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Status
Public on Jul 29, 2011
Title
NimbleGen 090918 Vitus vinifera exp HX12 [090918_Vitus_exp]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Vitis vinifera Manufacturer
NimbleGen
Manufacture protocol
Standard NimbleGen manufacture protocol.
Catalog number
05224691001
Support
glass
Description
12-plex array with 135,000 features per subarray.
Web link
http://www.nimblegen.com/products/expression/custom/grape/index.html Contributor(s)
Ferrarini A , Tononi P , Delledonne M Submission date
Jul 18, 2011
Last update date
Feb 26, 2016
Contact name
Alberto Ferrarini
E-mail(s)
alberto.ferrarini@univr.it Phone
+39-045-802-7058
Organization name
University of Verona
Department
Scientific and Technological Department
Lab
Plant Functional Genomics Centre
Street address
Strada le Grazie, 15
City
Verona
State/province
Veneto
ZIP/Postal code
37134
Country
Italy
Samples (549)
GSM800999 , GSM801000 , GSM801001 , GSM801002 , GSM801003 , GSM801004
GSM801005 ,
GSM801006 ,
GSM852229 ,
GSM852230 ,
GSM852231 ,
GSM852232 ,
GSM852233 ,
GSM852234 ,
GSM852235 ,
GSM881517 ,
GSM881518 ,
GSM881519 ,
GSM881520 ,
GSM881521 ,
GSM881522 ,
GSM881523 ,
GSM881524 ,
GSM881525 ,
GSM881526 ,
GSM881527 ,
GSM881528 ,
GSM881529 ,
GSM881530 ,
GSM881531 ,
GSM881532 ,
GSM881533 ,
GSM881534 ,
GSM881535 ,
GSM881536 ,
GSM881537 ,
GSM881538 ,
GSM881539 ,
GSM881540 ,
GSM881541 ,
GSM881542 ,
GSM881543 ,
GSM881544 ,
GSM881545 ,
GSM881546 ,
GSM881547 ,
GSM881548 ,
GSM881549 ,
GSM881550 ,
GSM881551 ,
GSM881552 ,
GSM881553 ,
GSM881554 ,
GSM881555 ,
GSM881556 ,
GSM881557 ,
GSM881558 ,
GSM881559 ,
GSM881560 ,
GSM881561 ,
GSM881562 ,
GSM881563 ,
GSM881564 ,
GSM881565 ,
GSM881566 ,
GSM881567 ,
GSM881568 ,
GSM881569 ,
GSM881570 ,
GSM881571 ,
GSM881572 ,
GSM881573 ,
GSM881574 ,
GSM881575 ,
GSM881576 ,
GSM881577 ,
GSM881578 ,
GSM881579 ,
GSM881580 ,
GSM881581 ,
GSM881582 ,
GSM881583 ,
GSM881584 ,
GSM881585 ,
GSM881586 ,
GSM881587 ,
GSM881588 ,
GSM881589 ,
GSM881590 ,
GSM881591 ,
GSM881592 ,
GSM881593 ,
GSM881594 ,
GSM881595 ,
GSM881596 ,
GSM881597 ,
GSM881598 ,
GSM881599 ,
GSM881600 ,
GSM881601 ,
GSM881602 ,
GSM881603 ,
GSM881604 ,
GSM881605 ,
GSM881606 ,
GSM881607 ,
GSM881608 ,
GSM881609 ,
GSM881610 ,
GSM881611 ,
GSM881612 ,
GSM881613 ,
GSM881614 ,
GSM881615 ,
GSM881616 ,
GSM881617 ,
GSM881618 ,
GSM881619 ,
GSM881620 ,
GSM881621 ,
GSM881622 ,
GSM881623 ,
GSM881624 ,
GSM881625 ,
