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Platform GPL1464 Query DataSets for GPL1464
Status Public on Nov 01, 2004
Title RAKE1
Technology type spotted oligonucleotide
Distribution non-commercial
Organisms Arabidopsis thaliana; Homo sapiens; Mus musculus; Rattus norvegicus
 
Description Printed glass slide microarray for RNA-primed Array-based Klenow Enzyme assay. Used to detect specific miRNA target hybridization to oligo probes, without prior manipulation of the targeted microRNAs.
Keywords = microRNA
Keywords = Klenow
Keywords = biotin
 
Contributor(s) Nelson PT, Baldwin DA, Scearce M, Oberholtzer C, Tobias JW, Mourelatos Z
Submission date Sep 22, 2004
Last update date May 26, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Samples (39) GSM31764, GSM31765, GSM31766, GSM31767, GSM31768, GSM31769 
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID
Block Subarray (print pin)
Column Subarray column
Row Subarray row
Oligo_name Oligomer probe name
miRNA_target MicroRNA name
Taxon Taxon
Comment Comment
Sense_target_sequence miRNA sequence
Oligo_sequence Oligomer probe sequence
Oligo_length Oligomer probe nucleotides
SEQUENCE probe sequence corresponding to target miRNA
SPOT_ID spot identifier

Data table
ID Block Column Row Oligo_name miRNA_target Taxon Comment Sense_target_sequence Oligo_sequence Oligo_length SEQUENCE SPOT_ID
100001 7 1 1 ath-miR156 ath-miR156 Arabidopsis thaliana ugacagaagagagugagcac GTCGTGACTGGGAATAGCCTGTTTgtgctcactctcttctgtca 44 gtgctcactctcttctgtca
100002 7 2 1 ath-miR156 ath-miR156 Arabidopsis thaliana ugacagaagagagugagcac GTCGTGACTGGGAATAGCCTGTTTgtgctcactctcttctgtca 44 gtgctcactctcttctgtca
100003 15 1 1 ath-miR156 ath-miR156 Arabidopsis thaliana ugacagaagagagugagcac GTCGTGACTGGGAATAGCCTGTTTgtgctcactctcttctgtca 44 gtgctcactctcttctgtca
100004 15 2 1 ath-miR156 ath-miR156 Arabidopsis thaliana ugacagaagagagugagcac GTCGTGACTGGGAATAGCCTGTTTgtgctcactctcttctgtca 44 gtgctcactctcttctgtca
100005 23 1 1 ath-miR156 ath-miR156 Arabidopsis thaliana ugacagaagagagugagcac GTCGTGACTGGGAATAGCCTGTTTgtgctcactctcttctgtca 44 gtgctcactctcttctgtca
100006 23 2 1 ath-miR156 ath-miR156 Arabidopsis thaliana ugacagaagagagugagcac GTCGTGACTGGGAATAGCCTGTTTgtgctcactctcttctgtca 44 gtgctcactctcttctgtca
100007 5 1 1 ath-miR157 ath-miR157 Arabidopsis thaliana uugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtcaa 45 gtgctctctatcttctgtcaa
100008 5 2 1 ath-miR157 ath-miR157 Arabidopsis thaliana uugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtcaa 45 gtgctctctatcttctgtcaa
100009 13 1 1 ath-miR157 ath-miR157 Arabidopsis thaliana uugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtcaa 45 gtgctctctatcttctgtcaa
100010 13 2 1 ath-miR157 ath-miR157 Arabidopsis thaliana uugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtcaa 45 gtgctctctatcttctgtcaa
100011 21 1 1 ath-miR157 ath-miR157 Arabidopsis thaliana uugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtcaa 45 gtgctctctatcttctgtcaa
100012 21 2 1 ath-miR157 ath-miR157 Arabidopsis thaliana uugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtcaa 45 gtgctctctatcttctgtcaa
100013 3 1 1 ath-miR157d ath-miR157d Arabidopsis thaliana ugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtca 44 gtgctctctatcttctgtca
100014 3 2 1 ath-miR157d ath-miR157d Arabidopsis thaliana ugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtca 44 gtgctctctatcttctgtca
100015 11 1 1 ath-miR157d ath-miR157d Arabidopsis thaliana ugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtca 44 gtgctctctatcttctgtca
100016 11 2 1 ath-miR157d ath-miR157d Arabidopsis thaliana ugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtca 44 gtgctctctatcttctgtca
100017 19 1 1 ath-miR157d ath-miR157d Arabidopsis thaliana ugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtca 44 gtgctctctatcttctgtca
100018 19 2 1 ath-miR157d ath-miR157d Arabidopsis thaliana ugacagaagauagagagcac GTCGTGACTGGGAATAGCCTGTTTgtgctctctatcttctgtca 44 gtgctctctatcttctgtca
100019 1 1 1 ath-miR158 ath-miR158 Arabidopsis thaliana ucccaaauguagacaaagca GTCGTGACTGGGAATAGCCTGTTTtgctttgtctacatttggga 44 tgctttgtctacatttggga
100020 1 2 1 ath-miR158 ath-miR158 Arabidopsis thaliana ucccaaauguagacaaagca GTCGTGACTGGGAATAGCCTGTTTtgctttgtctacatttggga 44 tgctttgtctacatttggga

Total number of rows: 1536

Table truncated, full table size 215 Kbytes.




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