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Platform GPL15207 Query DataSets for GPL15207
Status Public on Feb 11, 2012
Title [PrimeView] Affymetrix Human Gene Expression Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix, Inc.
Manufacture protocol See details from Affymetrix. This is a commercially available chip.
Catalog number 901837
 
Description July 10, 2019: annotation table updated with netaffx build 36
 
Submission date Feb 08, 2012
Last update date Mar 24, 2021
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (10731) GSM872430, GSM872431, GSM872432, GSM872433, GSM940993, GSM940994 
Series (510)
GSE35663 Oncogeneic KRAS Regulates BMP4 Expression in Colon Cancer
GSE38380 Gene expression data ARID1A knockdown OE33 cells versus mock OE33 cells
GSE39693 Expression data from MCF7 and HCC1937 cells long-term treated with everolimus
Relations
Alternative to GPL19660 (Alternative CDF [Brainarray version 18])
Alternative to GPL23342 (Alternative CDF)
Alternative to GPL24267
Alternative to GPL21975 (Alternative CDF [Brainarray ENTREZG Version 17])
Alternative to GPL25487 (Alternative CDF [Brainarray ENTREZG Version 22])
Alternative to GPL29838 (Alternative CDF [primeviewhsentrezgaltrabio183465])
Alternative to GPL29913 (Alternative CDF [primeviewhsentrezgaltrabio183641.cdf])

Data table header descriptions
ID
GeneChip Array
Species Scientific Name
Annotation Date
Sequence Type
Sequence Source
Transcript ID(Array Design)
Target Description
GB_ACC Representative GenBank or RefSeq accession
GI Representative GenBank identifier
Representative Public ID
Archival UniGene Cluster
UniGene ID
Genome Version
Alignments
Gene Title
Gene Symbol
Chromosomal Location
Unigene Cluster Type
Ensembl
Entrez Gene
SwissProt
EC
OMIM
RefSeq Protein ID
RefSeq Transcript ID
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
Pathway
InterPro
Annotation Description
Annotation Transcript Cluster
Transcript Assignments
Annotation Notes
SPOT_ID

Data table
ID GeneChip Array Species Scientific Name Annotation Date Sequence Type Sequence Source Transcript ID(Array Design) Target Description GB_ACC GI Representative Public ID Archival UniGene Cluster UniGene ID Genome Version Alignments Gene Title Gene Symbol Chromosomal Location Unigene Cluster Type Ensembl Entrez Gene SwissProt EC OMIM RefSeq Protein ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function Pathway InterPro Annotation Description Annotation Transcript Cluster Transcript Assignments Annotation Notes SPOT_ID
11715100_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g21264570 g21264570 /TID=g21264570 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g21264570 /REP_ORG=Homo sapiens 21264570 g21264570 --- Hs.247813 February 2009 (Genome Reference Consortium GRCh37) chr6:26271145-26271612 (-) // 100.0 // p22.2 histone cluster 1, H3g HIST1H3G chr6p22.2 full length ENSG00000273983 /// OTTHUMG00000014436 8355 P68431 --- 602815 NP_003525 NM_003534 0000183 // chromatin silencing at rDNA // traceable author statement /// 0002230 // positive regulation of defense response to virus by host // inferred from mutant phenotype /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006334 // nucleosome assembly // inferred from mutant phenotype /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031047 // gene silencing by RNA // traceable author statement /// 0032776 // DNA methylation on cytosine // traceable author statement /// 0040029 // regulation of gene expression, epigenetic // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045814 // negative regulation of gene expression, epigenetic // traceable author statement /// 0051290 // protein heterotetramerization // inferred from direct assay /// 0060968 // regulation of gene silencing // inferred from direct assay /// 0098792 // xenophagy // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from direct assay /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation --- IPR007125 // Histone H2A/H2B/H3 // 9.3E-34 /// IPR007125 // Histone H2A/H2B/H3 // 1.7E-37 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 4 transcripts. // false // Matching Probes // A ENST00000614378(11),NM_003534(11),OTTHUMT00000040099(11),uc003nhi.3 ENST00000614378 // ensembl_havana_transcript:known chromosome:GRCh38:6:26269405:26271815:-1 gene:ENSG00000273983 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_003534 // Homo sapiens histone cluster 1, H3g (HIST1H3G), mRNA. // refseq // 11 // --- /// OTTHUMT00000040099 // otter:known chromosome:VEGA61:6:26269405:26271815:-1 gene:OTTHUMG00000014436 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc003nhi.3 // --- // ucsc_genes // 11 // --- ---
11715101_s_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g21264570 g21264570 /TID=g21264570 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g21264570 /REP_ORG=Homo sapiens 21264570 g21264570 --- Hs.247813 February 2009 (Genome Reference Consortium GRCh37) chr6:26271145-26271612 (-) // 100.0 // p22.2 histone cluster 1, H3g HIST1H3G chr6p22.2 full length ENSG00000273983 /// OTTHUMG00000014436 8355 P68431 --- 602815 NP_003525 NM_003534 0000183 // chromatin silencing at rDNA // traceable author statement /// 0002230 // positive regulation of defense response to virus by host // inferred from mutant phenotype /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006334 // nucleosome assembly // inferred from mutant phenotype /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031047 // gene silencing by RNA // traceable author statement /// 0032776 // DNA methylation on cytosine // traceable author statement /// 0040029 // regulation of gene expression, epigenetic // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045814 // negative regulation of gene expression, epigenetic // traceable author statement /// 0051290 // protein heterotetramerization // inferred from direct assay /// 0060968 // regulation of gene silencing // inferred from direct assay /// 0098792 // xenophagy // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from direct assay /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation --- IPR007125 // Histone H2A/H2B/H3 // 9.3E-34 /// IPR007125 // Histone H2A/H2B/H3 // 1.7E-37 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 4 transcripts. // false // Matching Probes // A ENST00000614378(11),NM_003534(11),OTTHUMT00000040099(11),uc003nhi.3 ENST00000614378 // ensembl_havana_transcript:known chromosome:GRCh38:6:26269405:26271815:-1 gene:ENSG00000273983 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000029819 // cdna:genscan chromosome:GRCh38:6:26270974:26271384:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_003534 // Homo sapiens histone cluster 1, H3g (HIST1H3G), mRNA. // refseq // 11 // --- /// OTTHUMT00000040099 // otter:known chromosome:VEGA61:6:26269405:26271815:-1 gene:OTTHUMG00000014436 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc003nhi.3 // --- // ucsc_genes // 11 // --- ---
