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Platform GPL13638 Query DataSets for GPL13638
Status Public on Jan 11, 2013
Title Agilent custom Klebsiella 4×44K Oligo Microarray
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Manufacturer Agilent (Welgene Biotech. Co., Taiwan)
Manufacture protocol http://www.chem.agilent.com/Library/usermanuals/Public/G4813-90010_Prokaryote_Protocol.pdf
 
 
Submission date May 23, 2011
Last update date Jan 11, 2013
Contact name Yichyi Lai
E-mail(s) yclai@csmu.edu.tw
Phone 886958731127
Fax 886424727178
Organization name Chung Shan Medical University
Department Microbiology and Immunology
Lab YCL
Street address No.110, Sec. 1 Jianguo N. Road
City Taichung
ZIP/Postal code 402
Country Taiwan
 
Samples (1) GSM728931
Series (1)
GSE29448 Klebsiella pneumoniae: WT vs. Hfq mutant

Data table header descriptions
ID
Gene Gene name based on the annotation of K. pneumoniae NTUH-K2044 chromosome (NC_012731)
Product Product prediction based on the annotation of K. pneumoniae NTUH-K2044 chromosome (NC_012731)
COG Based on the annotation of K. pneumoniae NTUH-K2044 chromosome (NC_012731)
ORF ORF Name
PROBE_ID
SEQUENCE Probe sequence

Data table
ID Gene Product COG ORF PROBE_ID SEQUENCE
gb_KP0001 mioC flavodoxin-like FMN-binding protein COG0716C mioC CUST_1796_PI349670764 CAAAACAGATCGGTGAGACGCTGAAGATCAACGTCCTTGAACACGAAATTCCGGAGGATC
gb_KP0002 asnC DNA-binding transcriptional dual regulator COG1522K asnC CUST_1795_PI349670764 GCTTACTACACCACCGGCCACTACAGCATCTTTATTAAGGTGATGTGTAAATCCATCGAT
gb_KP0003 asnA asparagine synthetase COG2502E asnA CUST_1794_PI349670764 ATATATCGCAAAACAACGCCAGATCAGTTTCGTTAAATCCCACTTTTCCCGTCAGCTG
gb_KP0004 yieM hypothetical protein KP1_0004 COG2425R yieM CUST_1793_PI349670764 GATAATCGTCGCTGCTTCATTATGCTGTTTTCCAGCGAAGTGGTGCATTACGAGTTGAC
gb_KP0005 yieN putative 2-component regulator COG0714R yieN CUST_1792_PI349670764 GATTGACCTTATCCTGCTGAAAGATTGTCTGTGGCACAACGTCGAAAGTATGAACCTGAT
gb_KP0006 trkD low affinity potassium transport system COG3158P trkD CUST_1790_PI349670764 GATTTACATTCCGTTCATTAACTGGCTGCTGTACGTTTCTGTGGTCATCGTTATCGTCAG
gb_KP0007 rbsD D-ribose high-affinity transport system membrane-associated component COG1869G rbsD CUST_1789_PI349670764 GGAAATACCATTGAAATTCGTTACACCAGCCATGAGCAGTTCAAAAAACAAACCGCAGAC
gb_KP0008 rbsA D-ribose high-affinity transport system ATP-binding component COG1129G rbsA CUST_1787_PI349670764 GTAGTCTTAAGCATAAAGATGAACAGCAGGCGGTGAGTGATTTCATCCGCCTGTTTAAC
gb_KP0009 rbsC D-ribose high-affinity transport system permease component COG1172G rbsC CUST_1785_PI349670764 GATTGGTGCGCTGATCCTTGGCTTCCTGAATAATGGTCTTAATCTTTTAGGCGTTTCTTC
gb_KP0010 rbsB D-ribose high-affinity transport system periplasmic component COG1879G rbsB CUST_1779_PI349670764 GAAAATGGCTGGCGATTACATCGCGAAAAAAGTGGGTGAAAGTGCAAAAGTCATTGAG
gb_KP0011 rbsK ribokinase COG0524G rbsK CUST_1778_PI349670764 AAACTTGTCGTCCTTGGCAGTATCAATGCCGATCACATTCTTAACCTTGACGCTTTC
gb_KP0012 rbsR transcriptional repressor for rbs operon COG1609K rbsR CUST_1777_PI349670764 CAATACCGAAGGTGATGAGCAGCGAATGAATCGTAATCTGGAGACGCTAATGCAAAAAC
gb_KP0013 yieO putative MFS-family transport protein COG2814G yieO CUST_1776_PI349670764 TCACTACACCTTTATAACCATGGGCGTGATAACCATTATATCGGCGCTGATGTTTATGCT
gb_KP0014 yieP putative regulatory protein COG2186K yieP CUST_1775_PI349670764 AACGCTGGATAGAAGTCGATATGGCCTGGCATGAACATATCTATGAAATGAGCGGTAATC
gb_KP0016 mobB molybdopterin-guanine dinucleotide biosynthesis protein B COG1763H mobB CUST_1774_PI349670764 CTCACTTCCGCTGCTGGATTTAAATGATGTACCACAGATCGCGACATTTATTGTGAGTTG
gb_KP0017 mobA molybdopterin-guanine dinucleotide biosynthesis protein A COG0746H mobA CUST_1773_PI349670764 AAACAGCTTTCATTAATGTAAATACGCTCGAAGATTTGCAGCAGATGCAGGAGCCATCAT
gb_KP0018 - hypothetical protein KP1_0018 COG3084S CUST_1772_PI349670764 CATGAAATGTAAACGTCTGAATGAAGTAATTGAACTCCTCCAGCCAGCCTGGCAAAAAGA
gb_KP0019 - hypothetical protein KP1_0019 COG2334R CUST_1771_PI349670764 CTTATTTAATGACAGCACGCTTCATCAGCATCAGGGATTCTACTTTGCCGTTTTCCCAAG
gb_KP0022 dsbA periplasmic protein disulfide isomerase I COG1651O dsbA CUST_1769_PI349670764 CTATGTATGTTAATGGTAAATACCAGCTGAATCCGCAGGGGATGGACACCAGCAATATGG
gb_KP0023 yihG putative endonuclease COG0204I yihG CUST_1768_PI349670764 AAGCATATTCCGATGAATAAGTACTTCCTTAAACAACAGCTGGCGTGGGTACCCTTCATT

Total number of rows: 5024

Table truncated, full table size 691 Kbytes.




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Supplementary file Size Download File type/resource
GPL13638_probe_list.txt.gz 162.6 Kb (ftp)(http) TXT

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