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| Status |
Public on Dec 31, 2011 |
| Title |
NimbleGen A. thaliana Gene Expression 12x135K Array [090717_Athal_TAIR9_exp] |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Arabidopsis thaliana |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's web site www.nimblegen.com
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| Description |
Format:12X135K
Build:9
Source: TAIR
System: Arabidopsis thaliana
Probe length: 60mer
Target genes: 39,042
Probes/target: 4
Replicates:1
http://www.nimblegen.com/products/expression/eukarya/athaliana/12x135k/index.html
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| Submission date |
Jun 07, 2011 |
| Last update date |
Jan 18, 2013 |
| Organization |
NimbleGen Systems, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
|
| Phone |
608-218-7600
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| URL |
http://www.nimblegen.com/
|
| Street address |
504 S. Rosa Road
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53719 |
| Country |
USA |
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| Samples (56)
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GSM738225, GSM738226, GSM738227, GSM738228, GSM738229, GSM738230
GSM738231, GSM738232, GSM738233, GSM738234, GSM738235, GSM738236, GSM913948, GSM913949, GSM913950, GSM913951, GSM913952, GSM913953, GSM913954, GSM913955, GSM913956, GSM913957, GSM913958, GSM913959, GSM991076, GSM991077, GSM991078, GSM991079, GSM991080, GSM991081, GSM991082, GSM991083, GSM991084, GSM991085, GSM991086, GSM991087, GSM1481411, GSM1481412, GSM1481413, GSM1481414, GSM1481415, GSM1481416, GSM1481417, GSM1481418, GSM1481419, GSM1949704, GSM1949705, GSM1949706, GSM1949707, GSM1949708, GSM1949709, GSM1949710, GSM1949711, GSM1949712, GSM1949713, GSM1949714
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| Series (6)
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| GSE29786 |
Role of bHLH93 in controlling flowering time in Arabidopsis |
| GSE37217 |
Expression analysis of picloram responsive genes preceding cell elongation in Arabidopsis hypocotyls. |
| GSE40305 |
Global transcriptome analysis in fast-growing Arabidopsis thaliana with elevated level of ATP [roots] |
| GSE40307 |
Global transcriptome analysis in fast-growing Arabidopsis thaliana with elevated level of ATP |
| GSE60508 |
Expression analysis of Arabidopsis thaliana wild-type Col-0 and selected RNA silencing mutant plants |
| GSE75326 |
Expression analysis of Arabidopsis thaliana mutant atpme3-1 |
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| Data table header descriptions |
| ID |
Based on SEQ_ID from .ngd file |
| ORF |
Locus tag |
| SYMBOLS |
|
| DESCRIPTION |
Transcript description |
| REGION |
|
| CHROMOSOME |
|
| START |
|
| STOP |
|
| STRAND |
|
| Data table |
| ID |
ORF |
SYMBOLS |
DESCRIPTION |
REGION |
CHROMOSOME |
START |
STOP |
STRAND |
| AT1G51370_2 |
AT1G51370 |
|
F-box family protein |
chr1:19045615-19046825 FORWARD |
chr1 |
19045615 |
19046825 |
FORWARD |
| AT1G50920_1 |
AT1G50920 |
|
GTP-binding protein-related |
chr1:18870139-18872930 FORWARD |
chr1 |
18870139 |
18872930 |
FORWARD |
| AT1G36960_1 |
AT1G36960 |
|
unknown protein |
chr1:14014796-14015508 FORWARD |
chr1 |
14014796 |
14015508 |
FORWARD |
| AT1G44020_1 |
AT1G44020 |
|
DC1 domain-containing protein |
chr1:16716112-16718656 REVERSE |
chr1 |
16716112 |
16718656 |
REVERSE |
| AT1G15970_1 |
AT1G15970 |
|
methyladenine glycosylase family protein |
chr1:5486319-5488868 REVERSE |
chr1 |
5486319 |
5488868 |
REVERSE |
| AT1G73440_1 |
AT1G73440 |
|
calmodulin-related |
chr1:27611363-27612815 FORWARD |
chr1 |
27611363 |
27612815 |
FORWARD |
| AT1G75120_1 |
AT1G75120 |
RRA1 |
RRA1 (REDUCED RESIDUAL ARABINOSE 1) |
chr1:28196857-28198802 REVERSE |
chr1 |
28196857 |
28198802 |
REVERSE |
| AT1G17600_1 |
AT1G17600 |
|
disease resistance protein (TIR-NBS-LRR class), putative |
chr1:6053250-6056572 REVERSE |
chr1 |
6053250 |
6056572 |
REVERSE |
| AT1G50860_1 |
AT1G50860 |
|
transposable element gene |
chr1:18850511-18854356 REVERSE |
chr1 |
18850511 |
18854356 |
REVERSE |
| AT1G51380_1 |
AT1G51380 |
|
eukaryotic translation initiation factor 4A, putative / eIF-4A, putative |
chr1:19047882-19050162 FORWARD |
chr1 |
19047882 |
19050162 |
FORWARD |
| AT1G77370_1 |
AT1G77370 |
|
glutaredoxin, putative |
chr1:29073843-29074796 FORWARD |
chr1 |
29073843 |
29074796 |
FORWARD |
| AT1G44090_1 |
AT1G44090 |
ATGA20OX5, GA2OX5 |
ATGA20OX5 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5); gibberellin 20-oxidase |
chr1:16760677-16762486 REVERSE |
chr1 |
16760677 |
16762486 |
REVERSE |
| AT1G10950_1 |
AT1G10950 |
|
endomembrane protein 70, putative |
chr1:3659209-3663984 FORWARD |
chr1 |
3659209 |
3663984 |
FORWARD |
| AT1G31870_1 |
AT1G31870 |
|
unknown protein |
chr1:11436747-11440109 FORWARD |
chr1 |
11436747 |
11440109 |
FORWARD |
| AT1G51360_1 |
AT1G51360 |
ATDABB1, DABB1 |
DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1) |
chr1:19044184-19044900 FORWARD |
chr1 |
19044184 |
19044900 |
FORWARD |
| AT1G14940_1 |
AT1G14940 |
|
major latex protein-related / MLP-related |
chr1:5154537-5155563 REVERSE |
chr1 |
5154537 |
5155563 |
REVERSE |
| AT1G50950_1 |
AT1G50950 |
|
thioredoxin-related |
chr1:18880320-18884225 FORWARD |
chr1 |
18880320 |
18884225 |
FORWARD |
| AT1G75110_1 |
AT1G75110 |
RRA2 |
RRA2 (REDUCED RESIDUAL ARABINOSE 2) |
chr1:28194115-28195933 REVERSE |
chr1 |
28194115 |
28195933 |
REVERSE |
| AT1G17400_1 |
AT1G17400 |
|
unknown protein |
chr1:5960481-5962481 REVERSE |
chr1 |
5960481 |
5962481 |
REVERSE |
| AT1G09420_1 |
AT1G09420 |
G6PD4 |
G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4); glucose-6-phosphate dehydrogenase |
chr1:3038462-3041819 REVERSE |
chr1 |
3038462 |
3041819 |
REVERSE |
Total number of rows: 39640
Table truncated, full table size 5866 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL13697_090717_Athal_TAIR9_exp.ndf.gz |
7.8 Mb |
(ftp)(http) |
NDF |
| GPL13697_090717_Athal_TAIR9_exp.ngd.gz |
1.3 Mb |
(ftp)(http) |
NGD |
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