11715102_x_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g21264570 g21264570 /TID=g21264570 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g21264570 /REP_ORG=Homo sapiens 21264570 g21264570 --- Hs.247813 February 2009 (Genome Reference Consortium GRCh37) chr6:26271145-26271612 (-) // 100.0 // p22.2 histone cluster 1, H3g HIST1H3G chr6p22.2 full length ENSG00000273983 /// OTTHUMG00000014436 8355 P68431 --- 602815 NP_003525 NM_003534 0000183 // chromatin silencing at rDNA // traceable author statement /// 0002230 // positive regulation of defense response to virus by host // inferred from mutant phenotype /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006334 // nucleosome assembly // inferred from mutant phenotype /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031047 // gene silencing by RNA // traceable author statement /// 0032776 // DNA methylation on cytosine // traceable author statement /// 0040029 // regulation of gene expression, epigenetic // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045814 // negative regulation of gene expression, epigenetic // traceable author statement /// 0051290 // protein heterotetramerization // inferred from direct assay /// 0060968 // regulation of gene silencing // inferred from direct assay /// 0098792 // xenophagy // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from direct assay /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation --- IPR007125 // Histone H2A/H2B/H3 // 9.3E-34 /// IPR007125 // Histone H2A/H2B/H3 // 1.7E-37 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 4 transcripts. // false // Matching Probes // A ENST00000614378(11),NM_003534(11),OTTHUMT00000040099(11),uc003nhi.3 ENST00000614378 // ensembl_havana_transcript:known chromosome:GRCh38:6:26269405:26271815:-1 gene:ENSG00000273983 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_003534 // Homo sapiens histone cluster 1, H3g (HIST1H3G), mRNA. // refseq // 11 // --- /// OTTHUMT00000040099 // otter:known chromosome:VEGA61:6:26269405:26271815:-1 gene:OTTHUMG00000014436 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc003nhi.3 // --- // ucsc_genes // 11 // --- GENSCAN00000029819 // ensembl // 4 // Cross Hyb Matching Probes
11715103_x_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g22748780 g22748780 /TID=g22748780 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g22748780 /REP_ORG=Homo sapiens 22748780 g22748780 --- Hs.465643 February 2009 (Genome Reference Consortium GRCh37) chr19:4639529-5145579 (+) // 48.53 // p13.3 tumor necrosis factor, alpha-induced protein 8-like 1 TNFAIP8L1 chr19p13.3 full length ENSG00000185361 /// OTTHUMG00000182013 126282 Q8WVP5 --- 615869 NP_001161414 /// NP_689575 /// XP_005259544 /// XP_011525982 NM_001167942 /// NM_152362 /// XM_005259487 /// XM_011527680 0032007 // negative regulation of TOR signaling // not recorded /// 0032007 // negative regulation of TOR signaling // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction --- IPR008477 // Protein of unknown function DUF758 // 8.4E-86 /// IPR008477 // Protein of unknown function DUF758 // 6.8E-90 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 9 transcripts. // false // Matching Probes // A BC017672(11),BC044250(9),ENST00000327473(11),ENST00000536716(11),NM_001167942(11),NM_152362(11),OTTHUMT00000458662(11),uc002max.3,uc021une.1 BC017672 // Homo sapiens tumor necrosis factor, alpha-induced protein 8-like 1, mRNA (cDNA clone MGC:17791 IMAGE:3885999), complete cds. // gb // 11 // --- /// BC044250 // accn=BC044250 class=mRNAlike lncRNA name=Human lncRNA ref=JounralRNA transcriptId=673 cpcScore=-0.1526100 cnci=-0.1238602 // noncode // 9 // --- /// BC044250 // Homo sapiens tumor necrosis factor, alpha-induced protein 8-like 1, mRNA (cDNA clone IMAGE:5784807). // gb // 9 // --- /// ENST00000327473 // ensembl_havana_transcript:known chromosome:GRCh38:19:4639518:4655568:1 gene:ENSG00000185361 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000536716 // ensembl:known chromosome:GRCh38:19:4640017:4655568:1 gene:ENSG00000185361 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001167942 // Homo sapiens tumor necrosis factor, alpha-induced protein 8-like 1 (TNFAIP8L1), transcript variant 1, mRNA. // refseq // 11 // --- /// NM_152362 // Homo sapiens tumor necrosis factor, alpha-induced protein 8-like 1 (TNFAIP8L1), transcript variant 2, mRNA. // refseq // 11 // --- /// NONHSAT060631 // Non-coding transcript identified by NONCODE: Exonic // noncode // 9 // --- /// OTTHUMT00000458662 // otter:known chromosome:VEGA61:19:4639518:4655568:1 gene:OTTHUMG00000182013 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc002max.3 // --- // ucsc_genes // 11 // --- /// uc021une.1 // --- // ucsc_genes // 11 // --- ---
11715104_s_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g30039713 g30039713 /TID=g30039713 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g30039713 /REP_ORG=Homo sapiens 30039713 g30039713 --- Hs.352515 February 2009 (Genome Reference Consortium GRCh37) chr17:72920369-72929640 (+) // 100.0 // q25.1 otopetrin 2 OTOP2 chr17q25.1 full length ENSG00000183034 /// OTTHUMG00000179215 92736 Q7RTS6 --- 607827 NP_835454 /// XP_011523781 NM_178160 /// XM_011525479 --- 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation --- --- IPR004878 // Otopetrin // 9.4E-43 /// IPR004878 // Otopetrin // 9.4E-43 /// IPR004878 // Otopetrin // 9.4E-43 /// IPR004878 // Otopetrin // 3.9E-18 /// IPR004878 // Otopetrin // 3.8E-20 /// IPR004878 // Otopetrin // 5.2E-16 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 6 transcripts. // false // Matching Probes // A ENST00000331427(11),ENST00000580223(11),NM_178160(11),OTTHUMT00000445306(11),uc010wrp.2,XM_011525479(11) ENST00000331427 // ensembl:known chromosome:GRCh38:17:74924275:74933911:1 gene:ENSG00000183034 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000580223 // havana:known chromosome:GRCh38:17:74924603:74933912:1 gene:ENSG00000183034 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000013715 // cdna:genscan chromosome:GRCh38:17:74924633:74933545:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_178160 // Homo sapiens otopetrin 2 (OTOP2), mRNA. // refseq // 11 // --- /// OTTHUMT00000445306 // otter:known chromosome:VEGA61:17:74924603:74933912:1 gene:OTTHUMG00000179215 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc010wrp.2 // --- // ucsc_genes // 11 // --- /// XM_011525479 // PREDICTED: Homo sapiens otopetrin 2 (OTOP2), transcript variant X1, mRNA. // refseq // 11 // --- ---
11715105_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g45580703 g45580703 /TID=g45580703 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g45580703 /REP_ORG=Homo sapiens 45580703 g45580703 --- Hs.439154 February 2009 (Genome Reference Consortium GRCh37) chr17:35732984-35749660 (+) // 98.15 // q12 chromosome 17 open reading frame 78 C17orf78 chr17q12 full length ENSG00000278145 /// ENSG00000278505 /// OTTHUMG00000188467 /// OTTHUMG00000191246 284099 Q8N4C9 --- --- NP_775896 /// XP_011522949 /// XP_011522950 /// XP_011522951 /// XP_011522952 /// XP_011545103 /// XP_011545104 /// XP_011545105 /// XP_011545106 NM_173625 /// XM_011524647 /// XM_011524648 /// XM_011524649 /// XM_011524650 /// XM_011546801 /// XM_011546802 /// XM_011546803 /// XM_011546804 --- 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation --- --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 12 transcripts. // false // Matching Probes // A AK096966(10),BC034672(11),ENST00000611038(11),ENST00000615133(11),ENST00000616425(11),ENST00000631822(11),NM_173625(11),OTTHUMT00000477339(11),OTTHUMT00000477340(11),OTTHUMT00000487254(11),OTTHUMT00000487255(11),uc002hns.3 AK096966 // Homo sapiens cDNA FLJ39647 fis, clone SMINT2004781. // gb // 10 // --- /// BC034672 // Homo sapiens chromosome 17 open reading frame 78, mRNA (cDNA clone MGC:34759 IMAGE:5184947), complete cds. // gb // 11 // --- /// ENST00000611038 // havana:known chromosome:GRCh38:17:37375986:37392706:1 gene:ENSG00000278505 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000615133 // ensembl_havana_transcript:known chromosome:GRCh38:17:37376043:37392708:1 gene:ENSG00000278505 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000616425 // ensembl_havana_transcript:known chromosome:GRCh38:CHR_HSCHR17_7_CTG4:37377518:37394195:1 gene:ENSG00000278145 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000631822 // havana:known chromosome:GRCh38:CHR_HSCHR17_7_CTG4:37377461:37394193:1 gene:ENSG00000278145 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_173625 // Homo sapiens chromosome 17 open reading frame 78 (C17orf78), mRNA. // refseq // 11 // --- /// OTTHUMT00000477339 // otter:putative chromosome:VEGA61:17:37375986:37392706:1 gene:OTTHUMG00000188467 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000477340 // otter:known chromosome:VEGA61:17:37376043:37392708:1 gene:OTTHUMG00000188467 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000487254 // otter:putative chromosome:VEGA61:HSCHR17_7_CTG4:1611993:1628725:1 gene:OTTHUMG00000191246 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000487255 // otter:known chromosome:VEGA61:HSCHR17_7_CTG4:1612050:1628727:1 gene:OTTHUMG00000191246 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc002hns.3 // --- // ucsc_genes // 11 // --- ---