GSM881626 ,
GSM881627 ,
GSM881628 ,
GSM881629 ,
GSM881630 ,
GSM881631 ,
GSM881632 ,
GSM881633 ,
GSM881634 ,
GSM881635 ,
GSM881636 ,
GSM881637 ,
GSM881638 ,
GSM881639 ,
GSM881640 ,
GSM881641 ,
GSM881642 ,
GSM881643 ,
GSM881644 ,
GSM881645 ,
GSM881646 ,
GSM881647 ,
GSM881648 ,
GSM881649 ,
GSM881650 ,
GSM881651 ,
GSM881652 ,
GSM881653 ,
GSM881654 ,
GSM881655 ,
GSM881656 ,
GSM881657 ,
GSM881658 ,
GSM881659 ,
GSM881660 ,
GSM881661 ,
GSM881662 ,
GSM881663 ,
GSM881664 ,
GSM881665 ,
GSM881666 ,
GSM881667 ,
GSM881668 ,
GSM881669 ,
GSM881670 ,
GSM881671 ,
GSM881672 ,
GSM881673 ,
GSM881674 ,
GSM881675 ,
GSM881676 ,
GSM881677 ,
GSM881678 ,
GSM884844 ,
GSM884845 ,
GSM884846 ,
GSM884847 ,
GSM884848 ,
GSM884849 ,
GSM884850 ,
GSM884851 ,
GSM884852 ,
GSM884853 ,
GSM884854 ,
GSM884855 ,
GSM884856 ,
GSM884857 ,
GSM884858 ,
GSM884859 ,
GSM884860 ,
GSM884861 ,
GSM897725 ,
GSM897726 ,
GSM897727 ,
GSM897728 ,
GSM897729 ,
GSM897730 ,
GSM897731 ,
GSM897732 ,
GSM897733 ,
GSM897734 ,
GSM897735 ,
GSM897736 ,
GSM897737 ,
GSM897738 ,
GSM897739 ,
GSM897740 ,
GSM897741 ,
GSM897742 ,
GSM994874 ,
GSM994875 ,
GSM994876 ,
GSM994877 ,
GSM994878 ,
GSM994879 ,
GSM994880 ,
GSM994881 ,
GSM994882 ,
GSM994883 ,
GSM994884 ,
GSM994885 ,
GSM994886 ,
GSM994887 ,
GSM994888 ,
GSM994889 ,
GSM994890 ,
GSM994891 ,
GSM1020424 ,
GSM1020425 ,
GSM1020426 ,
GSM1020427 ,
GSM1020428 ,
GSM1020429 ,
GSM1020430 ,
GSM1020431 ,
GSM1020432 ,
GSM1020433 ,
GSM1020434 ,
GSM1020435 ,
GSM1020436 ,
GSM1020437 ,
GSM1020438 ,
GSM1020439 ,
GSM1020440 ,
GSM1020441 ,
GSM1020442 ,
GSM1020443 ,
GSM1020444 ,
GSM1020445 ,
GSM1020446 ,
GSM1020447 ,
GSM1020448 ,
GSM1020449 ,
GSM1020450 ,
GSM1020451 ,
GSM1020452 ,
GSM1020453 ,
GSM1020454 ,
GSM1020455 ,
GSM1020456 ,
GSM1020457 ,
GSM1020458 ,
GSM1020459 ,
GSM1020460 ,
GSM1020461 ,
GSM1020462 ,
GSM1020463 ,
GSM1020464 ,
GSM1020465 ,
GSM1020466 ,
GSM1020467 ,
GSM1020468 ,
GSM1020469 ,
GSM1020470 ,
GSM1020471 ,
GSM1020472 ,
GSM1020473 ,
GSM1020474 ,
GSM1020475 ,
GSM1020476 ,
GSM1020477 ,
GSM1020478 ,
GSM1020479 ,
GSM1020480 ,
GSM1020481 ,
GSM1020482 ,
GSM1020483 ,
GSM1020484 ,
GSM1020485 ,
GSM1020486 ,
GSM1020487 ,
GSM1020488 ,
GSM1020489 ,
GSM1020490 ,
GSM1020491 ,
GSM1020492 ,
GSM1020493 ,
GSM1020494 ,
GSM1020495 ,
GSM1020496 ,
GSM1020497 ,
GSM1020498 ,
GSM1020499 ,
GSM1020500 ,
GSM1020501 ,
GSM1020502 ,
GSM1020503 ,
GSM1020504 ,
GSM1020505 ,
GSM1020506 ,
GSM1020507 ,
GSM1020508 ,
GSM1020509 ,
