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Platform GPL13905 Query DataSets for GPL13905
Status Public on Jul 30, 2011
Title Agilent Human Genome CGH Microarray 44 k
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol The microarray contains 44255 in situ synthesized 60-mer probes spaced at 43000 bp intervals throughout the human genome and includes 3877 controls. The probes are, according to the manufacturer’s description, enriched in cancer-relevant genes, representing both coding and non-coding sequences on the chromosomes. Experiments using Agilent arrays were performed using human placenta genomic DNA as reference and following Agilent’s recommended standard protocol. The arrays were scanned using the Agilent scanner, and data were extracted, filtered and normalized using the Feature Extraction program (Agilent Technologies). The Agilent CGH Analytics Software 3.4 trial (Agilent Technologies) was used to export the CGH array data.
Contributor(s) Robledo C, Hernandez JM, Garcia JL
Submission date Jul 13, 2011
Last update date Jul 30, 2011
Contact name Cristina Robledo
Organization name CIC
Street address Campus Miguel de Unamuno
City Salamanca
ZIP/Postal code 37007
Country Spain
Samples (8) GSM772497, GSM772498, GSM773406, GSM773407, GSM773408, GSM773409 
Series (1)
GSE31203 Molecular characterization of the chromosome 7 in SMZL

Data table header descriptions
ID FeatureNum
ProbeName Name of probe
GeneName Name of gene
SystematicName Position of the oligonucleotide in the genome
Description Description of the function of genes

Data table
1 HsCGHBrightCorner HsCGHBrightCorner DarkCorner --DarkCorner
2 DarkCorner DarkCorner DarkCorner --DarkCorner
3 A_14_P122148 NLGN1 chr3:175483690-175483749 chr3 NC_000003.10 175483690 175483749 Homo sapiens neuroligin 1 (NLGN1), mRNA [NM_014932]
4 A_14_P113625 chr14:037557242-037557301 chr14 NC_000014.7 37557242 37557301 Unknown
5 A_14_P103559 SRD5A2 chr2:031698424-031698483 chr2 NC_000002.10 31698424 31698483 Homo sapiens steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) (SRD5A2), mRNA [NM_000348]
6 A_14_P129762 NETO2 chr16:045682211-045682270 chr16 NC_000016.8 45682211 45682270 Homo sapiens neuropilin (NRP) and tolloid (TLL)-like 2 (NETO2), mRNA [NM_018092]
7 A_14_P120045 COL27A1 chr9:114032695-114032754 chr9 NC_000009.10 114032695 114032754 Homo sapiens collagen, type XXVII, alpha 1 (COL27A1), mRNA [NM_032888]
8 A_14_P123995 RABL3 chr3:121903263-121903322 chr3 NC_000003.10 121903263 121903322 Homo sapiens RAB, member of RAS oncogene family-like 3 (RABL3), mRNA [NM_173825]
9 A_14_P137812 FLJ33167 chr4:185987795-185987854 chr4 NC_000004.10 185987795 185987854 Homo sapiens hypothetical protein FLJ33167 (FLJ33167), mRNA [NM_152683]
10 A_14_P121658 C18orf25 chr18:042067848-042067907 chr18 NC_000018.8 42067848 42067907 Homo sapiens chromosome 18 open reading frame 25 (C18orf25), transcript variant 1, mRNA [NM_145055]
11 A_14_P200794 SLITRK6 chr13:085268351-085268410 chr13 NC_000013.9 85268351 85268410 Homo sapiens SLIT and NTRK-like family, member 6 (SLITRK6), mRNA [NM_032229]
12 A_14_P122919 THEM2 chr6:024806112-024806169 chr6 NC_000006.10 24806112 24806169 Homo sapiens thioesterase superfamily member 2 (THEM2), mRNA [NM_018473]
13 A_14_P130374 PDZRN4 chr12:040254224-040254283 chr12 NC_000012.10 40254224 40254283 Homo sapiens PDZ domain containing RING finger 4 (PDZRN4), mRNA [NM_013377]
14 A_14_P200717 chrX:036963532-036963591 chrX NC_000023.9 36963532 36963591 Unknown
15 A_14_P124952 ARHGEF17 chr11:072757694-072757753 chr11 NC_000011.8 72757694 72757753 Homo sapiens Rho guanine nucleotide exchange factor (GEF) 17 (ARHGEF17), mRNA [NM_014786]
16 A_14_P118299 C10orf4 chr10:095435016-095435075 chr10 NC_000010.9 95435016 95435075 Homo sapiens chromosome 10 open reading frame 4 (C10orf4), transcript variant FRA10AC1-2, mRNA [NM_203441]
17 A_14_P123605 KIAA1423 chr6:158933179-158933238 chr6 NC_000006.10 158933179 158933238 Homo sapiens mRNA for KIAA1423 protein, partial cds. [AB037844]
18 A_14_P135559 SSB4 chr3:142350082-142350141 chr3 NC_000003.10 142350082 142350141 Homo sapiens SPRY domain-containing SOCS box protein SSB-4 (SSB4), mRNA [NM_080862]
19 A_14_P126689 GSH-2 chr4:054808221-054808271 chr4 NC_000004.10 54808221 54808271 Homo sapiens homeobox protein GSH-2 (GSH-2), mRNA [NM_133267]
20 A_14_P102536 NRN1 chr6:005943381-005943440 chr6 NC_000006.10 5943381 5943440 Homo sapiens neuritin 1 (NRN1), mRNA [NM_016588]

Total number of rows: 43866

Table truncated, full table size 6701 Kbytes.

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Supplementary data files not provided

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