11715106_x_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g56847633 g56847633 /TID=g56847633 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g56847633 /REP_ORG=Homo sapiens 56847633 g56847633 --- Hs.450233 /// Hs.676333 February 2009 (Genome Reference Consortium GRCh37) chr7:143268889-143271244 (+) // 100.0 // q35 /// chr7:143880575-143882930 (+) // 98.34 // q35 /// chr6:132029823-132032178 (-) // 98.13 // q23.2 /// chr7:143452417-143454772 (-) // 99.75 // q35 /// chr7:143964009-143966364 (-) // 98.56 // q35 CTAGE family, member 15 /// CTAGE family, member 6 CTAGE15 /// CTAGE6 chr7q35 full length ENSG00000271079 /// ENSG00000271321 /// OTTHUMG00000153233 /// OTTHUMG00000157770 340307 /// 441294 Q86UF2 /// A4D2H0 --- --- NP_001008747 /// NP_848656 NM_001008747 /// NM_178561 --- 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation --- --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 7 transcripts. // true // Matching Probes // A UC011KTH.2(11),UC003WDK.4(11),OTTHUMT00000330280(11),OTTHUMT00000349580(11),GENSCAN00000022647(11),GENSCAN00000022654(11),ENST00000420911(11),ENST00000470691(11),NM_001008747(11),NM_178561(11) ENST00000420911 // havana:known chromosome:GRCh38:7:143571801:143574387:1 gene:ENSG00000271079 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000470691 // havana:known chromosome:GRCh38:7:143755089:143757696:-1 gene:ENSG00000271321 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000022647 // cdna:genscan chromosome:GRCh38:7:143755325:143757658:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000022654 // cdna:genscan chromosome:GRCh38:7:143571818:143574151:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001008747 // Homo sapiens CTAGE family, member 15 (CTAGE15), mRNA. // refseq // 11 // --- /// NM_178561 // Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA. // refseq // 11 // --- /// OTTHUMT00000330280 // otter:known chromosome:VEGA61:7:143571801:143574387:1 gene:OTTHUMG00000153233 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000349580 // otter:known chromosome:VEGA61:7:143755089:143757696:-1 gene:OTTHUMG00000157770 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc003wdk.4 // --- // ucsc_genes // 11 // --- /// uc011kth.2 // --- // ucsc_genes // 11 // --- uc011ece.2 // ucsc_genes // 2 // Cross Hyb Matching Probes /// uc010lpc.3 // ucsc_genes // 2 // Cross Hyb Matching Probes /// uc010lpe.3 // ucsc_genes // 2 // Cross Hyb Matching Probes /// OTTHUMT00000349970 // vega // 2 // Cross Hyb Matching Probes /// OTTHUMT00000349996 // vega // 2 // Cross Hyb Matching Probes /// OTTHUMT00000109220 // vega // 2 // Cross Hyb Matching Probes /// GENSCAN00000002119 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000022646 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000022653 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000314099 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000486333 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000487179 // ensembl // 2 // Cross Hyb Matching Probes /// NM_001278507 // refseq // 2 // Cross Hyb Matching Probes /// NM_001145659 // refseq // 2 // Cross Hyb Matching Probes /// NM_198495 // refseq // 2 // Cross Hyb Matching Probes /// AF338232 // gb // 2 // Cross Hyb Matching Probes /// AK292236 // gb // 2 // Cross Hyb Matching Probes /// BC146818 // gb // 8 // Cross Hyb Matching Probes /// XM_011549130 // refseq // 2 // Cross Hyb Matching Probes
11715107_s_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g56090587 g56090587 /TID=g56090587 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g56090587 /REP_ORG=Homo sapiens 56090587 g56090587 --- Hs.533543 /// Hs.731793 February 2009 (Genome Reference Consortium GRCh37) chrX:154611763-154612879 (+) // 93.1 // q28 /// chrX:154114649-154115765 (+) // 93.1 // q28 /// chrX:154687145-154688261 (-) // 93.1 // q28 coagulation factor VIII-associated 1 /// coagulation factor VIII-associated 2 /// coagulation factor VIII-associated 3 F8A1 /// F8A2 /// F8A3 chrXq28 full length ENSG00000274791 /// ENSG00000277150 /// ENSG00000277203 /// OTTHUMG00000013500 /// OTTHUMG00000034289 /// OTTHUMG00000034293 8263 /// 474383 /// 474384 P23610 --- 305423 NP_001007524 /// NP_001007525 /// NP_036283 NM_001007523 /// NM_001007524 /// NM_012151 --- 0005634 // nucleus // inferred from direct assay --- Blood_Clotting_Cascade // GenMAPP --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 18 transcripts. // true // Matching Probes // A UC004FMV.3(11),UC004FNI.3(11),UC004FNJ.3(11),OTTHUMT00000037637(11),OTTHUMT00000082837(11),OTTHUMT00000082833(11),GENSCAN00000014316(11),GENSCAN00000018127(11),GENSCAN00000018133(11),ENST00000610495(11),ENST00000369505(11),ENST00000622749(11),NM_012151(11),NM_001007523(11),NM_001007524(11),BC039693(11),BC071963(11) BC039693 // Homo sapiens coagulation factor VIII-associated (intronic transcript) 1, mRNA (cDNA clone MGC:44976 IMAGE:5214628), complete cds. // gb // 11 // --- /// BC071963 // Homo sapiens coagulation factor VIII-associated (intronic transcript) 1, mRNA (cDNA clone MGC:88655 IMAGE:5477018), complete cds. // gb // 11 // --- /// ENST00000369505 // ensembl_havana_transcript:known chromosome:GRCh38:X:155382115:155383230:1 gene:ENSG00000274791 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000610495 // ensembl_havana_transcript:known chromosome:GRCh38:X:154886349:154888061:1 gene:ENSG00000277203 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000622749 // ensembl_havana_transcript:known chromosome:GRCh38:X:155456914:155458672:-1 gene:ENSG00000277150 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000014316 // cdna:genscan chromosome:GRCh38:X:154886375:154887490:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000018127 // cdna:genscan chromosome:GRCh38:X:155457485:155458600:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000018133 // cdna:genscan chromosome:GRCh38:X:155382115:155383230:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001007523 // Homo sapiens coagulation factor VIII-associated 2 (F8A2), mRNA. // refseq // 11 // --- /// NM_001007524 // Homo sapiens coagulation factor VIII-associated 3 (F8A3), mRNA. // refseq // 11 // --- /// NM_012151 // Homo sapiens coagulation factor VIII-associated 1 (F8A1), mRNA. // refseq // 11 // --- /// OTTHUMT00000037637 // otter:known chromosome:VEGA61:X:154886349:154888061:1 gene:OTTHUMG00000013500 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000082833 // otter: chromosome:VEGA61:X:155456914:155458672:-1 gene:OTTHUMG00000034289 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000082837 // otter: chromosome:VEGA61:X:155382115:155383230:1 gene:OTTHUMG00000034293 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc004fmv.3 // --- // ucsc_genes // 11 // --- /// uc004fni.3 // --- // ucsc_genes // 11 // --- /// uc004fnj.3 // --- // ucsc_genes // 11 // --- ---
