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Platform GPL14850 Query DataSets for GPL14850
Status Public on Nov 09, 2011
Title NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 537603]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Annotation in this record based on UCSC Mus musculus 8, Feb 2006
Genomic regions bound by Hoxa9/Meis1 in hematopoietic cells, isothermal tiling oligos at 100bp

DESIGN_ID : 537603
native array description file: 100702_YH_MM8_regions_ChIP.ndf
native array description file: 100702_YH_MM8_regions_ChIP.pos
 
Submission date Nov 07, 2011
Last update date Nov 09, 2011
Contact name Yongsheng Huang
E-mail(s) huangys@umich.edu
Phone 5016583547
Organization name University of Michigan
Department Bioinformatics
Street address 100 Washtenaw Ave
City Ann Arbor
State/province MI
ZIP/Postal code 48105
Country USA
 
Samples (5) GSM829660, GSM829661, GSM829662, GSM829663, GSM829664
Series (2)
GSE33517 Epigenetic profiling of histone H3K4me1, H3K4me3, H3K27me3, H3ac, H4ac, CBP and P300 using ChIP-chip
GSE33518 Identification and characterization of Hoxa9 binding sites in hematopoietic cells

Data table header descriptions
ID PROBE_DESIGN_ID
SEQ_ID The NimbleGen sequence identifier
X X coordinate of probe on chip
Y Y coordinate of probe on chip
SEQUENCE Probe sequence
PROBE_ID PROBE_ID in NimbleGen
CHROMOSOME
RANGE_GB
POSITION Position of the PROBE SEQUENCE in the sequence/region of interest, starting from the left/5' end (MM8; NCBI Build 36)
LENGTH
GC

Data table
ID SEQ_ID X Y SEQUENCE PROBE_ID CHROMOSOME RANGE_GB POSITION LENGTH GC
537603_1010_0750 chr1:4774778-4777777 1010 750 GTTTGGGATTACAGCTCAGTGGTATAGTGTGCTTGAACAAACAAGCTAAGG CHR01FS004774787 chr1 NC_000067.4 4774787 51 0.43
537603_0269_0925 chr1:4774778-4777777 269 925 AGTGTGCTTGAACAAACAAGCTAAGGGCCTAAATTTAGTCTTCAGGAAAAAGCAGC CHR01FS004774812 chr1 NC_000067.4 4774812 56 0.41
537603_0040_0332 chr1:4774778-4777777 40 332 CTAAGGGCCTAAATTTAGTCTTCAGGAAAAAGCAGCTGGAACGGAAAAAGAA CHR01FS004774832 chr1 NC_000067.4 4774832 52 0.4
537603_0881_0197 chr1:4774778-4777777 881 197 CTGGAACGGAAAAAGAAAATCCTAGAACTAAACAGCCAAAACGAGGCTTGAG CHR01FS004774867 chr1 NC_000067.4 4774867 52 0.42
537603_0211_1143 chr1:4774778-4777777 211 1143 CCTAGAACTAAACAGCCAAAACGAGGCTTGAGTGACATTAAATGTTTTATTTT CHR01FS004774887 chr1 NC_000067.4 4774887 53 0.34
537603_0213_0599 chr1:4774778-4777777 213 599 TTTATTTTTAAATTAATCGTAAATATGTAATTAGATCACATATGGCTAAGGAAAA CHR01FS004774932 chr1 NC_000067.4 4774932 55 0.2
537603_0770_0656 chr1:4774778-4777777 770 656 TGTAATTAGATCACATATGGCTAAGGAAAACTCCAATTTTTGCTAGGGACACATTCTAA CHR01FS004774957 chr1 NC_000067.4 4774957 59 0.34
537603_0723_1115 chr1:4774778-4777777 723 1115 CTCCAATTTTTGCTAGGGACACATTCTAATTTCCTAAATTCCTAAAAGATAAGC CHR01FS004774987 chr1 NC_000067.4 4774987 54 0.33
537603_0816_0136 chr1:4774778-4777777 816 136 CTAATTTCCTAAATTCCTAAAAGATAAGCTCCTGGCAACTTGTCCCCCTCCA CHR01FS004775012 chr1 NC_000067.4 4775012 52 0.42
537603_0630_0902 chr1:4774778-4777777 630 902 AAGCTCCTGGCAACTTGTCCCCCTCCACAGAATTGTAAAACTGATGTGAA CHR01FS004775037 chr1 NC_000067.4 4775037 50 0.46
537603_0664_1014 chr1:4774778-4777777 664 1014 CACAGAATTGTAAAACTGATGTGAAATGATTAATTGCTTCGGTAAAGTTCCTCATGTAGC CHR01FS004775062 chr1 NC_000067.4 4775062 60 0.35
537603_0160_1334 chr1:4774778-4777777 160 1334 ATGATTAATTGCTTCGGTAAAGTTCCTCATGTAGCTGTAAGTTCCCCAGAAATAAA CHR01FS004775087 chr1 NC_000067.4 4775087 56 0.36
537603_0301_0055 chr1:4774778-4777777 301 55 GTAGCTGTAAGTTCCCCAGAAATAAAGTAATTGCGACCTTTCAAAGCCCTC CHR01FS004775117 chr1 NC_000067.4 4775117 51 0.43
537603_0099_0803 chr1:4774778-4777777 99 803 TTGCGACCTTTCAAAGCCCTCCACCTTCTACCCCTTTAACCTGGGCCTAA CHR01FS004775147 chr1 NC_000067.4 4775147 50 0.52
537603_0937_0801 chr1:4774778-4777777 937 801 CCACCTTCTACCCCTTTAACCTGGGCCTAAGGGGAATTGTGGTTGGCTGC CHR01FS004775167 chr1 NC_000067.4 4775167 50 0.56
537603_0320_0092 chr1:4774778-4777777 320 92 ATTGTGGTTGGCTGCACTATAACATTAAAAAATTGGCTAATTACAACTGGATAGAGTC CHR01FS004775202 chr1 NC_000067.4 4775202 58 0.34
537603_0046_0006 chr1:4774778-4777777 46 6 TAAAAAATTGGCTAATTACAACTGGATAGAGTCGGGTAGTCTTTCGGTGTTCTC CHR01FS004775227 chr1 NC_000067.4 4775227 54 0.39
537603_0406_0266 chr1:4774778-4777777 406 266 ATAGAGTCGGGTAGTCTTTCGGTGTTCTCTAACTCCGTAACATCTTTCCC CHR01FS004775252 chr1 NC_000067.4 4775252 50 0.46
537603_0473_0501 chr1:4774778-4777777 473 501 TCTCTAACTCCGTAACATCTTTCCCTTAATTGACTTTGTCAACCGCCCCC CHR01FS004775277 chr1 NC_000067.4 4775277 50 0.46
537603_0369_0343 chr1:4774778-4777777 369 343 CTAAAAAAAAAGCCGTATATTAAGTTACTGTAAAAGCCGAGCAGCCGACCCA CHR01FS004775331 chr1 NC_000067.4 4775331 52 0.4

Total number of rows: 706029

Table truncated, full table size 106468 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL14850_100702_YH_MM8_regions_ChIP.ndf.gz 46.7 Mb (ftp)(http) NDF
GPL14850_100702_YH_MM8_regions_ChIP.pos.gz 5.4 Mb (ftp)(http) POS

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