GSM1020510 ,
GSM1020511 ,
GSM1020512 ,
GSM1020513 ,
GSM1020514 ,
GSM1020515 ,
GSM1020516 ,
GSM1020517 ,
GSM1020518 ,
GSM1020519 ,
GSM1020520 ,
GSM1020521 ,
GSM1020522 ,
GSM1020523 ,
GSM1020524 ,
GSM1020525 ,
GSM1020526 ,
GSM1020527 ,
GSM1020528 ,
GSM1020529 ,
GSM1020530 ,
GSM1020531 ,
GSM1020532 ,
GSM1020533 ,
GSM1020534 ,
GSM1020535 ,
GSM1020536 ,
GSM1020537 ,
GSM1020538 ,
GSM1020539 ,
GSM1020540 ,
GSM1020541 ,
GSM1020542 ,
GSM1020543 ,
GSM1020544 ,
GSM1020545 ,
GSM1020546 ,
GSM1020547 ,
GSM1020548 ,
GSM1020549 ,
GSM1020550 ,
GSM1020551 ,
GSM1020552 ,
GSM1020553 ,
GSM1020554 ,
GSM1020555 ,
GSM1020556 ,
GSM1020557 ,
GSM1020558 ,
GSM1020559 ,
GSM1020560 ,
GSM1020561 ,
GSM1020562 ,
GSM1020563 ,
GSM1020564 ,
GSM1020565 ,
GSM1020566 ,
GSM1020567 ,
GSM1020568 ,
GSM1020569 ,
GSM1020570 ,
GSM1020571 ,
GSM1020572 ,
GSM1020573 ,
GSM1020574 ,
GSM1020575 ,
GSM1020576 ,
GSM1020577 ,
GSM1020578 ,
GSM1020579 ,
GSM1020580 ,
GSM1020581 ,
GSM1020582 ,
GSM1020583 ,
GSM1020584 ,
GSM1020585 ,
GSM1020586 ,
GSM1020587 ,
GSM1020588 ,
GSM1020589 ,
GSM1020590 ,
GSM1020591 ,
GSM1020592 ,
GSM1020593 ,
GSM1020594 ,
GSM1201883 ,
GSM1201884 ,
GSM1201885 ,
GSM1201886 ,
GSM1201887 ,
GSM1201888 ,
GSM1201889 ,
GSM1201890 ,
GSM1201891 ,
GSM1201892 ,
GSM1201893 ,
GSM1201894 ,
GSM1201895 ,
GSM1201896 ,
GSM1201897 ,
GSM1201898 ,
GSM1201899 ,
GSM1201900 ,
GSM1201901 ,
GSM1201902 ,
GSM1201903 ,
GSM1201904 ,
GSM1201905 ,
GSM1201906 ,
GSM1201907 ,
GSM1201908 ,
GSM1201909 ,
GSM1201910 ,
GSM1201911 ,
GSM1201912 ,
GSM1201913 ,
GSM1201914 ,
GSM1201915 ,
GSM1201916 ,
GSM1201917 ,
GSM1201918 ,
GSM1201919 ,
GSM1201920 ,
GSM1201921 ,
GSM1201922 ,
GSM1201923 ,
GSM1201924 ,
GSM1201925 ,
GSM1201926 ,
GSM1201927 ,
GSM1201928 ,
GSM1201929 ,
GSM1201930 ,
GSM1201931 ,
GSM1201932 ,
GSM1201933 ,
GSM1201934 ,
GSM1201935 ,
GSM1201936 ,
GSM1201937 ,
GSM1201938 ,
GSM1201939 ,
GSM1201940 ,
GSM1201941 ,
GSM1201942 ,
GSM1201943 ,
GSM1201944 ,
GSM1201945 ,
GSM1371118 ,
GSM1371119 ,
GSM1371120 ,
GSM1371121 ,
GSM1371122 ,
GSM1371123 ,
GSM1371124 ,
GSM1371125 ,
GSM1371126 ,
GSM1371127 ,
GSM1371128 ,
GSM1371129 ,
GSM1371130 ,
GSM1371131 ,
GSM1371132 ,
GSM1371133 ,
GSM1371134 ,
GSM1371135 ,
GSM1371136 ,
GSM1371137 ,
GSM1371138 ,
GSM1371139 ,
GSM1371140 ,
GSM1371141 ,
GSM1418986 ,
GSM1418987 ,
GSM1418988 ,
GSM1418989 ,
GSM1418990 ,
GSM1418991 ,
GSM1611792 ,
GSM1611793 ,
GSM1611794 ,
GSM1611795 ,
GSM1611796 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (13)