11715108_x_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g148236060 g148236060 /TID=g148236060 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g148236060 /REP_ORG=Homo sapiens 148236060 g148236060 --- Hs.722466 February 2009 (Genome Reference Consortium GRCh37) chr4:178649906-178911669 (+) // 49.63 // q34.3 long intergenic non-protein coding RNA 1098 LINC01098 chr4q34.3 --- ENSG00000231171 285501 --- --- --- --- NM_001085490 /// NR_028342 --- --- --- --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 3 transcripts. // false // Matching Probes // A BC033326(10),ENST00000507870(9),NR_028342(9) BC033326 // Homo sapiens cDNA clone IMAGE:4828874. // gb // 10 // --- /// ENST00000507870 // havana:known chromosome:GRCh38:4:177728757:177990750:1 gene:ENSG00000231171 gene_biotype:lincRNA transcript_biotype:lincRNA // ensembl // 9 // --- /// NR_028342 // Homo sapiens long intergenic non-protein coding RNA 1098 (LINC01098), long non-coding RNA. // refseq // 9 // --- /// uc010iru.2 // accn=NULL class=lncRNA name= ref=UCSCGeneNoncode transcriptId=uc010iru.2 cpcScore=3.4451700 cnci=-0.2088767 // noncode // 9 // --- /// uc010iru.3 // --- // ucsc_genes // 9 // --- TCONS_00008349-XLOC_003796 // broad-lincrna // 3 // Cross Hyb Matching Probes /// TCONS_00008944-XLOC_003797 // broad-lincrna // 1 // Cross Hyb Matching Probes /// TCONS_00008351-XLOC_003797 // broad-lincrna // 1 // Cross Hyb Matching Probes /// TCONS_00008350-XLOC_003797 // broad-lincrna // 1 // Cross Hyb Matching Probes /// NONHSAT099395 // noncode // 3 // Cross Hyb Matching Probes /// NONHSAT099396 // noncode // 1 // Cross Hyb Matching Probes /// NONHSAT099397 // noncode // 1 // Cross Hyb Matching Probes /// TCONS_00008349 // noncode // 3 // Cross Hyb Matching Probes /// TCONS_00008350 // noncode // 1 // Cross Hyb Matching Probes /// TCONS_00008351 // noncode // 1 // Cross Hyb Matching Probes /// TCONS_00008944 // noncode // 1 // Cross Hyb Matching Probes
11715109_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g141802512 g141802512 /TID=g141802512 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g141802512 /REP_ORG=Homo sapiens 141802512 g141802512 --- Hs.439922 February 2009 (Genome Reference Consortium GRCh37) chr3:169629481-169656946 (+) // 83.11 // q26.2 sterile alpha motif domain containing 7 SAMD7 chr3q26.2 full length ENSG00000187033 /// OTTHUMG00000158730 344658 Q7Z3H4 --- --- NP_001291295 /// NP_872416 /// XP_011511054 NM_001304366 /// NM_182610 /// NR_130713 /// XM_011512752 --- --- 0005515 // protein binding // inferred from electronic annotation --- IPR001660 // Sterile alpha motif domain // 3.2E-13 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 12 transcripts. // false // Matching Probes // A BX537903(11),ENST00000335556(11),ENST00000428432(11),NM_001304366(11),NM_182610(11),NR_130713(11),OTTHUMT00000351959(11),OTTHUMT00000351960(11),uc003fgd.3,uc003fge.3,uc011bpo.2,XM_011512752(11) BX537903 // Homo sapiens mRNA; cDNA DKFZp686E1583 (from clone DKFZp686E1583); complete cds. // gb // 11 // --- /// ENST00000335556 // ensembl_havana_transcript:known chromosome:GRCh38:3:169911572:169939175:1 gene:ENSG00000187033 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000428432 // havana:known chromosome:GRCh38:3:169911572:169939175:1 gene:ENSG00000187033 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001304366 // Homo sapiens sterile alpha motif domain containing 7 (SAMD7), transcript variant 1, mRNA. // refseq // 11 // --- /// NM_182610 // Homo sapiens sterile alpha motif domain containing 7 (SAMD7), transcript variant 2, mRNA. // refseq // 11 // --- /// NR_130713 // Homo sapiens sterile alpha motif domain containing 7 (SAMD7), transcript variant 3, non-coding RNA. // refseq // 11 // --- /// OTTHUMT00000351959 // otter:known chromosome:VEGA61:3:169911572:169939175:1 gene:OTTHUMG00000158730 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000351960 // otter:known chromosome:VEGA61:3:169911572:169939175:1 gene:OTTHUMG00000158730 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc003fgd.3 // --- // ucsc_genes // 11 // --- /// uc003fge.3 // --- // ucsc_genes // 11 // --- /// uc011bpo.2 // --- // ucsc_genes // 11 // --- /// XM_011512752 // PREDICTED: Homo sapiens sterile alpha motif domain containing 7 (SAMD7), transcript variant X1, mRNA. // refseq // 11 // --- ---
11715110_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g122937477 g122937477 /TID=g122937477 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g122937477 /REP_ORG=Homo sapiens 122937477 g122937477 --- Hs.574574 February 2009 (Genome Reference Consortium GRCh37) chr19:4890448-4902879 (-) // 80.46 // p13.3 arrestin domain containing 5 ARRDC5 chr19p13.3 full length ENSG00000205784 /// OTTHUMG00000180250 645432 A6NEK1 --- --- NP_001073992 /// XP_005259673 /// XP_011526481 /// XP_011526482 /// XP_011526483 /// XP_011526484 NM_001080523 /// XM_005259616 /// XM_011528179 /// XM_011528180 /// XM_011528181 /// XM_011528182 --- --- --- --- IPR011021 // Arrestin-like, N-terminal // 2.4E-23 /// IPR011021 // Arrestin-like, N-terminal // 9.7E-25 /// IPR011022 // Arrestin C-terminal-like domain // 8.1E-22 /// IPR011022 // Arrestin C-terminal-like domain // 2.2E-22 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 4 transcripts. // false // Matching Probes // A ENST00000381781(11),NM_001080523(11),OTTHUMT00000450443(11),uc002mbm.3 ENST00000381781 // ensembl_havana_transcript:known chromosome:GRCh38:19:4890437:4902867:-1 gene:ENSG00000205784 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001080523 // Homo sapiens arrestin domain containing 5 (ARRDC5), mRNA. // refseq // 11 // --- /// OTTHUMT00000450443 // otter:known chromosome:VEGA61:19:4890437:4902867:-1 gene:OTTHUMG00000180250 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc002mbm.3 // --- // ucsc_genes // 11 // --- ---
11715111_s_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g146229337 g146229337 /TID=g146229337 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g146229337 /REP_ORG=Homo sapiens 146229337 g146229337 --- Hs.172944 /// Hs.446683 /// Hs.567650 /// Hs.659014 /// Hs.681647 /// Hs.743279 /// Hs.745468 February 2009 (Genome Reference Consortium GRCh37) chr19:49547094-49548567 (+) // 97.35 // q13.33 /// chr19:49550895-49552368 (-) // 98.01 // q13.33 /// chr19:49526126-49527600 (-) // 97.12 // q13.33 /// chr19:49538826-49559004 (-) // 95.35 // q13.33 chorionic gonadotropin, beta polypeptide /// chorionic gonadotropin, beta polypeptide 1 /// chorionic gonadotropin, beta polypeptide 2 /// chorionic gonadotropin, beta polypeptide 5 /// chorionic gonadotropin, beta polypeptide 7 /// chorionic gonadotropin, beta polypeptide 8 CGB /// CGB1 /// CGB2 /// CGB5 /// CGB7 /// CGB8 chr19q13.32 full length ENSG00000104818 /// ENSG00000104827 /// ENSG00000189052 /// ENSG00000196337 /// ENSG00000213030 /// ENSG00000267631 /// OTTHUMG00000150185 /// OTTHUMG00000150186 /// OTTHUMG00000180605 /// OTTHUMG00000180609 /// OTTHUMG00000183337 /// OTTHUMG00000183339 1082 /// 93659 /// 94027 /// 94115 /// 114335 /// 114336 P01233 /// Q6NT52 /// A6NKQ9 /// A0A0F7RQP8 /// K7ELM3 /// M0R0E6 /// H9KV56 /// A0A0F7RQF0 --- 118860 /// 608823 /// 608824 /// 608825 /// 608826 /// 608827 NP_000728 /// NP_149032 /// NP_149133 /// NP_149439 /// NP_203695 /// NP_203696 /// XP_005258536 /// XP_005258537 /// XP_011525821 NM_000737 /// NM_033043 /// NM_033142 /// NM_033183 /// NM_033377 /// NM_033378 /// XM_005258479 /// XM_005258480 /// XM_011527519 0006915 // apoptotic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007292 // female gamete generation // traceable author statement /// 0016486 // peptide hormone processing // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from mutant phenotype Cell_cycle_KEGG // GenMAPP /// G1_to_S_cell_cycle_Reactome // GenMAPP IPR006208 // Glycoprotein hormone subunit beta, cystine knot // 1.6E-34 /// IPR006208 // Glycoprotein hormone subunit beta, cystine knot // 7.6E-35 /// IPR006208 // Glycoprotein hormone subunit beta, cystine knot // 1.5E-34 /// IPR006208 // Glycoprotein hormone subunit beta, cystine knot // 1.3E-34 /// IPR006208 // Glycoprotein hormone subunit beta, cystine knot // 1.4E-38 /// IPR006208 // Glycoprotein hormone subunit beta, cystine knot // 6.4E-39 /// IPR006208 // Glycoprotein hormone subunit beta, cystine knot // 1.3E-38 /// IPR006208 // Glycoprotein hormone subunit beta, cystine knot // 1.1E-38 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 