GEO help: Mouse over screen elements for information.
Status
Public on Mar 01, 2012
Title
Agilent-019584 Clostridium perfringens 15K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Clostridium perfringens Manufacturer
Agilent
Manufacture protocol
Agilent 60mers. 8x15K.
Description
The DNA microarray contains two probes for all protein-coding sequences in the three genome-sequenced C. perfringens strains (type A strains 13, ATCC13124, and SM101).
Submission date
Jul 26, 2011
Last update date
Mar 01, 2012
Contact name
Panu Somervuo
E-mail(s)
panu.somervuo@helsinki.fi Organization name
University of Helsinki
Street address
Viikinkaari 4
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Samples (163)
GSM767431 , GSM767432 , GSM767433 , GSM767434 , GSM767435 , GSM767436
GSM767437 ,
GSM767438 ,
GSM767439 ,
GSM767440 ,
GSM767441 ,
GSM767442 ,
GSM767443 ,
GSM767444 ,
GSM767445 ,
GSM767446 ,
GSM767447 ,
GSM767448 ,
GSM767449 ,
GSM767450 ,
GSM767451 ,
GSM767452 ,
GSM767453 ,
GSM767454 ,
GSM767455 ,
GSM767456 ,
GSM767457 ,
GSM767458 ,
GSM767459 ,
GSM767460 ,
GSM767461 ,
GSM767462 ,
GSM767463 ,
GSM767464 ,
GSM767465 ,
GSM767466 ,
GSM767467 ,
GSM767468 ,
GSM767469 ,
GSM767470 ,
GSM767471 ,
GSM767472 ,
GSM767473 ,
GSM767474 ,
GSM767475 ,
GSM767476 ,
GSM767477 ,
GSM767478 ,
GSM767479 ,
GSM767480 ,
GSM767481 ,
GSM767482 ,
GSM767483 ,
GSM767484 ,
GSM767485 ,
GSM767486 ,
GSM767487 ,
GSM767488 ,
GSM767489 ,
GSM767490 ,
GSM767491 ,
GSM767492 ,
GSM767493 ,
GSM767494 ,
GSM767495 ,
GSM767496 ,
GSM767497 ,
GSM767498 ,
GSM767499 ,
GSM767500 ,
GSM767501 ,
GSM767502 ,
GSM767503 ,
GSM767504 ,
GSM767505 ,
GSM767506 ,
GSM767507 ,
GSM767508 ,
GSM767509 ,
GSM767510 ,
GSM767511 ,
GSM767512 ,
GSM767513 ,
GSM767514 ,
GSM767515 ,
GSM767516 ,
GSM767517 ,
GSM767518 ,
GSM767519 ,
GSM767520 ,
GSM767521 ,
GSM767522 ,
GSM767523 ,
GSM767524 ,
GSM767525 ,
GSM767526 ,
GSM767527 ,
GSM767528 ,
GSM767529 ,
GSM767530 ,
GSM767531 ,
GSM767532 ,
GSM767533 ,
GSM767534 ,
GSM767535 ,
GSM767536 ,
GSM767537 ,
GSM767538 ,
GSM767539 ,
GSM767540 ,
GSM767541 ,
GSM767542 ,
GSM767543 ,
GSM767544 ,
GSM767545 ,
GSM767546 ,
GSM767547 ,
GSM767548 ,
GSM767549 ,
GSM767550 ,
GSM767551 ,
GSM767552 ,
GSM767553 ,
GSM767554 ,
GSM767555 ,
GSM767556 ,
GSM767557 ,
GSM767558 ,
GSM767559 ,
GSM767560 ,
GSM767561 ,
GSM767562 ,
GSM767563 ,
GSM767564 ,
GSM767565 ,
GSM767566 ,
GSM767567 ,
GSM767568 ,
GSM767569 ,
GSM767570 ,
GSM767571 ,
GSM767572 ,
GSM767573 ,
GSM767574 ,
GSM767575 ,
GSM767576 ,
GSM767577 ,
GSM767578 ,
GSM767579 ,
GSM767580 ,
GSM767581 ,
GSM767582 ,
GSM767583 ,
GSM767584 ,
GSM767585 ,
GSM767586 ,
GSM767587 ,
GSM767588 ,
GSM767589 ,
GSM767590 ,
GSM767591 ,
GSM767592 ,
GSM767593 Series (1)
GSE30954 Comparative genomic hybridization analysis shows different epidemiology of chromosomal and plasmid-borne cpe-carrying Clostridium perfringens type A strains
Data table header descriptions ID COLUMN Column location of probe on array
ROW Row location of probe on array
PROBE_ID Probe identifier
ORF Locus tag
GENOME_ACC Genome accession.version
GB_ACC GenBank accession
SPOT_ID LOCUS Locus name in JCVI CMR database
ANNOTATION Locus annotation in JCVI CMR database
GENBANK Genbank accession id of target sequence
SEQUENCE Probe sequence
Data table ID COLUMN ROW PROBE_ID ORF GENOME_ACC GB_ACC SPOT_ID LOCUS ANNOTATION GENBANK SEQUENCE 1-1
