome RANGE_GB SPOT_ID Position Direction SEQUENCE
2034_0001_0077 null null 0 + CCGGGTGAGCCGGTGAGAAGTCGCCGTCGAAAGGGATCGTGCAAG
2034_0001_0227 null null 0 + CTAGGATATGATAGTTGTCGGAGGTGTGAGCAAGACGGCGACGCT
2034_0001_0567 null null 0 + CTAACCCGGTGATGACTCCATCGAAGTAACTTCCCTAACTACGGT
2034_0001_0659 null null 0 + TGTGAGATTCTGGGCAATTTGGCACTGTGCTCGTATGCCGTATAA
2034_0001_0719 null null 0 + CGCGAGCGTATTGACAATATCGTGTGGTCTCTAGTGGAGCTCTAT
2034_0001_0913 null null 0 + CGCCATGGGATTGCCGAATGGCGATGCGAGGATAAGAATCCCAGC
2034_0001_0949 null null 0 + ACCCATACGGGAGGAGCGGGCCGCATCGTGTCCATTGCAGTGGAG
2034_0002_0085 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0087 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0089 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0091 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0093 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0095 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0097 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0099 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0101 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0103 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0105 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0107 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN
2034_0002_0109 null null 0 + TAGAGGTCATTACAGCGAGAGGAANNNNNNNNNNNNNNNNNNNNNNN

Total number of rows: 391015

Table truncated, full table size 36468 Kbytes.




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Supplementary file Size Download File type/resource
GPL13366_2034.ndf.gz 19.0 Mb (ftp)(http) NDF
GPL13366_2034.pos.gz 2.3 Mb (ftp)(http) POS

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