54 transcripts. // true // Matching Probes // A UC002PLV.2(11),UC002PLW.3(11),UC010YAF.2(11),UC002PLX.3(11),UC002PLY.3(11),UC002PMB.4(11),UC002PMC.3(11),UC002PMD.3(11),UC002PME.3(11),NM_033043(11),OTTHUMT00000452164(11),OTTHUMT00000452165(11),OTTHUMT00000316744(11),OTTHUMT00000316745(11),OTTHUMT00000316746(11),OTTHUMT00000466248(11),OTTHUMT00000466251(11),OTTHUMT00000452168(11),OTTHUMT00000466253(11),OTTHUMT00000466254(11),GENSCAN00000028251(11),GENSCAN00000028257(11),GENSCAN00000028266(11),GENSCAN00000028268(11),GENSCAN00000028277(11),ENST00000591656(11),ENST00000301407(11),ENST00000601167(11),ENST00000474913(11),ENST00000359342(11),ENST00000357383(11),ENST00000301408(11),ENST00000448456(11),ENST00000596965(11),ENST00000597853(11),ENST00000377280(11),AK125108(11),AK291552(11),BC006290(11),BC022796(11),BC030994(11),BC041054(11),BC051378(11),BC069367(10),BC069526(11),BC103969(11),BC103970(11),BC103971(11),BC106059(11),BC106723(11),BC106724(11),BC107144(11),BC128603(11),BT006890(11),J00117(11),XM_005258479(11),XM_005258480(11),XM_011527519(11),NM_033377(11),NM_033378(11),NM_033183(11),NM_000737(11),NM_033142(11) AK125108 // Homo sapiens cDNA FLJ43118 fis, clone CTONG3002909, highly similar to CHORIOGONADOTROPIN BETA CHAIN PRECURSOR. // gb // 11 // --- /// AK291552 // Homo sapiens cDNA FLJ78519 complete cds. // gb // 11 // --- /// BC006290 // Homo sapiens chorionic gonadotropin, beta polypeptide 5, mRNA (cDNA clone MGC:10399 IMAGE:3960125), complete cds. // gb // 11 // --- /// BC022796 // Homo sapiens chorionic gonadotropin, beta polypeptide, mRNA (cDNA clone MGC:39080 IMAGE:4811294), complete cds. // gb // 11 // --- /// BC030994 // Homo sapiens chorionic gonadotropin, beta polypeptide 8, mRNA (cDNA clone MGC:32699 IMAGE:4605021), complete cds. // gb // 11 // --- /// BC041054 // Homo sapiens chorionic gonadotropin, beta polypeptide, mRNA (cDNA clone MGC:52151 IMAGE:5431911), complete cds. // gb // 11 // --- /// BC051378 // Homo sapiens chorionic gonadotropin, beta polypeptide 5, mRNA (cDNA clone MGC:59699 IMAGE:3956670), complete cds. // gb // 11 // --- /// BC069367 // Homo sapiens chorionic gonadotropin, beta polypeptide 2, mRNA (cDNA clone MGC:96947 IMAGE:7262156), complete cds. // gb // 10 // --- /// BC069526 // Homo sapiens chorionic gonadotropin, beta polypeptide, mRNA (cDNA clone MGC:96911 IMAGE:7262120), complete cds. // gb // 11 // --- /// BC103969 // Homo sapiens chorionic gonadotropin, beta polypeptide 8, mRNA (cDNA clone MGC:119854 IMAGE:40014676), complete cds. // gb // 11 // --- /// BC103970 // Homo sapiens chorionic gonadotropin, beta polypeptide 5, mRNA (cDNA clone MGC:119855 IMAGE:40014677), complete cds. // gb // 11 // --- /// BC103971 // Homo sapiens chorionic gonadotropin, beta polypeptide 5, mRNA (cDNA clone MGC:119856 IMAGE:40014679), complete cds. // gb // 11 // --- /// BC106059 // Homo sapiens chorionic gonadotropin, beta polypeptide, mRNA (cDNA clone MGC:117343 IMAGE:4992804), complete cds. // gb // 11 // --- /// BC106723 // Homo sapiens chorionic gonadotropin, beta polypeptide 5, mRNA (cDNA clone MGC:119822 IMAGE:40014469), complete cds. // gb // 11 // --- /// BC106724 // Homo sapiens chorionic gonadotropin, beta polypeptide 5, mRNA (cDNA clone MGC:119823 IMAGE:40014470), complete cds. // gb // 11 // --- /// BC107144 // Homo sapiens chorionic gonadotropin, beta polypeptide 1, mRNA (cDNA clone IMAGE:40030883). // gb // 11 // --- /// BC128603 // Homo sapiens chorionic gonadotropin, beta polypeptide, mRNA (cDNA clone MGC:158885 IMAGE:40002893), complete cds. // gb // 11 // --- /// BT006890 // Homo sapiens chorionic gonadotropin, beta polypeptide mRNA, complete cds. // gb // 11 // --- /// ENST00000301407 // ensembl_havana_transcript:known chromosome:GRCh38:19:49035610:49036816:-1 gene:ENSG00000267631 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000301408 // ensembl_havana_transcript:known chromosome:GRCh38:19:49043884:49045311:1 gene:ENSG00000189052 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000357383 // ensembl_havana_transcript:known chromosome:GRCh38:19:49022869:49024333:-1 gene:ENSG00000104827 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000359342 // ensembl_havana_transcript:known chromosome:GRCh38:19:49031978:49033238:1 gene:ENSG00000104818 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000377280 // ensembl:known chromosome:GRCh38:19:49054275:49055779:-1 gene:ENSG00000196337 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000448456 // ensembl_havana_transcript:known chromosome:GRCh38:19:49047638:49049106:-1 gene:ENSG00000213030 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000474913 // havana:known chromosome:GRCh38:19:49031912:49033154:1 gene:ENSG00000104818 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000591656 // havana:known chromosome:GRCh38:19:49022953:49036895:-1 gene:ENSG00000267335 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000596965 // havana:known chromosome:GRCh38:19:49054275:49057751:-1 gene:ENSG00000196337 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000597853 // havana:known chromosome:GRCh38:19:49054275:49058860:-1 gene:ENSG00000196337 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000601167 // havana:known chromosome:GRCh38:19:49035653:49036895:-1 gene:ENSG00000267631 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000028251 // cdna:genscan chromosome:GRCh38:19:49035610:49036366:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000028257 // cdna:genscan chromosome:GRCh38:19:49022886:49026096:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000028266 // cdna:genscan chromosome:GRCh38:19:49032441:49033221:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000028268 // cdna:genscan chromosome:GRCh38:19:49047655:49058767:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000028277 // cdna:genscan chromosome:GRCh38:19:49044210:49045294:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// J00117 // Human chorionic gonadotropin (hcg) beta subunit mRNA, complete cds. // gb // 11 // --- /// NM_000737 // Homo sapiens chorionic gonadotropin, beta polypeptide (CGB), mRNA. // refseq // 11 // --- /// NM_033043 // Homo sapiens chorionic gonadotropin, beta polypeptide 5 (CGB5), mRNA. // refseq // 11 // --- /// NM_033142 // Homo sapiens chorionic gonadotropin, beta polypeptide 7 (CGB7), mRNA. // refseq // 11 // --- /// NM_033183 // Homo sapiens chorionic gonadotropin, beta polypeptide 8 (CGB8), mRNA. // refseq // 11 // --- /// NM_033377 // Homo sapiens chorionic gonadotropin, beta polypeptide 1 (CGB1), mRNA. // refseq // 11 // --- /// NM_033378 // Homo sapiens chorionic gonadotropin, beta polypeptide 2 (CGB2), mRNA. // refseq // 11 // --- /// OTTHUMT00000316744 // otter:putative chromosome:VEGA61:19:49031912:49033154:1 gene:OTTHUMG00000150185 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000316745 // otter:known chromosome:VEGA61:19:49031978:49033238:1 gene:OTTHUMG00000150185 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000316746 // otter:known chromosome:VEGA61:19:49035610:49036816:-1 gene:OTTHUMG00000150186 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000452164 // otter:known chromosome:VEGA61:19:49022869:49024333:-1 gene:OTTHUMG00000180605 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000452165 // otter:putative chromosome:VEGA61:19:49022953:49036895:-1 gene:OTTHUMG00000180606 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000452168 // otter:known chromosome:VEGA61:19:49047638:49049106:-1 gene:OTTHUMG00000180609 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000466248 // otter:putative chromosome:VEGA61:19:49035653:49036895:-1 gene:OTTHUMG00000150186 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000466251 // otter:known chromosome:VEGA61:19:49043884:49045311:1 gene:OTTHUMG00000183337 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000466253 // otter:known chromosome:VEGA61:19:49054275:49057751:-1 gene:OTTHUMG00000183339 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000466254 // otter:known chromosome:VEGA61:19:49054275:49058860:-1 gene:OTTHUMG00000183339 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc002plv.2 // --- // ucsc_genes // 11 // --- /// uc002plw.3 // --- // ucsc_genes // 11 // --- /// uc002plx.3 // --- // ucsc_genes // 11 // --- /// uc002ply.3 // --- // ucsc_genes // 11 // --- /// uc002pmb.4 // --- // ucsc_genes // 11 // --- /// uc002pmc.3 // --- // ucsc_genes // 11 // --- /// uc002pmd.3 // --- // ucsc_genes // 11 // --- /// uc002pme.3 // --- // ucsc_genes // 11 // --- /// uc010yaf.2 // --- // ucsc_genes // 11 // --- /// XM_005258479 // PREDICTED: Homo sapiens chorionic gonadotropin, beta polypeptide 2 (CGB2), transcript variant X1, mRNA. // refseq // 11 // --- /// XM_005258480 // PREDICTED: Homo sapiens chorionic gonadotropin, beta polypeptide 2 (CGB2), transcript variant X2, mRNA. // refseq // 11 // --- /// XM_011527519 // PREDICTED: Homo sapiens chorionic gonadotropin, beta polypeptide 7 (CGB7), transcript variant X1, mRNA. // refseq // 11 // --- ---