1
1
GE_BrightCorner
--GE_BrightCorner
Agilent
2-1
2
1
GE_BrightCorner
--GE_BrightCorner
Agilent
3-1
3
1
DarkCorner
--DarkCorner
Agilent
4-1
4
1
DarkCorner
--DarkCorner
Agilent
5-1
5
1
pTILE_264_3
CP000313.1 pTILE_264_3
tiling probe
CP000313
AGGATATTTAATTCTTCAAAAAATTTAGGTATAATAAAAATAGATTTAGAAAAAGTTCCA
6-1
6
1
CPF_1025a
CPF_1025 NC_008261.1 CPF_1025 CPF_1025 acetyltransferase. GNAT family {Clostridium perfringens ATCC13124}
NC_008261
TGGCTACCACTTCCATTATACATAGACAATTTAGATTGTGTGTAATTTTTTTTTTTTTTT
7-1
7
1
NT03CP0475a
NC_003366.1 CMR:NT03CP0475
NT03CP0475 NT03CP0475 alcohol dehydrogenase. iron-containing [1.1.1.1] {Clostridium perfringens 13}
NC_003366
GGAAACTTAGAAGAAGTAATAGCTATATTCAGAAAAGCAATGTAGTTTTTTTTTTTTTTT
8-1
8
1
NT03CP0410a
NC_003366.1 CMR:NT03CP0410
NT03CP0410 NT03CP0410 uridine phosphorylase (udp) [2.4.2.3] {Clostridium perfringens 13}
NC_003366
ATTAAAAGTTCCTTACCACACTGGTGTAGTTCAATCAAAGGACTCTTTTTTTTTTTTTTT
9-1
9
1
NT03CP2121.1b
NC_003366.1 CMR:NT03CP2121.1
NT03CP2121.1 NT03CP2121.1 MiaB-like tRNA modifying enzyme {Clostridium perfringens 13}
NC_003366
GCTAAAGAATATGAAGATATAGTAAATCTTTTAAGAGATAAAATAGAAGATGTTTTTTTT
10-1
10
1
NT03CP1431a
NC_003366.1 CMR:NT03CP1431
NT03CP1431 NT03CP1431 putative adenylate cyclase {Clostridium perfringens 13}
NC_003366
CATTTTGTCCATTTCCATACATAGAAATAGAAACTTCTTCTGAAGTTTTTTTTTTTTTTT
11-1
11
1
CPF_1592b
CPF_1592 NC_008261.1 CPF_1592 CPF_1592 hypothetical protein {Clostridium perfringens ATCC13124}
NC_008261
ATGTATATGTTGTGGGAAGGGAACAGACTTAAATGTGCATGTTCATTTTTTTTTTTTTTT
12-1
12
1
NT03CP1175a
NC_003366.1 CMR:NT03CP1175
NT03CP1175 NT03CP1175 hypothetical protein {Clostridium perfringens 13}
NC_003366
AAAACTACAAACAAAGAACAACGAGAAATAGAAGATTTACTATAATTTTTTTTTTTTTTT
13-1
13
1
CPR_2083b
CPR_2083 NC_008262.1 CPR_2083 CPR_2083 hypothetical protein {Clostridium perfringens SM101}
NC_008262
ACCAATACTATGGCTATTGATGAGGAATTTATGAATAAACCAGATAAAGACTTTTTTTTT
14-1
14
1
CPF_0630a
CPF_0630 NC_008261.1 CPF_0630 CPF_0630 spore germination protein {Clostridium perfringens ATCC13124}
NC_008261
CAAATTTAAAGATTAATGTTGATGTTGAAATTGATGGCACAACAATTTTTTTTTTTTTTT
15-1
15
1
CPF_0207a
CPF_0207 NC_008261.1 CPF_0207 CPF_0207 exonuclease SbcC (sbcC) {Clostridium perfringens ATCC13124}
NC_008261
GAGGCAGGAATAGGTGGAAGCAAGGTTAAAATAGAGAGAAGTTAATTTTTTTTTTTTTTT
16-1
16
1
CPF_1158b
CPF_1158 NC_008261.1 CPF_1158 CPF_1158 conserved hypothetical protein {Clostridium perfringens ATCC13124}
NC_008261
CAGCTACAGTTCTTAATACATCAGGAGAAGAACTTCCAGAGAATGTTTTTTTTTTTTTTT
17-1
17
1
CPR_1255a
CPR_1255 NC_008262.1 CPR_1255 CPR_1255 magnesium transporter (mgtE) {Clostridium perfringens SM101}
NC_008262
TTGTTTTAAAGAAATTAAAAGTAGACCCAGCTTTAGCTTCTGCTGTTTTTTTTTTTTTTT
18-1
18
1
CPR_1240b
CPR_1240 NC_008262.1 CPR_1240 CPR_1240 cobalamin biosynthesis protein CbiD (cbiD) {Clostridium perfringens SM101}
NC_008262
AATAATAAAGACCTTGTATTTGTATTTGGAAATATGGGAGAAAGATTTTTTTTTTTTTTT
19-1
19
1
ETG07_105829
--ETG07_105829
Agilent
20-1
20
1
CPF_0176b
CPF_0176 NC_008261.1 CPF_0176 CPF_0176 nitroreductase family protein {Clostridium perfringens ATCC13124}
NC_008261
CTCCAAGTTCATTTGGACTAGAGCCTTGGAAGTTTCTTATTGTAGTTTTTTTTTTTTTTT
15744 2991 Kbytes .Supplementary file Size Download File type/resource GPL13971_019584_D_20080304.gal.gz
1.1 Mb
(ftp) (http) GAL
Less...
More...