GEO help: Mouse over screen elements for information.
Status
Public on Oct 14, 2011
Title
Agilent-028282 Whole Rat Genome Microarray 4x44K v3 (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Rattus norvegicus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Whole Rat Genome Microarray 4x44K v3
Submission date
Oct 14, 2011
Last update date
Nov 21, 2014
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (363)
GSM781722 , GSM781723 , GSM781724 , GSM781725 , GSM781726 , GSM781727
GSM781728 ,
GSM781729 ,
GSM781730 ,
GSM781731 ,
GSM781732 ,
GSM781733 ,
GSM781734 ,
GSM781735 ,
GSM781736 ,
GSM781737 ,
GSM781738 ,
GSM781739 ,
GSM942224 ,
GSM942225 ,
GSM942226 ,
GSM942227 ,
GSM942228 ,
GSM942229 ,
GSM942230 ,
GSM942231 ,
GSM1017588 ,
GSM1017589 ,
GSM1017590 ,
GSM1017591 ,
GSM1017592 ,
GSM1017593 ,
GSM1017594 ,
GSM1017595 ,
GSM1017596 ,
GSM1017597 ,
GSM1017598 ,
GSM1017599 ,
GSM1017600 ,
GSM1017601 ,
GSM1017602 ,
GSM1017603 ,
GSM1017604 ,
GSM1017605 ,
GSM1017606 ,
GSM1017607 ,
GSM1017608 ,
GSM1017609 ,
GSM1017610 ,
GSM1017611 ,
GSM1017612 ,
GSM1017613 ,
GSM1017614 ,
GSM1017615 ,
GSM1017616 ,
GSM1017617 ,
GSM1017618 ,
GSM1017619 ,
GSM1017620 ,
GSM1017621 ,
GSM1017622 ,
GSM1017623 ,
GSM1082438 ,
GSM1082439 ,
GSM1082440 ,
GSM1082441 ,
GSM1082442 ,
GSM1082443 ,
GSM1089097 ,
GSM1089098 ,
GSM1089099 ,
GSM1089100 ,
GSM1092673 ,
GSM1092674 ,
GSM1092675 ,
GSM1092676 ,
GSM1092677 ,
GSM1092678 ,
GSM1092679 ,
GSM1092680 ,
GSM1092681 ,
GSM1092682 ,
GSM1092683 ,
GSM1092684 ,
GSM1092685 ,
GSM1092686 ,
GSM1092687 ,
GSM1092688 ,
GSM1185258 ,
GSM1185259 ,
GSM1185260 ,
GSM1185261 ,
GSM1424821 ,
GSM1424822 ,
GSM1424823 ,
GSM1424824 ,
GSM1424825 ,
GSM1424826 ,
GSM1424827 ,
GSM1424828 ,
GSM1698090 ,
GSM1698091 ,
GSM1698092 ,
GSM1698093 ,
GSM1698094 ,
GSM1698095 ,
GSM1698096 ,
GSM1698097 ,
GSM1698098 ,
GSM1698099 ,
GSM1698100 ,
GSM1698101 ,
GSM1698102 ,
GSM1698103 ,
GSM1698104 ,
GSM1698105 ,
GSM1868702 ,
GSM1868703 ,
GSM1868704 ,
GSM1868705 ,
GSM1868706 ,
GSM1868707 ,
GSM1868708 ,
GSM1868709 ,
GSM1868710 ,
GSM1868711 ,
GSM1868712 ,
GSM1868713 ,
GSM1868714 ,
GSM1868715 ,
GSM1868716 ,
GSM1868717 ,
GSM1955262 ,
GSM1955263 ,
GSM1955264 ,
GSM1955265 ,
GSM1955266 ,
GSM1955267 ,
GSM1955268 ,
GSM1955269 ,
GSM1955270 ,
GSM1955271 ,
GSM1955272 ,
GSM1955273 ,
GSM1955274 ,
GSM1955275 ,
GSM1955276 ,
GSM1955277 ,
GSM1955278 ,
GSM1955279 ,
GSM1955280 ,
GSM1955281 ,
GSM1955282 ,
GSM1955283 ,
GSM1955284 ,
GSM1955285 ,
GSM1955286 ,
GSM1955287 ,
GSM1955288 ,
GSM1955289 ,
GSM1955290 ,
GSM1955291 ,
GSM1955292 ,
GSM1955293 ,
GSM1955294 ,
GSM1955295 ,
GSM1955296 ,
GSM1955297 ,
GSM1955298 ,
GSM1955299 ,
GSM1955300 ,
GSM1955301 ,
GSM1955302 ,
GSM1955303 ,
GSM1955304 ,
GSM1955305 ,
GSM1955306 ,
GSM1955307 ,
GSM1955308 ,
GSM1955309 ,
GSM1955310 ,
GSM1955311 ,
GSM1955312 ,
GSM1955313 ,
GSM1955314 ,
GSM1955315 ,
GSM1955316 ,
GSM1955317 ,
GSM1955318 ,
GSM1955319 ,
GSM1955320 ,
GSM1955321 ,
GSM1955322 ,
GSM1955323 ,
GSM1955324 ,
GSM1955325 ,
GSM1955326 ,
GSM1955327 ,
GSM1955328 ,
GSM1955329 ,
GSM1955330 ,
GSM1955331 ,
GSM1955332 ,
GSM1955333 ,
GSM1955334 ,
GSM1955335 ,
GSM1955336 ,
GSM1955337 ,
GSM1955338 ,
GSM1955339 ,
GSM1955340 ,
GSM1955341 ,