11715112_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g83921608 g83921608 /TID=g83921608 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g83921608 /REP_ORG=Homo sapiens 83921608 g83921608 --- Hs.531182 February 2009 (Genome Reference Consortium GRCh37) chr1:75033795-75139422 (-) // 93.68 // p31.1 glutamate rich 3 ERICH3 chr1p31.1 full length ENSG00000178965 /// OTTHUMG00000009622 127254 Q5RHP9 --- --- NP_001002912 /// XP_005270507 /// XP_006710412 /// XP_006710413 /// XP_006710414 /// XP_011538951 /// XP_011538952 /// XP_011538953 /// XP_011538954 /// XP_011538955 /// XP_011538956 /// XP_011538957 /// XP_011538958 /// XP_011538959 NM_001002912 /// XM_005270450 /// XM_006710349 /// XM_006710350 /// XM_006710351 /// XM_011540649 /// XM_011540650 /// XM_011540651 /// XM_011540652 /// XM_011540653 /// XM_011540654 /// XM_011540655 /// XM_011540656 /// XM_011540657 --- --- --- --- IPR027962 // Protein of unknown function DUF4590 // 1.5E-58 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 18 transcripts. // false // Matching Probes // A ENST00000326665(11),ENST00000433746(11),NM_001002912(11),OTTHUMT00000026516(11),OTTHUMT00000402121(11),XM_005270450(11),XM_006710349(11),XM_006710350(11),XM_006710351(11),XM_011540649(11),XM_011540650(11),XM_011540651(11),XM_011540652(11),XM_011540653(11),XM_011540654(11),XM_011540655(11),XM_011540656(11),XM_011540657(11) ENST00000326665 // ensembl_havana_transcript:known chromosome:GRCh38:1:74568111:74673738:-1 gene:ENSG00000178965 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000433746 // ensembl_havana_transcript:known chromosome:GRCh38:1:74568117:74579763:-1 gene:ENSG00000178965 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// NM_001002912 // Homo sapiens glutamate-rich 3 (ERICH3), mRNA. // refseq // 11 // --- /// OTTHUMT00000026516 // otter:known chromosome:VEGA61:1:74568111:74673738:-1 gene:OTTHUMG00000009622 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// OTTHUMT00000402121 // otter: chromosome:VEGA61:1:74568117:74579763:-1 gene:OTTHUMG00000009622 gene_biotype:protein_coding transcript_biotype:processed_transcript // vega // 11 // --- /// uc001dgg.3 // --- // ucsc_genes // 11 // --- /// XM_005270450 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X13, mRNA. // refseq // 11 // --- /// XM_006710349 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X2, mRNA. // refseq // 11 // --- /// XM_006710350 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X4, mRNA. // refseq // 11 // --- /// XM_006710351 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X5, mRNA. // refseq // 11 // --- /// XM_011540649 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X1, mRNA. // refseq // 11 // --- /// XM_011540650 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X3, mRNA. // refseq // 11 // --- /// XM_011540651 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X6, mRNA. // refseq // 11 // --- /// XM_011540652 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X7, mRNA. // refseq // 11 // --- /// XM_011540653 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X8, mRNA. // refseq // 11 // --- /// XM_011540654 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X9, mRNA. // refseq // 11 // --- /// XM_011540655 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X10, mRNA. // refseq // 11 // --- /// XM_011540656 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X11, mRNA. // refseq // 11 // --- /// XM_011540657 // PREDICTED: Homo sapiens glutamate-rich 3 (ERICH3), transcript variant X12, mRNA. // refseq // 11 // --- ---
11715113_x_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g153251793 g153251793 /TID=g153251793 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g153251793 /REP_ORG=Homo sapiens 153251793 g153251793 --- Hs.567527 February 2009 (Genome Reference Consortium GRCh37) chr11:71498556-71512280 (+) // 95.31 // q13.4 family with sequence similarity 86, member C1 FAM86C1 chr11q13.4 full length ENSG00000158483 /// OTTHUMG00000160552 55199 Q9NVL1 /// B4DDJ9 /// B2RD94 --- 616124 NP_001093123 /// NP_060642 /// NP_689776 NM_001099653 /// NM_018172 /// NM_152563 0032259 // methylation // inferred from electronic annotation --- 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation --- IPR029426 // FAM86 // 1.2E-30 /// IPR029426 // FAM86 // 1.2E-30 /// IPR029426 // FAM86 // 1.6E-27 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 14 transcripts. // false // Matching Probes // A AK130709(10),BC032519(11),ENST00000346333(10),ENST00000359244(10),NM_001099653(11),NM_018172(11),NM_152563(11),OTTHUMT00000361119(10),OTTHUMT00000361120(10),uc001oqv.4,uc001oqw.4,uc009ysr.3,uc009yss.3,uc010rqq.2 AK130709 // accn=AK130709 class=mRNAlike lncRNA name=Human lncRNA ref=JounralRNA transcriptId=5278 cpcScore=1.7061000 cnci=-0.1221078 // noncode // 10 // --- /// BC032519 // Homo sapiens family with sequence similarity 86, member C, mRNA (cDNA clone MGC:45068 IMAGE:5494088), complete cds. // gb // 11 // --- /// ENST00000346333 // ensembl_havana_transcript:known chromosome:GRCh38:11:71787510:71801234:1 gene:ENSG00000158483 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000359244 // ensembl_havana_transcript:known chromosome:GRCh38:11:71787514:71801236:1 gene:ENSG00000158483 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// NM_001099653 // Homo sapiens family with sequence similarity 86, member C1 (FAM86C1), transcript variant 3, mRNA. // refseq // 11 // --- /// NM_018172 // Homo sapiens family with sequence similarity 86, member C1 (FAM86C1), transcript variant 1, mRNA. // refseq // 11 // --- /// NM_152563 // Homo sapiens family with sequence similarity 86, member C1 (FAM86C1), transcript variant 2, mRNA. // refseq // 11 // --- /// OTTHUMT00000361119 // otter:known chromosome:VEGA61:11:71787510:71801234:1 gene:OTTHUMG00000160552 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 10 // --- /// OTTHUMT00000361120 // otter:known chromosome:VEGA61:11:71787514:71801236:1 gene:OTTHUMG00000160552 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 10 // --- /// uc001oqv.4 // --- // ucsc_genes // 11 // --- /// uc001oqw.4 // --- // ucsc_genes // 11 // --- /// uc009ysr.3 // --- // ucsc_genes // 11 // --- /// uc009yss.3 // --- // ucsc_genes // 10 // --- /// uc010rqq.2 // --- // ucsc_genes // 10 // --- TCONS_l2_00006097-XLOC_l2_003285 // broad-tucp // 8 // Cross Hyb Matching Probes /// TCONS_l2_00006096-XLOC_l2_003285 // broad-tucp // 8 // Cross Hyb Matching Probes /// TCONS_l2_00006623-XLOC_l2_003285 // broad-tucp // 8 // Cross Hyb Matching Probes /// uc010sgk.2 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc003dps.4 // ucsc_genes // 6 // Cross Hyb Matching Probes /// uc003dpp.4 // ucsc_genes // 6 // Cross Hyb Matching Probes /// uc003dpq.4 // ucsc_genes // 6 // Cross Hyb Matching Probes /// uc003dpr.4 // ucsc_genes // 6 // Cross Hyb Matching Probes /// uc003wvf.4 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc010lsd.3 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc003wvh.4 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc003wvi.4 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc010lse.3 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc010lsf.3 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc010lsg.3 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc003wvl.4 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc011kxq.2 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc011kxs.1 // ucsc_genes // 6 // Cross Hyb Matching Probes /// NONHSAT026306 // noncode // 8 // Cross Hyb Matching Probes /// NONHSAT090523 // noncode // 6 // Cross Hyb Matching Probes /// NONHSAT090524 // noncode // 6 // Cross Hyb Matching Probes /// NONHSAT090525 // noncode // 6 // Cross Hyb Matching Probes /// NONHSAT125144 // noncode // 6 // Cross Hyb Matching Probes /// uc010sgk.1 // noncode // 8 // Cross Hyb Matching Probes /// uc011kxs.1 // noncode // 6 // Cross Hyb Matching Probes /// NR_003494 // noncode // 8 // Cross Hyb Matching Probes /// NR_024241 // noncode // 6 // Cross Hyb Matching Probes /// OTTHUMT00000383309 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383310 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383311 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383312 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383313 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383314 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383315 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383316 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000352426 // vega // 6 // Cross Hyb Matching Probes /// OTTHUMT00000352427 // vega // 6 // Cross Hyb Matching Probes /// OTTHUMT00000352425 // vega // 6 // Cross Hyb Matching Probes /// GENSCAN00000042236 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000529146 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000340537 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000431227 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000534187 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000497543 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000484945 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000459803 // ensembl // 6 // Cross Hyb Matching Probes /// AK026807 // gb // 6 // Cross Hyb Matching Probes /// BC062615 // gb // 8 // Cross Hyb Matching Probes /// BC068011 // gb // 6 // Cross Hyb Matching Probes /// BC085016 // gb // 8 // Cross Hyb Matching Probes /// BC098427 // gb // 5 // Cross Hyb Matching Probes /// XM_006716255 // refseq // 8 // Cross Hyb Matching Probes /// XR_428289 // refseq // 8 // Cross Hyb Matching Probes /// XR_948902 // refseq // 8 // Cross Hyb Matching Probes /// XM_011543841 // refseq // 8 // Cross Hyb Matching Probes /// XM_006716256 // refseq // 8 // Cross Hyb Matching Probes /// XM_006716257 // refseq // 8 // Cross Hyb Matching Probes /// XM_011543842 // refseq // 8 // Cross Hyb Matching Probes /// XM_006716260 // refseq // 8 // Cross Hyb Matching Probes /// XM_011543843 // refseq // 8 // Cross Hyb Matching Probes /// XM_011543844 // refseq // 8 // Cross Hyb Matching Probes /// XM_006716262 // refseq // 8 // Cross Hyb Matching Probes /// NM_001083537 // refseq // 8 // Cross Hyb Matching Probes /// NR_003494 // refseq // 8 // Cross Hyb Matching Probes /// NR_024241 // refseq // 6 // Cross Hyb Matching Probes /// NR_024254 // refseq // 8 // Cross Hyb Matching Probes
11715114_x_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g153251810 g153251810 /TID=g153251810 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g153251810 /REP_ORG=Homo sapiens 153251810 g153251810 --- Hs.567527 February 2009 (Genome Reference Consortium GRCh37) chr11:71498556-71512280 (+) // 95.49 // q13.4 family with sequence similarity 86, member C1 FAM86C1 chr11q13.4 full length ENSG00000158483 /// OTTHUMG00000160552 55199 Q9NVL1 /// B4DDJ9 /// B2RD94 --- 616124 NP_001093123 /// NP_060642 /// NP_689776 NM_001099653 /// NM_018172 /// NM_152563 0032259 // methylation // inferred from electronic annotation --- 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation --- IPR029426 // FAM86 // 1.2E-30 /// IPR029426 // FAM86 // 1.2E-30 /// IPR029426 // FAM86 // 1.6E-27 This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 14 transcripts. // false // Matching Probes // A AK130709(10),BC032519(11),ENST00000346333(10),ENST00000359244(10),NM_001099653(11),NM_018172(11),NM_152563(11),OTTHUMT00000361119(10),OTTHUMT00000361120(10),uc001oqv.4,uc001oqw.4,uc009ysr.3,uc009yss.3,uc010rqq.2 AK130709 // accn=AK130709 class=mRNAlike lncRNA name=Human lncRNA ref=JounralRNA transcriptId=5278 cpcScore=1.7061000 cnci=-0.1221078 // noncode // 10 // --- /// BC032519 // Homo sapiens family with sequence similarity 86, member C, mRNA (cDNA clone MGC:45068 IMAGE:5494088), complete cds. // gb // 11 // --- /// ENST00000346333 // ensembl_havana_transcript:known chromosome:GRCh38:11:71787510:71801234:1 gene:ENSG00000158483 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000359244 // ensembl_havana_transcript:known chromosome:GRCh38:11:71787514:71801236:1 gene:ENSG00000158483 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// NM_001099653 // Homo sapiens family with sequence similarity 86, member C1 (FAM86C1), transcript variant 3, mRNA. // refseq // 11 // --- /// NM_018172 // Homo sapiens family with sequence similarity 86, member C1 (FAM86C1), transcript variant 1, mRNA. // refseq // 11 // --- /// NM_152563 // Homo sapiens family with sequence similarity 86, member C1 (FAM86C1), transcript variant 2, mRNA. // refseq // 11 // --- /// OTTHUMT00000361119 // otter:known chromosome:VEGA61:11:71787510:71801234:1 gene:OTTHUMG00000160552 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 10 // --- /// OTTHUMT00000361120 // otter:known chromosome:VEGA61:11:71787514:71801236:1 gene:OTTHUMG00000160552 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 10 // --- /// uc001oqv.4 // --- // ucsc_genes // 11 // --- /// uc001oqw.4 // --- // ucsc_genes // 11 // --- /// uc009ysr.3 // --- // ucsc_genes // 11 // --- /// uc009yss.3 // --- // ucsc_genes // 10 // --- /// uc010rqq.2 // --- // ucsc_genes // 10 // --- TCONS_l2_00006097-XLOC_l2_003285 // broad-tucp // 8 // Cross Hyb Matching Probes /// TCONS_l2_00006096-XLOC_l2_003285 // broad-tucp // 8 // Cross Hyb Matching Probes /// TCONS_l2_00006623-XLOC_l2_003285 // broad-tucp // 8 // Cross Hyb Matching Probes /// uc010sgk.2 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc003dps.4 // ucsc_genes // 6 // Cross Hyb Matching Probes /// uc003dpp.4 // ucsc_genes // 6 // Cross Hyb Matching Probes /// uc003dpq.4 // ucsc_genes // 6 // Cross Hyb Matching Probes /// uc003dpr.4 // ucsc_genes // 6 // Cross Hyb Matching Probes /// uc003wvf.4 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc010lsd.3 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc003wvh.4 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc003wvi.4 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc010lse.3 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc010lsf.3 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc010lsg.3 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc003wvl.4 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc011kxq.2 // ucsc_genes // 8 // Cross Hyb Matching Probes /// uc011kxs.1 // ucsc_genes // 6 // Cross Hyb Matching Probes /// NONHSAT026306 // noncode // 8 // Cross Hyb Matching Probes /// NONHSAT090523 // noncode // 6 // Cross Hyb Matching Probes /// NONHSAT090524 // noncode // 6 // Cross Hyb Matching Probes /// NONHSAT090525 // noncode // 6 // Cross Hyb Matching Probes /// NONHSAT125144 // noncode // 6 // Cross Hyb Matching