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Status
Public on Oct 08, 2011
Title
Agilent-026437 D. rerio (Zebrafish) Oligo Microarray V3 (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Danio rerio Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
D. rerio (Zebrafish) Oligo Microarray V3
Submission date
Oct 07, 2011
Last update date
Dec 20, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (625)
GSM826579 , GSM826580 , GSM826581 , GSM826582 , GSM853615 , GSM853616
GSM853617 ,
GSM853618 ,
GSM853619 ,
GSM853620 ,
GSM853621 ,
GSM853622 ,
GSM853623 ,
GSM853624 ,
GSM853625 ,
GSM853626 ,
GSM853627 ,
GSM853628 ,
GSM853629 ,
GSM853630 ,
GSM853631 ,
GSM853632 ,
GSM853633 ,
GSM853634 ,
GSM853635 ,
GSM853636 ,
GSM853637 ,
GSM853638 ,
GSM853639 ,
GSM853640 ,
GSM853641 ,
GSM853642 ,
GSM853643 ,
GSM853644 ,
GSM853645 ,
GSM853646 ,
GSM853647 ,
GSM853648 ,
GSM853649 ,
GSM853650 ,
GSM853651 ,
GSM853652 ,
GSM853653 ,
GSM853654 ,
GSM853655 ,
GSM853656 ,
GSM853657 ,
GSM853658 ,
GSM853659 ,
GSM853660 ,
GSM853661 ,
GSM853662 ,
GSM853663 ,
GSM853664 ,
GSM853665 ,
GSM853666 ,
GSM853667 ,
GSM853668 ,
GSM853669 ,
GSM853670 ,
GSM853671 ,
GSM853672 ,
GSM853673 ,
GSM853674 ,
GSM853675 ,
GSM853676 ,
GSM853677 ,
GSM853678 ,
GSM853679 ,
GSM853680 ,
GSM853681 ,
GSM853682 ,
GSM853683 ,
GSM853684 ,
GSM853685 ,
GSM853686 ,
GSM967371 ,
GSM967372 ,
GSM967373 ,
GSM967374 ,
GSM967375 ,
GSM967376 ,
GSM967377 ,
GSM967378 ,
GSM967379 ,
GSM967380 ,
GSM967381 ,
GSM967382 ,
GSM967383 ,
GSM967384 ,
GSM967385 ,
GSM967386 ,
GSM1015025 ,
GSM1015026 ,
GSM1015027 ,
GSM1015028 ,
GSM1015029 ,
GSM1015030 ,
GSM1015031 ,
GSM1015032 ,
GSM1015033 ,
GSM1015034 ,
GSM1015035 ,
GSM1015036 ,
GSM1015037 ,
GSM1015038 ,
GSM1015039 ,
GSM1015040 ,
GSM1015041 ,
GSM1015042 ,
GSM1015043 ,
GSM1015044 ,
GSM1015045 ,
GSM1015046 ,
GSM1015047 ,
GSM1015048 ,
GSM1015049 ,
GSM1015050 ,
GSM1015051 ,
GSM1015052 ,
GSM1015053 ,
GSM1018121 ,
GSM1018122 ,
GSM1018123 ,
GSM1018124 ,
GSM1018125 ,
GSM1018126 ,
GSM1018127 ,
GSM1018128 ,
GSM1018129 ,
GSM1018130 ,
GSM1018131 ,
GSM1054085 ,
GSM1054086 ,
GSM1295459 ,
GSM1295460 ,
GSM1295461 ,
GSM1295462 ,
GSM1295463 ,
GSM1295464 ,
GSM1295465 ,
GSM1295466 ,
GSM1295467 ,
GSM1295468 ,
GSM1295469 ,
GSM1295470 ,
GSM1295471 ,
GSM1295472 ,
GSM1295473 ,
GSM1295474 ,
GSM1295475 ,
GSM1295476 ,
GSM1295477 ,
GSM1295478 ,
GSM1424601 ,
GSM1424602 ,
GSM1424603 ,
GSM1424604 ,
GSM1424605 ,
GSM1424606 ,
GSM1424607 ,
GSM1424608 ,
GSM1424609 ,
GSM1424610 ,
GSM1424611 ,