GSM1955342 ,
GSM1955343 ,
GSM1955344 ,
GSM2035861 ,
GSM2035862 ,
GSM2035863 ,
GSM2035864 ,
GSM2035865 ,
GSM2035866 ,
GSM2035867 ,
GSM2035868 ,
GSM2035869 ,
GSM2035870 ,
GSM2035871 ,
GSM2035872 ,
GSM2141906 ,
GSM2141907 ,
GSM2141908 ,
GSM2141909 ,
GSM2141910 ,
GSM2141911 ,
GSM2141912 ,
GSM2141913 ,
GSM2141914 ,
GSM2141915 ,
GSM2141916 ,
GSM2141917 ,
GSM2141918 ,
GSM2141919 ,
GSM2141920 ,
GSM2141921 ,
GSM2141922 ,
GSM2141923 ,
GSM2141924 ,
GSM2141925 ,
GSM2183611 ,
GSM2183612 ,
GSM2183613 ,
GSM2183614 ,
GSM2183615 ,
GSM2183616 ,
GSM2242187 ,
GSM2242188 ,
GSM2242189 ,
GSM2242190 ,
GSM2242191 ,
GSM2242192 ,
GSM2242193 ,
GSM2242194 ,
GSM2242195 ,
GSM2242196 ,
GSM2242197 ,
GSM2242198 ,
GSM2242199 ,
GSM2242200 ,
GSM2242201 ,
GSM2242202 ,
GSM2242203 ,
GSM2242204 ,
GSM2242205 ,
GSM2242206 ,
GSM2350292 ,
GSM2350293 ,
GSM2350294 ,
GSM2350295 ,
GSM2576409 ,
GSM2576410 ,
GSM2576411 ,
GSM2576412 ,
GSM2576413 ,
GSM2576414 ,
GSM2576415 ,
GSM2576416 ,
GSM2635742 ,
GSM2635743 ,
GSM2635744 ,
GSM2635745 ,
GSM2635746 ,
GSM2635747 ,
GSM2875418 ,
GSM2875419 ,
GSM2875420 ,
GSM2875421 ,
GSM2877065 ,
GSM2877066 ,
GSM2877067 ,
GSM2877068 ,
GSM2877069 ,
GSM2877070 ,
GSM2877071 ,
GSM2877072 ,
GSM3510160 ,
GSM3510161 ,
GSM3510162 ,
GSM3510163 ,
GSM3510164 ,
GSM3510165 ,
GSM3510166 ,
GSM3510167 ,
GSM3537856 ,
GSM3537857 ,
GSM3537858 ,
GSM3537859 ,
GSM3537860 ,
GSM3537861 ,
GSM3537862 ,
GSM3537863 ,
GSM3537871 ,
GSM3537872 ,
GSM3537873 ,
GSM3537874 ,
GSM3537875 ,
GSM3537876 ,
GSM3537877 ,
GSM3537878 ,
GSM3594188 ,
GSM3594189 ,
GSM3594190 ,
GSM3594191 ,
GSM3664768 ,
GSM3664769 ,
GSM3664770 ,
GSM3664771 ,
GSM3664772 ,
GSM3664773 ,
GSM3664774 ,
GSM3664775 ,
GSM3664776 ,
GSM3664777 ,
GSM3664778 ,
GSM3664779 ,
GSM3664780 ,
GSM3664781 ,
GSM3664782 ,
GSM3664783 ,
GSM3912156 ,
GSM3912157 ,
GSM3912158 ,
GSM3912159 ,
GSM3912160 ,
GSM3912161 ,
GSM3912162 ,
GSM3912163 ,
GSM3928257 ,
GSM3928258 ,
GSM3928259 ,
GSM3928260 ,
GSM3928261 ,
GSM3928262 ,
GSM3928263 ,
GSM3928264 Series (35)
GSE31457 Gene expression in the adrenal glands of two spontaneously hypertensive rat strains at 3 and 6 weeks of age
GSE38450 Analyzing the cytoskeletal transcriptome: sex differences in rat hypothalamus
GSE41452 Gene expression in the whole brains of two spontaneously hypertensive rat strains at 3 and 6 weeks of age
GSE41453 Gene expression in the kidneys of two spontaneously hypertensive rat strains at 3 and 6 weeks of age
GSE44289 Biphasic functional regulation in hippocampus of rat with chronic cerebral hypoperfusion induced by permanent occlusion of bilateral common carotid artery
GSE44699 Rat Pancreatic Tissue From Animals Fed Either an Iron Deficient or Iron Loaded vs. Iron Adequate Diet
GSE44858 PRENATAL EXPOSURE TO CORTICOSTEROIDS: HYPOTHALAMIC CHANGES RELEVANT FOR POSTNATAL BEHAVIORAL IMPAIRMENTS
GSE48822 Effect of IUGR on postnatal day 14 pancreatic islets
GSE59039 Transcriptomics of rat born to dams fed a diet deficient in methyl group donors
GSE60775 Transcriptomics and epigenomics of rat born to dams fed a diet deficient in methyl group donors
GSE69337 Differential expression produced by Pdrg1 gene silencing in rat hepatoma H35 cells