GSE32343 Grapevine response to Planococcus ficus feeding
GSE34634 Sauvignon blanc berry developmental
GSE36128 The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program
GSE36234 Increasing the source/sink ratio in Vitis vinifera (cv Sangiovese) induces extensive transcriptome reprogramming and modifies berry ripening
GSE36632 Co-evolution between Grapevine rupestris stem pitting-associated virus and Vitis vinifera L. induces a decrease in defence responses and physiological performance associated with an increase in photosynthesis-related gene transcription
GSE40487 Selective defoliation affects plant growth, fruit transcriptional ripening program and flavonoid metabolism in grapevine.
GSE41633 The plasticity of the grapevine berry transcriptome
GSE49569 Plasticity of the ripening process among berry classes
GSE56915 A grapevine anthocyanin acyltransferase, transcriptionally regulated by VvMYBA, can produce most acylated anthocyanins present in grape skins
GSE58742 The phenylpropanoid pathway is controlled at different branches by a set of R2R3 MYB C2 repressors in grapevine
GSE65969 Analysis of the molecular dialogue between gray mold (Botrytis cinerea) and grapevine (Vitis vinifera) reveals a clear shift in defense mechanisms during berry ripening
GSE88765 The Grapevine Vegetative Color Locus Encompasses Three Closely Related R2R3-MYB Transcription Factors and Regulates Anthocyanin Synthesis with Different Specificities Compared to the Berry Color Locus
GSE117849 Root transcriptional profile of 1103P and SO4 grapevine rootstock plants grown in presence and absence of magnesium
Relations Alternative to
GPL17894
Data table header descriptions ID V1 Vitis genome 12X annotation V1 ID (http://genomes.cribi.unipd.it/DATA/V1/)
PT_ACC Protein accession
SEQUENCE Oligo sequence
GENE_CALL_ID Gene Call ID as identified by NimbleScan software
SPOT_ID
Data table ID V1 PT_ACC SEQUENCE GENE_CALL_ID SPOT_ID VitusP00052344
Vv14s0128g00530
CBI36777 GCATCTCAATCCTCTTATTATCGAAACCCATGAAAGTGAAGAAGTATGGAGAGTTTCAAG
CHR14_GSVIVT00000057001_T01
VitusP00052347
Vv14s0128g00530
CBI36777 GAAAGTGAAGAAGTATGGAGAGTTTCAAGTCTTCAAACCCTGTGCATCTTCATCCTTATA
CHR14_GSVIVT00000057001_T01
VitusP00052340
Vv14s0128g00530
CBI36777 TTTCATTCCTATATTTGCATCTCAATCCTCTTATTATCGAAACCCATGAAAGTGAAGAAG
CHR14_GSVIVT00000057001_T01
VitusP00052342
Vv14s0128g00530
CBI36777 CTATATTTGCATCTCAATCCTCTTATTATCGAAACCCATGAAAGTGAAGAAGTATGGAGA