GSM1424612 ,
GSM1435664 ,
GSM1435665 ,
GSM1435666 ,
GSM1435667 ,
GSM1575700 ,
GSM1575701 ,
GSM1575702 ,
GSM1575703 ,
GSM1575704 ,
GSM1575705 ,
GSM1575706 ,
GSM1575707 ,
GSM1650441 ,
GSM1650442 ,
GSM1650443 ,
GSM1650444 ,
GSM1650445 ,
GSM1650446 ,
GSM1650447 ,
GSM1650448 ,
GSM1650449 ,
GSM1650450 ,
GSM1650451 ,
GSM1650452 ,
GSM1650453 ,
GSM1650454 ,
GSM1650455 ,
GSM1664144 ,
GSM1664145 ,
GSM1722110 ,
GSM1722111 ,
GSM1722112 ,
GSM1722113 ,
GSM1722114 ,
GSM1722115 ,
GSM1722116 ,
GSM1722117 ,
GSM1832838 ,
GSM1832839 ,
GSM1842159 ,
GSM1842160 ,
GSM1842161 ,
GSM1842162 ,
GSM1842163 ,
GSM1842164 ,
GSM1842165 ,
GSM1842166 ,
GSM1842167 ,
GSM1842168 ,
GSM1842169 ,
GSM1842170 ,
GSM1842171 ,
GSM1842172 ,
GSM1842173 ,
GSM1842174 ,
GSM2138972 ,
GSM2138973 ,
GSM2138974 ,
GSM2138975 ,
GSM2138976 ,
GSM2138977 ,
GSM2138978 ,
GSM2138979 ,
GSM2138980 ,
GSM2138981 ,
GSM2138982 ,
GSM2138983 ,
GSM2138984 ,
GSM2138985 ,
GSM2138986 ,
GSM2138987 ,
GSM2138988 ,
GSM2138989 ,
GSM2138990 ,
GSM2138991 ,
GSM2138992 ,
GSM2138993 ,
GSM2138994 ,
GSM2138995 ,
GSM2138996 ,
GSM2138997 ,
GSM2138998 ,
GSM2138999 ,
GSM2139000 ,
GSM2139001 ,
GSM2139002 ,
GSM2139003 ,
GSM2139004 ,
GSM2139005 ,
GSM2139006 ,
GSM2139007 ,
GSM2139008 ,
GSM2139009 ,
GSM2139010 ,
GSM2139011 ,
GSM2139012 ,
GSM2139013 ,
GSM2242751 ,
GSM2242752 ,
GSM2242753 ,
GSM2242754 ,
GSM2242755 ,
GSM2242756 ,
GSM2242757 ,
GSM2242758 ,
GSM2242759 ,
GSM2242760 ,
GSM2242761 ,
GSM2242762 ,
GSM2327304 ,
GSM2327305 ,
GSM2327306 ,
GSM2327307 ,
GSM2327308 ,
GSM2327309 ,
GSM2327310 ,
GSM2327311 ,
GSM2327312 ,
GSM2327313 ,
GSM2327314 ,
GSM2327315 ,
GSM2327316 ,
GSM2327317 ,
GSM2327318 ,
GSM2452065 ,
GSM2452066 ,
GSM2452067 ,
GSM2452068 ,
GSM2452069 ,
GSM2452070 ,
GSM2452071 ,
GSM2501662 ,
GSM2501663 ,
GSM2501664 ,
GSM2501665 ,
GSM2501666 ,
GSM2501667 ,
GSM2501668 ,
GSM2501669 ,
GSM2648503 ,
GSM2648504 ,
GSM2648505 ,
GSM2648506 ,
GSM2648507 ,
GSM2648508 ,
GSM2648509 ,
GSM2648510 ,
GSM2648511 ,
GSM2648512 ,
GSM2648513 ,
GSM2648514 ,
GSM2648515 ,
GSM2648516 ,
GSM2648517 ,
GSM2648518 ,
GSM2648519 ,
GSM2648520 ,
GSM2648521 ,
GSM2648522 ,
GSM2648523 ,
GSM2648524 ,
GSM2648525 ,
GSM2698744 ,
GSM2698745 ,
GSM2698746 ,
GSM2698747 ,
GSM2698748 ,
GSM2698749 ,
GSM2698750 ,
GSM2698751 ,
GSM2698752 ,
GSM2698753 ,
GSM2698754 ,
GSM2698755 ,
GSM2698756 ,
GSM2698757 ,
GSM2698758 ,
GSM2698759 ,
GSM2698760 ,
GSM2698761 ,
GSM2698762 ,
GSM2698763 ,
GSM2698764 ,
GSM2698765 ,
GSM2698766 ,
GSM2698767 ,
GSM2698768 ,
GSM2698769 ,
GSM2698770 ,