GSE72707 Genomic alterations during the progress of pulmonary hypertension
GSE75446 Testicular toxicity induced by carbendazim, iprodione, alone or in combination
GSE76694 Transcriptomic effects of prenatal exposure to corticosteroids on synaptic transmission
GSE81061 Remodeling of synaptic transmission genomic fabrics in a model of infantile spasms
GSE82112 Characterization of aldehyde dehydrogenase 1 high ovarian cancer cells: Towards targeted stem cell therapy [FNAR-C1]
GSE82305 Characterization of aldehyde dehydrogenase 1 high ovarian cancer cells: Towards targeted stem cell therapy
GSE84585 Remodeling of synaptic transmission genomic fabrics in the hypothalamic arcuate nucleus of a rat female model of infantile spasms
GSE88853 Gene expression analysis of hyper active mutant SPORTS rat [muscle]
GSE88854 Gene expression analysis of hyper active mutant SPORTS rat
GSE97740 Rat muscle atrophy
GSE99203 DNA array analysis in OLETF, a type 2 diabetic rats, and LETO, a non-diabetic control rats
GSE99411 Gene expression analysis in OLETF, a type 2 diabetic rats, and LETO, a non-diabetic control rats
GSE107658 Gender differences of gene expression profiles in brain cardiovascular centers of WKY rats [nucleus of solitarii tract]
GSE107659 Gender differences of gene expression profiles in brain cardiovascular centers of WKY rats [hypothalamus]
GSE107660 Gender differences of gene expression profiles in brain cardiovascular centers of WKY rats
GSE107725 Estrogen protects neurotransmission transcriptome during status epilepticus
GSE123721 Sex differences in the synaptic genomic fabrics of the rat hypothalamic paraventricular node
GSE124613 Prenatal betamethasone remodels the genomic fabrics of the synaptic transmission in the rat hypothalamic paraventricular nucleis
GSE124615 Recovery of the synaptic transmission genomic fabrics in the hypothalamic paraventricular nucleus of a rat model of autism treated with ACTH
GSE126246 Effect of liposome on gene expression of splenic macrophages
GSE128090 Recovery of the synaptic transmission genomic fabrics in the hypothalamic paraventricular nucleus of a rat model of autism treated with PMX53
GSE128091 Remodeling of synaptic transmission genomic fabrics in the hypothalamic paraventricular nucleus of a rat model of autism
GSE133563 Transcriptional profiling of the rat retina after optic nerve crush uncovers sustained activation of the complement cascade and Delta-Notch signaling pathways
GSE133843 A novel model for chronic rejection in vascularized composite allotransplantation identifies CXCL9-11 as potential biomarkers
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
A_64_P076162
A_64_P076162
FALSE
chr12:016640897-016640838
rn|12q11
ATTAACAGAACTATGGCATCTACCTCTTTAGACACCGTTATAGAGACCAGTGCACCTCCC
13
266
146
A_64_P002176
A_64_P002176
FALSE
NM_001170551
NM_001170551
305164
Wdfy3
WD repeat and FYVE domain containing 3
Rn.57981
ref|NM_001170551|gb|BC091187|gb|BC105833|tc|TC589574
chr14:9061671-9061730
rn|14p22
"Rattus norvegicus WD repeat and FYVE domain containing 3 (Wdfy3), mRNA [NM_001170551]"
