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Status
Public on Nov 22, 2011
Title
UCSF/Sil lab-Histoplasma capsulatum-G217Borfs2
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Histoplasma capsulatum Manufacturer
Sil Lab, UCSF
Manufacture protocol
Spotted using DeRisi arrayer in Center for Advanced Technology, Genentech Hall, Mission Bay. 70-mer oligonucleotides representing each predicted gene are resuspended in 3XSSC and spotted on poly-lysine slides purchased from Erie Scientific.
Support
glass
Coating
poly-lysine
Description
This is a revision of UCSF/Sil lab-Histoplasma capsulatum-G217Bprint2 (GEO accession GPL6125) adding 15 oligos relative to the original design. The new oligo IDs are prefixed with G217Borfs2. G217Borfs2.38n17 targets MS8 (GenBank AF292398) which is incorrectly merged with HISTO_ZT.Contig181-snap.97 in the predicted gene set, and the remaining 14 target novel transcripts identified during preliminary analysis of whole genome tiling array data (published with a revised and expanded set of novel transcripts in BMC Microbiol. 11:216).
Contributor(s)
Foo CK , Sil A , Voorhies M , Inglis DO Submission date
Nov 17, 2011
Last update date
Nov 22, 2011
Contact name
Mark Voorhies
E-mail(s)
mark.voorhies@ucsf.edu Organization name
University of California
Department
Microbiology and Immunology
Lab
Anita Sil
Street address
513 Parnassus, S472
City
San Francisco
State/province
CA
ZIP/Postal code
94143-0414
Country
USA
Samples (80)
GSM835834 , GSM835835 , GSM835836 , GSM835837 , GSM835838 , GSM835839
GSM835840 ,
GSM835841 ,
GSM835842 ,
GSM835843 ,
GSM835844 ,
GSM835845 ,
GSM835846 ,
GSM835847 ,
GSM835848 ,
GSM835849 ,
GSM835850 ,
GSM835851 ,
GSM835852 ,
GSM835853 ,
GSM1103958 ,
GSM1103959 ,
GSM1103960 ,
GSM1103961 ,
GSM1103962 ,
GSM1103963 ,
GSM1103964 ,
GSM1103965 ,
GSM1141539 ,
GSM1141540 ,
GSM1141541 ,
GSM1141542 ,
GSM1141543 ,
GSM1141544 ,
GSM1141545 ,
GSM1141546 ,
GSM1141547 ,
GSM1141548 ,
GSM1141549 ,
GSM1141550 ,
GSM1141551 ,
GSM1141552 ,
GSM1141553 ,
GSM1141554 ,
GSM1141573 ,
GSM1141574 ,
GSM1141575 ,
GSM1141576 ,
GSM1141577 ,
GSM1141578 ,
GSM1141579 ,
GSM1141580 ,
GSM1141581 ,
GSM1141582 ,
GSM1141583 ,
GSM1141584 ,
GSM1141585 ,
GSM1141586 ,
GSM1141587 ,
GSM1141588 ,
GSM1141589 ,
GSM1141590 ,
GSM1141591 ,
GSM1141592 ,
GSM1141593 ,
GSM1141594 ,
GSM1141595 ,
GSM1141596 ,
GSM1141597 ,
GSM1141598 ,
GSM1141599 ,
GSM1141600 ,
GSM1141601 ,
GSM1141602 ,
GSM1141603 ,
GSM1141604 ,
GSM1141605 ,
GSM1141606 ,
GSM1141607 ,
GSM1141608 Series (6)
GSE33792 SRE1 Regulates Iron-Dependent Gene Expression in the Fungal Pathogen Histoplasma capsulatum
GSE45415 Comparative transcriptomics of infectious spores from the fungal pathogen Histoplasma capsulatum G217B
GSE45432 Comparative transcriptomics of infectious spores from the fungal pathogen Histoplasma capsulatum
GSE46936 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen -- T-DNA mutants (1)
GSE46938 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen -- RNAi mutants (1)
GSE47832 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen
Data table header descriptions ID Target Target or negative control name. Where the target is a predicted gene, names correspond to the predicted gene set from the Genome Sequencing Center (GSC) at Washington University. Numerical suffixes are offsets for the oligo relative to the target start, as reported by Array Oligo Selector. Targets based on whole genome tiling arrays are prefixed with WGTA.
SPOT_ID HistoBase
SEQUENCE BLOCK Block on spotted array, corresponding to a single print tip.
ROW Row position within block.
COL Column position within block.