GSM2698771 ,
GSM2698772 ,
GSM2698773 ,
GSM2698774 ,
GSM2698775 ,
GSM2698776 ,
GSM2698777 ,
GSM2698778 ,
GSM2698779 ,
GSM2698780 ,
GSM2698781 ,
GSM2698782 ,
GSM2698783 ,
GSM2698784 ,
GSM2698785 ,
GSM2698786 ,
GSM2698787 ,
GSM2698788 ,
GSM2698789 ,
GSM2698790 ,
GSM2698791 ,
GSM2698792 ,
GSM2698793 ,
GSM2698794 ,
GSM2698795 ,
GSM2698796 ,
GSM2698797 ,
GSM2698798 ,
GSM2698799 ,
GSM2698800 ,
GSM2698801 ,
GSM2698802 ,
GSM2698803 ,
GSM2698804 ,
GSM2698805 ,
GSM2698806 ,
GSM3024266 ,
GSM3024267 ,
GSM3024268 ,
GSM3024269 ,
GSM3024270 ,
GSM3024271 ,
GSM3024272 ,
GSM3024273 ,
GSM3032605 ,
GSM3032606 ,
GSM3032607 ,
GSM3032608 ,
GSM3032609 ,
GSM3032610 ,
GSM3032611 ,
GSM3032612 ,
GSM3032613 ,
GSM3258628 ,
GSM3258629 ,
GSM3258630 ,
GSM3258631 ,
GSM3258632 ,
GSM3258633 ,
GSM3258634 ,
GSM3258635 ,
GSM3258636 ,
GSM3258637 ,
GSM3258638 ,
GSM3258639 ,
GSM3331002 ,
GSM3331003 ,
GSM3331004 ,
GSM3331005 ,
GSM3331006 ,
GSM3331007 ,
GSM3331008 ,
GSM3331009 ,
GSM3331010 ,
GSM3331011 ,
GSM3331012 ,
GSM3331013 ,
GSM3331014 ,
GSM3331015 ,
GSM3331016 ,
GSM3331017 ,
GSM3331018 ,
GSM3331019 ,
GSM3331020 ,
GSM3331021 ,
GSM3426101 ,
GSM3426102 ,
GSM3426103 ,
GSM3426104 ,
GSM3426105 ,
GSM3426106 ,
GSM3426107 ,
GSM3426108 ,
GSM3426109 ,
GSM3426110 ,
GSM3426111 ,
GSM3426112 ,
GSM3426113 ,
GSM3426114 ,
GSM3426115 ,
GSM3426116 ,
GSM3426117 ,
GSM3426118 ,
GSM3426119 ,
GSM3426120 ,
GSM3426121 ,
GSM3426122 ,
GSM3426123 ,
GSM3426124 ,
GSM3426125 ,
GSM3426126 ,
GSM3426127 ,
GSM3426128 ,
GSM3426129 ,
GSM3426130 ,
GSM3426131 ,
GSM3426132 ,
GSM3426133 ,
GSM3426134 ,
GSM3426135 ,
GSM3426136 ,
GSM3426137 ,
GSM3426138 ,
GSM3426139 ,
GSM3426140 ,
GSM3712931 ,
GSM3712932 ,
GSM3712933 ,
GSM3712934 ,
GSM3712935 ,
GSM3712936 ,
GSM3712937 ,
GSM3712938 ,
GSM3712939 ,
GSM3712940 ,
GSM3712941 ,
GSM3712942 ,
GSM3712943 ,
GSM4043972 ,
GSM4043973 ,
GSM4043974 ,
GSM4043975 ,
GSM4043976 ,
GSM4043977 ,
GSM4043978 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (35)
GSE33414 Zebrafish macrophage stimulating protein (Msp) mutants compared to wild types at 3 and 6 dpf
GSE34716 Small Marine Neurotoxin Elicits Common Antibody Response in Zebrafish and Sea Lions
GSE39399 Ribosomal biogenesis genes play an essential and p53-independent role in pancreas development
GSE41333 Transcriptomic response of zebrafish embryos to Polyamidoamine (PAMAM) dendrimers
GSE41334 Transcriptomic analysis of dioxin like compounds
GSE41335 Transcriptomic analysis of Retinoic acid and 9 cis retinoic acid in zebrafish.