CHR14_GSVIVT00000057001_T01
VitusP00052349
Vv14s0128g00560
CBI36779 AGGTGTTAGTTTCCTAGTAACTGTGGCCCTCATGGCATTGGCTTCATCTTTTGCCTCTGC
CHR14_GSVIVT00000059001_T01
VitusP00052352
Vv14s0128g00560
CBI36779 TGGCATTGGCTTCATCTTTTGCCTCTGCCTCTGATCCAAGCCCACTGCAGGACACTTGCG
CHR14_GSVIVT00000059001_T01
VitusP00052356
Vv14s0128g00560
CBI36779 GATCCAAGCCCACTGCAGGACACTTGCGTTGCCATTGGGGAACCCAAGAATGCTTGTATT
CHR14_GSVIVT00000059001_T01
VitusP00052358
Vv14s0128g00560
CBI36779 GAACTTGTCACTATTTTCACTGATCTTTCCAATTCAATATTGGGCACATTAATGCAGTAG
CHR14_GSVIVT00000059001_T01
VitusP00052363
Vv14s0128g00590
CBI36781 TTTTGCCTCTGCCTCTGATCCAAGCCCACTGCAGGACACTTGCGTTGCCAGACCCAAGAA
CHR14_GSVIVT00000061001_T01
VitusP00052366
Vv14s0128g00590
CBI36781 TCTGATCCAAGCCCACTGCAGGACACTTGCGTTGCCAGACCCAAGAATGCTGGTATTTCT
CHR14_GSVIVT00000061001_T01
VitusP00052359
Vv14s0128g00590
CBI36781 AGGTGTTAGTTTCCTAGTAACTGTGGCCCTCATGGCATTGGCTTCATCTTTTGCCTCTGC
CHR14_GSVIVT00000061001_T01
VitusP00052362
Vv14s0128g00590
CBI36781 ATGGCATTGGCTTCATCTTTTGCCTCTGCCTCTGATCCAAGCCCACTGCAGGACACTTGC
CHR14_GSVIVT00000061001_T01
VitusP00052377
Vv14s0128g00620
CBI36784 TGTTGAGGACTTTGCTAAAGAGGCGCCCACTCGATTTGCTGTGTTTCCTGGAATATTCAG
CHR14_GSVIVT00000064001_T01
VitusP00052369
Vv14s0128g00620
CBI36784 CCTCTTATTCTAGGATGACTATAATGAGGTAATTGAACACCACAAATAGTCATTTAAGCA
CHR14_GSVIVT00000064001_T01
VitusP00052373
Vv14s0128g00620
CBI36784 TATTCTAGGATGACTATAATGAGGTAATTGAACACCACAAATAGTCATTTAAGCAAGGAA
CHR14_GSVIVT00000064001_T01
VitusP00052376
Vv14s0128g00620
CBI36784 TAGGATGACTATAATGAGGTAATTGAACACCACAAATAGTCATTTAAGCAAGGAAAGCAA
CHR14_GSVIVT00000064001_T01
VitusP00224401
Vv07s0129g00750
CBI33747 ACTGGCGCAATCTCCGCCGCCTAAGCGCACTGGAAATCTTCTCTCCGAATCGCCTCAACA
CHR7_GSVIVT00000186001_T01
VitusP00224404
Vv07s0129g00750
CBI33747 GAGCTGATCTCCTAGGTCTTGTTGAAAAGCATCGAAGTCCTAACCGTGGCCTTGTGAATA
CHR7_GSVIVT00000186001_T01
VitusP00224405
Vv07s0129g00750
CBI33747 ATCATCCTGATGTTATGAAGAAAGCTAGAGTCGTAGAATTGGACACTCATGTCAGAAAAG
CHR7_GSVIVT00000186001_T01
VitusP00224410
Vv07s0129g00750
CBI33747 TGACATCATTAAAGCTTATTGCCCTCAGACTGCTGAAGCCTACCTGCATCAAGGATTGTG
CHR7_GSVIVT00000186001_T01
139363 16341 Kbytes .Supplementary file Size Download File type/resource GPL13936_090918_Vitus_exp.ndf.gz
7.9 Mb
(ftp) (http) NDF
GPL13936_090918_Vitus_exp.ngd.gz
182.9 Kb
(ftp) (http) NGD
GPL13936_090918_Vitus_exp_HX12.ncd.gz
311 b
(ftp) (http) NCD
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