"GO:0003831(beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity)|GO:0005488(binding)|GO:0005545(1-phosphatidylinositol binding)|GO:0005635(nuclear envelope)|GO:0005737(cytoplasm)|GO:0005776(autophagic vacuole)|GO:0008152(metabolic process)|GO:0019898(extrinsic to membrane)|GO:0044444(cytoplasmic part)|GO:0046872(metal ion binding)"
TTGTCGGCATTAACGCTTTCCACTTGAAAACTTGCTTTGCTTTCTCCTCCTCTTCGGTGT
14
266
144
A_42_P664913
A_42_P664913
FALSE
NM_001108400
NM_001108400
361149
Ankrd37
ankyrin repeat domain 37
Rn.21120
ENSRNOT00000039909
ref|NM_001108400|ens|ENSRNOT00000039909|gb|BC166884|tc|TC586760
chr16:49552226-49552285
rn|16q11
"Rattus norvegicus ankyrin repeat domain 37 (Ankrd37), mRNA [NM_001108400]"
GO:0004872(receptor activity)
AGAAGAGGCTTGAAGACGGGCTTCACTTCAGACAGATCTATAAGCCATTGCTTTGGCTTA
15
266
142
A_43_P13320
A_43_P13320
FALSE
NM_138880
NM_138880
25712
Ifng
interferon gamma
Rn.10795
ENSRNOT00000009919
ref|NM_138880|ens|ENSRNOT00000009919|gb|AF010466|tc|TC596982
chr7:57625663-57625722
rn|7q22
"Rattus norvegicus interferon gamma (Ifng), mRNA [NM_138880]"
"GO:0000060(protein import into nucleus, translocation)|GO:0000122(negative regulation of transcription from RNA polymerase II promoter)|GO:0001781(neutrophil apoptosis)|GO:0002026(regulation of the force of heart contraction)|GO:0002053(positive regulation of mesenchymal cell proliferation)|GO:0002250(adaptive immune response)|GO:0002302(CD8-positive, alpha-beta T cell differentiation involved in immune response)|GO:0003340(negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis)|GO:0005125(cytokine activity)|GO:0005133(interferon-gamma receptor binding)|GO:0005576(extracellular region)|GO:0005615(extracellular space)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0006925(inflammatory cell apoptosis)|GO:0006959(humoral immune response)|GO:0007050(cell cycle arrest)|GO:0008285(negative regulation of cell proliferation)|GO:0009615(response to virus)|GO:0019882(antigen processing and presentation)|GO:0030593(neutrophil chemotaxis)|GO:0030968(endoplasmic reticulum unfolded protein response)|GO:0031642(negative regulation of myelination)|GO:0032224(positive regulation of synaptic transmission, cholinergic)|GO:0032700(negative regulation of interleukin-17 production)|GO:0032735(positive regulation of interleukin-12 production)|GO:0032747(positive regulation of interleukin-23 production)|GO:0032760(positive regulation of tumor necrosis factor production)|GO:0033141(positive regulation of peptidyl-serine phosphorylation of STAT protein)|GO:0034393(positive regulation of smooth muscle cell apoptosis)|GO:0040008(regulation of growth)|GO:0042102(positive regulation of T cell proliferation)|GO:0042493(response to drug)|GO:0042511(positive regulation of tyrosine phosphorylation of Stat1 protein)|GO:0042742(defense response to bacterium)|GO:0042832(defense response to protozoan)|GO:0044130(negative regulation of growth of symbiont in host)|GO:0044146(negative regulation of growth of symbiont involved in interaction with host)|GO:0045080(positive regulation of chemokine biosynthetic process)|GO:0045084(positive regulation of interleukin-12 biosynthetic process)|GO:0045348(positive regulation of MHC class II