GSE42967 Wild-type Zebrafish subjected to swim-training
GSE53522 Toxicogenomic analysis of rural and urban air particles
GSE59031 Effects of LXR activation in zebrafish larvae
GSE59355 Translational profiling through biotinylation of tagged ribosomes in zebrafish
GSE64618 Gene expression analysis of maternal zygotic ezh2 mutant zebrafish embryos vs wildtype at 0 and 3.3 hpf
GSE67600 Differential hepatic gene expression in zebrafish (Danio rerio) exposed to the fungicide chlorothalonil reveals estrogenicity
GSE68124 Zebrafish liver: Tg(fabp10a:pt-beta-catenin) versus non-transgenic control siblings
GSE70261 Integrated analyses of zebrafish miRNA and mRNA expression profiles identify miR-29b and miR-223 as potential regulators of optic nerve regeneration
GSE71345 Agilent zebrafish V3 array 4ยด44K microarray-Ochratoxin A treated with 6-48 hpf zebrafish embryos
GSE71638 Molecular Characterization of Dieldrin in the Zebrafish (Danio rerio) Hypothalamus
GSE80957 Comparative analysis of the transcriptome responses of zebrafish embryos after exposure to low concentrations of essential and non-essential metals.
GSE84611 Expression profiling of control vs. ta/tbx16 double knockdown zebrafish embryos at shield and 90% epiboly
GSE84619 Microarray and ChIP-seq identification of Ta and Tbx16 target genes in zebrafish gastrulas and Mixl1 targets in blastulas
GSE87294 Dieldrin augments mTOR signaling and inhibits lysosomal acidification in the adult zebrafish heart (Danio rerio)
GSE93367 Treatment with a DNA methyltransferase inhibitor feminizes zebrafish and induces long-term expression changes in the gonads
GSE95312 3dpf untreated zebrafish larvae vs. 3dpf zebrafish larvae treated with 20mM PTZ for 30 minutes and 90 minutes
GSE99608 The pesticide fipronil affects transcriptional networks related to mitochondrial dysfunction and methylation in zebrafish embryos (Danio rerio)
GSE101058 Concentration dependent transcriptome responses of zebrafish embryos after exposure to cadmium, cobalt and copper.
GSE111158 Zebrafish BBB transcriptome
GSE111521 Light-dependent expression profiles in WT, DKO, and TKO zebrafish
GSE116700 Valdivieso A, Ribas L, Piferrer F. Ovarian transcriptomic signatures of zebrafish females resistant to different environmental perturbations.
GSE118496 Fecal transplants in zebrafish reveal effects of diet and microbiome on intestinal gene expression and enzyme activity.
GSE121101 Zebrafish larvae aryl hydrocarbon receptor ligands and inhibitor
GSE129433 Gene expression of zebrafish larvae upon treating with lalistat
GSE129434 Gene expression of zebrafish larvae upon treating with lalistat or U18666A
GSE136285 The model metabolic disruptor DEHP (bis(2-ethylhexyl) phthalate disregulates the gut transcriptome a key player in microbiome-gut axis
GSE146696 Tfam Knockdown Results in Reduction of mtDNA Copy Number, OXPHOS Deficiency and Abnormalities in Zebrafish Embryos
GSE179311 Skeletal muscle transcriptional adaptions to hypoxia and maximal exercise
GSE202646 Expression analysis of WT, dnmt3bb.2-/- and dnmt3aa-/-
Relations Alternative to
GPL14664 (Probe Name version)
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME (Spot identifier)
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID
Data table ID COL ROW NAME CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID 1
266
170
GE_BrightCorner
pos
--GE_BrightCorner
2
266
168
DarkCorner
pos
--DarkCorner
3
266
166
DarkCorner
pos
--DarkCorner
4
266
164
DarkCorner
pos
--DarkCorner
5
266
162
DarkCorner
pos
--DarkCorner
6
266
160
DarkCorner
pos
--DarkCorner
7
266
158
DarkCorner
pos
--DarkCorner
8
266
156
DarkCorner
pos
--DarkCorner
9
266
154
DarkCorner
pos
--DarkCorner
10
266
152
DarkCorner
pos
--DarkCorner
11
266
150
DarkCorner
pos
--DarkCorner
12
266
148
A_15_P488890
FALSE
XM_001339475 ENSDART00000144106
