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Platform GPL14163 Query DataSets for GPL14163
Status Public on Dec 01, 2011
Title Agilent-016938 MIT/Laub-Caulobacter-44k-v1.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Caulobacter vibrioides CB15
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at
Description Caulobacter chip including 400 bp upstream and 200 bp downstream of every gene

Arrays of this design have barcodes that begin with 16016938 or 2516938.

Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

Submission date Aug 18, 2011
Last update date Dec 01, 2011
Contact name Mark Umbarger
Organization name Harvard Medical School
Department Genetics
Lab Church Lab
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Samples (13) GSM781952, GSM781953, GSM781954, GSM781955, GSM1204481, GSM1204482 
Series (2)
GSE31468 Caulobacter strains ET163 and ET166 vs. CB15N (wild-type)
GSE49654 A comprehensive genomic, transcriptomic and proteomic analysis of a hyperosmotic stress sensitive α-proteobacterium.

Data table header descriptions
ID Agilent feature number
COL Column
SPOT_ID Spot identifier
CONTROL_TYPE Control type

Data table
1 266 170 DarkCorner pos
2 266 168 DarkCorner pos
3 266 166 DarkCorner pos
4 266 164 DarkCorner pos
5 266 162 DarkCorner pos
6 266 160 DarkCorner pos
7 266 158 DarkCorner pos
8 266 156 DarkCorner pos
9 266 154 DarkCorner pos
10 266 152 DarkCorner pos
11 266 150 DarkCorner pos
12 266 148 CC2904-1-319rc FALSE unmapped CC_2904
13 266 146 CC0908-1-333 FALSE unmapped CC_0908
14 266 144 CC3039-1-411 FALSE unmapped CC_3039
15 266 142 CC1879-1-1 FALSE unmapped CC_1879
16 266 140 CC2779-1-146 FALSE unmapped CC_2779
17 266 138 CC1521-1-94 FALSE unmapped CC_1521
18 266 136 CC1424-1-504 FALSE unmapped CC_1424
19 266 134 CC1714-3-190 FALSE unmapped CC_1714
20 266 132 CC2187-1-423 FALSE unmapped CC_2187

Total number of rows: 45220

Table truncated, full table size 2127 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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