biosynthetic process)|GO:0045410(positive regulation of interleukin-6 biosynthetic process)|GO:0045429(positive regulation of nitric oxide biosynthetic process)|GO:0045666(positive regulation of neuron differentiation)|GO:0045672(positive regulation of osteoclast differentiation)|GO:0045785(positive regulation of cell adhesion)|GO:0045893(positive regulation of transcription, DNA-dependent)|GO:0045944(positive regulation of transcription from RNA polymerase II promoter)|GO:0048304(positive regulation of isotype switching to IgG isotypes)|GO:0048662(negative regulation of smooth muscle cell proliferation)|GO:0050718(positive regulation of interleukin-1 beta secretion)|GO:0050776(regulation of immune response)|GO:0050796(regulation of insulin secretion)|GO:0051044(positive regulation of membrane protein ectodomain proteolysis)|GO:0051712(positive regulation of killing of cells of other organism)|GO:0060550(positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity)"
ATCCAGCACAAAGCTGTCAATGAACTCATCAGAGTGATTCACCAGCTGTCACCAGAATCT
16
266
140
A_64_P126523
A_64_P126523
FALSE
chrUn:038412933-038412874
AATTCATGTGTGGAATGGGGAGAGTGGTATAAAAGTAGCTGTACTGGATGGGAAGCACAC
17
266
138
A_64_P038045
A_64_P038045
FALSE
XM_002730109
XM_002730109
100361577
LOC100361577
rCG41835-like
Rn.145237
ref|XM_002730109|ref|XM_001069078
chrUn:39216207-39216266
"PREDICTED: Rattus norvegicus rCG41835-like (LOC100361577), mRNA [XM_002730109]"
ACAAAAACTTCATGGAGACTCCCACTGTCAGATACCTGAAGACAGGTTTCAAAGAGAACA
18
266
136
A_43_P11804
A_43_P11804
FALSE
NM_017066
NM_017066
24924
Ptn
pleiotrophin
Rn.1653
ENSRNOT00000016088
ref|NM_017066|ens|ENSRNOT00000016088|gb|M55601|gb|BC062013
chr4:64079286-64079227
rn|4q22
"Rattus norvegicus pleiotrophin (Ptn), mRNA [NM_017066]"
GO:0001503(ossification)|GO:0005576(extracellular region)|GO:0005783(endoplasmic reticulum)|GO:0007612(learning)|GO:0008083(growth factor activity)|GO:0008201(heparin binding)|GO:0030282(bone mineralization)|GO:0051781(positive regulation of cell division)
CTGTAATACTATTTAGGAAGTTGAGTTGTAGTACATGATAGATGGTAGGATTGAGGTAAG
19
266
134
A_44_P808710
A_44_P808710
FALSE
XM_001069205
XM_001069205
684158
LOC684158
similar to chromosome 1 open reading frame 36
Rn.216852
ref|XM_001069205|gb|BC166572|tc|TC624101
unmapped
"PREDICTED: Rattus norvegicus similar to chromosome 1 open reading frame 36 (LOC684158), mRNA [XM_001069205]"
ATGCCATTCACCTTATCCAGTCAGGGCACCTTTACTAGTAACCAGATGACATTCACTGCA
20
266
132
A_64_P142111
A_64_P142111
FALSE
NM_001100887
NM_001100887
300173
Gxylt1
glucoside xylosyltransferase 1
Rn.14826
ENSRNOT00000058349
ref|NM_001100887|ens|ENSRNOT00000058349|ens|ENSRNOT00000057020|gb|AY623036
chr7:131731764-131731705
rn|7q35
"Rattus norvegicus glucoside xylosyltransferase 1 (Gxylt1), mRNA [NM_001100887]"
"GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016266(O-glycan processing)|GO:0016757(transferase activity, transferring glycosyl groups)|GO:0016763(transferase activity, transferring pentosyl groups)|GO:0035252(UDP-xylosyltransferase activity)"
AGAAAATAGTAAAACTTAAAAGGAGGCAGTGTGTGTGTGCCAGTGTGTGAGTGTGAGTGA
45220 27495 Kbytes .Supplementary data files not provided
Less...
More...