ens|ENSDART00000144106|ens|ENSDART00000138026|ens|ENSDART00000104135|tc|TC393856
chr6:41834496-41834437
Rep: Gamma-aminobutyric-acid receptor subunit alpha-5 precursor (GABA(A) receptor subunit alpha-5). - Danio rerio, complete [TC393856]
TTGTGATTCAGACCTACATGCCGTGCTTCATGACTGTCATTCTGTCCCAAGTCTCATTCT
13
266
146
A_15_P623980
FALSE
NM_001128401
NM_001128401 100150082
LOC100150082
F-box protein 16
Dr.151496
ENSDART00000045135
ref|NM_001128401|ref|NM_001017680|ens|ENSDART00000045135|gb|BC164389
Zv8_scaffold3048:8972-9562
Danio rerio F-box protein 16 (LOC100150082), mRNA [NM_001128401]
CCAAATCATTGATGTTTTTATCCCTGGATCTCAGTACAGCGGGAAAGCCAAGCCATAACA
14
266
144
A_15_P176171
FALSE
DQ223861 Dr.135816
ENSDART00000022733
ens|ENSDART00000022733|ens|ENSDART00000146892|gb|DQ223861|tc|TC371156
chr1:50540771-50539604
Danio rerio ATP-binding cassette transporter sub-family G member 2d (abcg2d) mRNA, complete cds. [DQ223861]
ATGATAGGTTTGAAGCCCACAGCATCTGCGTTCTTCATCTTCATGTTGACGGTGATTCTG
15
266
142
A_15_P156366
FALSE
XM_001335990
XM_001335990 ENSDART00000066836
ens|ENSDART00000066836|tc|NP13327383|ref|XM_001335990
chr24:4393557-4393616
GB
TGCTAGTGCAAAAGATGTATGCAGAGGAGCAGTACTACGTGTCAGGGAATGGAAATCAAG
16
266
140
A_15_P103686
FALSE
NM_194423
NM_194423 378477
ankrd6
ankyrin repeat domain 6
Dr.104285
ref|NM_194423|gb|AF395113|tc|NP415798
chr20:1271952-1271836
Danio rerio ankyrin repeat domain 6 (ankrd6), mRNA [NM_194423]
GO:0001702(gastrulation with mouth forming second)|GO:0007507(heart development)|GO:0008013(beta-catenin binding)|GO:0009953(dorsal/ventral pattern formation)|GO:0030178(negative regulation of Wnt receptor signaling pathway)|GO:0030877(beta-catenin destruction complex)|GO:0042074(cell migration involved in gastrulation)|GO:0046330(positive regulation of JNK cascade)|GO:0048264(determination of ventral identity)
GGAGGAAACACTTCTGGAGGAAGGACTGGAGGAAAGACTTCTGGAGGGAACACTTCTTGA
17
266
138
A_15_P197111
FALSE
NM_001082551
NM_001082551 100000709
whsc1
Wolf-Hirschhorn syndrome candidate 1
Dr.78031
ENSDART00000131150
ref|NM_001082551|ens|ENSDART00000131150|ens|ENSDART00000127036|ens|ENSDART00000009499
chr13:13175155-13174986
Danio rerio Wolf-Hirschhorn syndrome candidate 1 (whsc1), mRNA [NM_001082551]
GO:0005634(nucleus)|GO:0008168(methyltransferase activity)|GO:0008270(zinc ion binding)|GO:0010452(histone H3-K36 methylation)|GO:0016740(transferase activity)|GO:0018024(histone-lysine N-methyltransferase activity)|GO:0046872(metal ion binding)|GO:0048706(embryonic skeletal system development)|GO:0051216(cartilage development)
TGTTCAGTGCGAGGTTAATACAGAGCACAAGAAGAAAGGAAAGACAAATGCTGGGAAACG
18
266
136
A_15_P202611
FALSE
XM_681149
XM_681149 tc|TC391635|ref|XM_681149
chr17:12128086-12128027
Rep: G protein-coupled receptor 135 - Fugu rubripes (Japanese pufferfish) (Takifugu rubripes), partial (75%) [TC391635]
GO:0004930(G-protein coupled receptor activity)
TTAATCCTTTGATTTACGCCATAAGGAACCCGAATATATCCATGCTGTTGGGCCGGAGCA
19
266
134
A_15_P384550
FALSE
BC090742 321130
si:dkey-91i17.1
si:dkey-91i17.1
Dr.77944
gb|BC090742|tc|TC445269|tc|TC397897
chr16:15813782-15813729
Danio rerio si:dkey-91i17.1, mRNA (cDNA clone IMAGE:6909257), partial cds. [BC090742]
GO:0003723(RNA binding)|GO:0005575(cellular_component)|GO:0006364(rRNA processing)|GO:0008168(methyltransferase activity)|GO:0008757(S-adenosylmethionine-dependent methyltransferase activity)
TTCTTTTAAACTGTCTCGACGATTCTACCCCCACTCTCACAACATGGATGGGGTTTTTGC
20
266
132
A_15_P178631
FALSE
BC142821 556254
LOC556254
hypothetical LOC556254
Dr.104700
gb|BC142821|gb|BC129420|gb|BC122193|gb|XR_045111
chr10:37527753-37527694
Danio rerio cDNA clone IMAGE:7428827. [BC142821]
GTGTGTATTGATTTTGTCTCTTCTGTGATAGTACCGCAATAAATTTGTAAAACTGCTGTG
45220 18401 Kbytes .Supplementary data files not provided
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