Data table ID Target SPOT_ID SEQUENCE BLOCK ROW COL G217Borfs1.10a1
HISTO_DM.Contig933.Fgenesh_Neurospora.175.final_new_72
G217Borfs1.10a1 GGTGGAAGAGGCTCGGTATCAAAGATCTTGTTTGGGTCGAGTACAAATGTTATAACAGGCAGCGCATTGA
4
5
17
G217Borfs1.10a10
HISTO_DM.Contig933.Fgenesh_Neurospora.33.final_new_98
G217Borfs1.10a10 CTCCGAAAATACCACCAGCCACTACGAAGGAGACATCACGATCCCTGTGGCGTTTCATATGCAGAGTAAC
8
5
18
G217Borfs1.10a11
HISTO_DM.Contig933.Fgenesh_Neurospora.33.final_new_89
G217Borfs1.10a11 AACGTGGAGCTCCGAAAATACCACCAGCCACTACGAAGGAGACATCACGATCCCTGTGGCGTTTCATATG
12
5
18
G217Borfs1.10a12
HISTO_DM.Contig933.Fgenesh_Neurospora.42.final_new_2690
G217Borfs1.10a12 TGCGGATCTTGTGTGCGAGCGCGCCAGACGTTATTTGAGTAGGTATTTTGACGTGACGCCTGAAACTAGT
16
5
18
G217Borfs1.10a13
HISTO_DM.Contig933.Fgenesh_Neurospora.6.final_new_63
G217Borfs1.10a13 TACGGCACGAGGCACCTTATGAGGCACATCAGGCATAGTACATACAAGTTCATAATATTTTCCCAACCGG
20
5
18
G217Borfs1.10a14
HISTO_DM.Contig933.Fgenesh_Neurospora.6.final_new_74
G217Borfs1.10a14 GCACCTTATGAGGCACATCAGGCATAGTACATACAAGTTCATAATATTTTCCCAACCGGTAATAGGCGGC
24
5
18
G217Borfs1.10a15
HISTO_DM.Contig933.Fgenesh_Neurospora.67.final_new_10
G217Borfs1.10a15 CAACGTCAGGAAATAAAGCCTCCCACTGCTGCCTTGGACGGATTGACCCCGTTAACGTTAAGGAGATGTA
28
5
18
G217Borfs1.10a16
HISTO_DM.Contig933.Fgenesh_Neurospora.67.final_new_3
G217Borfs1.10a16 TACAGATCAACGTCAGGAAATAAAGCCTCCCACTGCTGCCTTGGACGGATTGACCCCGTTAACGTTAAGG
32
5
18
G217Borfs1.10a17
HISTO_DM.Contig933.Fgenesh_Neurospora.8.final_new_101
G217Borfs1.10a17 TGCTCTCTTCAACGATTCGCCCGCCACAACCGCGCCACAGCCTCTGGCGTCCTCCCATCTTCAGGGCTCC
4
5
19
G217Borfs1.10a18
HISTO_DM.Contig933.Fgenesh_Neurospora.8.final_new_9
G217Borfs1.10a18 CGCCGCCTGGACGAGAGACCAATGTCCTGTACCAGCGGGGTCTCTCGGAATCAAGCTCTGCAGACTACAG
8
5
19
G217Borfs1.10a19
HISTO_DM.Contig933.Fgenesh_Neurospora.81.final_new_1578
G217Borfs1.10a19 GAGCGGGGCAAGCCATTGAGACATGTGGTATATTTAGAAGAAGGGATCAAGGAGTCGGTGGTAGAAGAGC
12
5
19
G217Borfs1.10a2
HISTO_DM.Contig933.Fgenesh_Neurospora.178.final_new_46
G217Borfs1.10a2 TTGTTTCGTTCTCGGGCGTGGATTCACTCGATGCCGATTTGTGGTTTCATCAATTTGTTTCATTGATATC
8
5
17
G217Borfs1.10a20
HISTO_DM.Contig933.Fgenesh_Neurospora.87.final_new_157
G217Borfs1.10a20 GAGCCAGCTCGCTGAAAATGGGCGCCGATAAACAAAATACTTTGGAAGAAGCGTGGTTGATCAGTAATAA
16
5
19
G217Borfs1.10a21
HISTO_DM.Contig933.Fgenesh_Neurospora.9.final_new_72
G217Borfs1.10a21 TGGTCCATCCAATTCAACCGATTGCGCAACACTCGTCGCGCCAAGGAGCCGGTAAAAAGAAGCCAACAGT
20
5
19
G217Borfs1.10a22
HISTO_DM.Contig933.Fgenesh_Neurospora.9.final_new_63
G217Borfs1.10a22 CACCCCACCTGGTCCATCCAATTCAACCGATTGCGCAACACTCGTCGCGCCAAGGAGCCGGTAAAAAGAA
24
5
19
G217Borfs1.10a23
HISTO_DM.Contig933.Fgenesh_Neurospora.94.final_new_246
G217Borfs1.10a23 AAGGATTCACCGTGTTCTGTCGATGAAAAAACTGGGTGGAGCGGCCGCAGTGGCGCCGTAACAAGAAGTA
28
5
19
G217Borfs1.10a24
HISTO_DM.Contig933.Fgenesh_Neurospora.99.final_new_61
G217Borfs1.10a24 CCGTGTGTGTTCTAGATAGGAAGACCTCCCGGCGAAACTCCGTTGTCAAACCCTCATATTTGATGGTCAA
32
5
19
G217Borfs1.10a3
HISTO_DM.Contig933.Fgenesh_Neurospora.178.final_new_55
G217Borfs1.10a3 TCTCGGGCGTGGATTCACTCGATGCCGATTTGTGGTTTCATCAATTTGTTTCATTGATATCGAGAACTCG
12
5
17
G217Borfs1.10a4
HISTO_DM.Contig933.Fgenesh_Neurospora.18.final_new_24
G217Borfs1.10a4 GCTGATGGGATTGTCGTATTCAAGCCCTTCGACGTTGCGTCACCTCAAGGTTGTATATCAAACGTTGGGC
16
5
17
G217Borfs1.10a5
HISTO_DM.Contig933.Fgenesh_Neurospora.182.final_new_769
G217Borfs1.10a5 TGACCGGTTCCCCCATCTTCAGAAAACTCGAAAGGCTACGGATGGTTGAGTTGCCTTATGCATCGCTACC
20
5
17
14976 2311 Kbytes .Supplementary data files not provided
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