Probes /// uc010sgk.1 // noncode // 8 // Cross Hyb Matching Probes /// uc011kxs.1 // noncode // 6 // Cross Hyb Matching Probes /// NR_003494 // noncode // 8 // Cross Hyb Matching Probes /// NR_024241 // noncode // 6 // Cross Hyb Matching Probes /// OTTHUMT00000383309 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383310 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383311 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383312 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383313 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383314 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383315 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000383316 // vega // 8 // Cross Hyb Matching Probes /// OTTHUMT00000352426 // vega // 6 // Cross Hyb Matching Probes /// OTTHUMT00000352427 // vega // 6 // Cross Hyb Matching Probes /// OTTHUMT00000352425 // vega // 6 // Cross Hyb Matching Probes /// GENSCAN00000042236 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000529146 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000340537 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000431227 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000534187 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000497543 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000484945 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000459803 // ensembl // 6 // Cross Hyb Matching Probes /// AK026807 // gb // 6 // Cross Hyb Matching Probes /// BC062615 // gb // 8 // Cross Hyb Matching Probes /// BC068011 // gb // 6 // Cross Hyb Matching Probes /// BC085016 // gb // 8 // Cross Hyb Matching Probes /// BC098427 // gb // 5 // Cross Hyb Matching Probes /// XM_006716255 // refseq // 8 // Cross Hyb Matching Probes /// XR_428289 // refseq // 8 // Cross Hyb Matching Probes /// XR_948902 // refseq // 8 // Cross Hyb Matching Probes /// XM_011543841 // refseq // 8 // Cross Hyb Matching Probes /// XM_006716256 // refseq // 8 // Cross Hyb Matching Probes /// XM_006716257 // refseq // 8 // Cross Hyb Matching Probes /// XM_011543842 // refseq // 8 // Cross Hyb Matching Probes /// XM_006716260 // refseq // 8 // Cross Hyb Matching Probes /// XM_011543843 // refseq // 8 // Cross Hyb Matching Probes /// XM_011543844 // refseq // 8 // Cross Hyb Matching Probes /// XM_006716262 // refseq // 8 // Cross Hyb Matching Probes /// NM_001083537 // refseq // 8 // Cross Hyb Matching Probes /// NR_003494 // refseq // 8 // Cross Hyb Matching Probes /// NR_024241 // refseq // 6 // Cross Hyb Matching Probes /// NR_024254 // refseq // 8 // Cross Hyb Matching Probes
11715115_s_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g21166387 g21166387 /TID=g21166387 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g21166387 /REP_ORG=Homo sapiens 21166387 g21166387 --- Hs.553506 February 2009 (Genome Reference Consortium GRCh37) chr6:26273203-26273640 (+) // 100.0 // p22.2 histone cluster 1, H2bi HIST1H2BI chr6p22.2 full length --- 8346 P62807 /// B2R4S9 --- 602807 NP_003516 NM_003525 0002227 // innate immune response in mucosa // inferred from direct assay /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // not recorded /// 0006334 // nucleosome assembly // non-traceable author statement /// 0019731 // antibacterial humoral response // inferred from direct assay /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // inferred from direct assay 0000786 // nucleosome // non-traceable author statement /// 0000788 // nuclear nucleosome // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular exosome // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 2 transcripts. // false // Matching Probes // A NM_003525(11),uc003nhk.3 NM_003525 // Homo sapiens histone cluster 1, H2bi (HIST1H2BI), mRNA. // refseq // 11 // --- /// uc003nhk.3 // --- // ucsc_genes // 11 // --- BC101653 // gb // 4 // Cross Hyb Matching Probes /// BC101655 // gb // 4 // Cross Hyb Matching Probes
11715116_s_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g21264600 g21264600 /TID=g21264600 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g21264600 /REP_ORG=Homo sapiens 21264600 g21264600 --- Hs.662174 February 2009 (Genome Reference Consortium GRCh37) chr6:26204872-26205249 (+) // 100.0 // p22.2 histone cluster 1, H4e HIST1H4E chr6p22.2 full length --- 8367 P62805 /// B2R4R0 --- 602830 NP_003536 NM_003545 0000183 // chromatin silencing at rDNA // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0000724 // double-strand break repair via homologous recombination // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006303 // double-strand break repair via nonhomologous end joining // traceable author statement /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006334 // nucleosome assembly // traceable author statement /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031047 // gene silencing by RNA // traceable author statement /// 0032776 // DNA methylation on cytosine // traceable author statement /// 0034080 // CENP-A containing nucleosome assembly // traceable author statement /// 0035574 // histone H4-K20 demethylation // traceable author statement /// 0040029 // regulation of gene expression, epigenetic // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045653 // negative regulation of megakaryocyte differentiation // inferred from direct assay /// 0045814 // negative regulation of gene expression, epigenetic // traceable author statement /// 0051290 // protein heterotetramerization // inferred from direct assay 0000228 // nuclear chromosome // inferred from direct assay /// 0000784 // nuclear chromosome, telomeric region // inferred from direct assay /// 0000786 // nucleosome // inferred from direct assay /// 0000786 // nucleosome // traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular exosome // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0035575 // histone demethylase activity (H4-K20 specific) // traceable author statement /// 0042393 // histone binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 2 transcripts. // false // Matching Probes // A NM_003545(11),uc003ngy.3 NM_003545 // Homo sapiens histone cluster 1, H4e (HIST1H4E), mRNA. // refseq // 11 // --- /// uc003ngy.3 // --- // ucsc_genes // 11 // --- CR542189 // noncode // 6 // Cross Hyb Matching Probes /// OTTHUMT00000040104 // vega // 6 // Cross Hyb Matching Probes /// GENSCAN00000029812 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000615164 // ensembl // 6 // Cross Hyb Matching Probes /// CR542180 // gb // 6 // Cross Hyb Matching Probes /// CR542189 // gb // 6 // Cross Hyb Matching Probes
11715117_x_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g15718715 g15718715 /TID=g15718715 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g15718715 /REP_ORG=Homo sapiens 15718715 g15718715 --- Hs.406691 February 2009 (Genome Reference Consortium GRCh37) chr6:27782079-27782518 (-) // 100.0 // p22.1 histone cluster 1, H2aj HIST1H2AJ chr6p22.1 full length --- 8331 Q99878 --- 602791 NP_066544 NM_021066 0006325 // chromatin organization // --- /// 0006342 // chromatin silencing // --- 0000786 // nucleosome // inferred from electronic annotation /// 0000790 // nuclear chromatin // --- /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0070062 // extracellular exosome // inferred from direct assay 0003677 // DNA binding // --- /// 0003677 // DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 2 transcripts. // false // Matching Probes // A NM_021066(11),uc003njn.1 NM_021066 // Homo sapiens histone cluster 1, H2aj (HIST1H2AJ), mRNA. // refseq // 11 // --- /// uc003njn.1 // --- // ucsc_genes // 11 // --- NM_003509 // refseq // 1 // Cross Hyb Matching Probes /// OTTHUMT00000040152 // vega // 1 // Cross Hyb Matching Probes /// OTTHUMT00000040154 // vega // 1 // Cross Hyb Matching Probes /// GENSCAN00000048855 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000048860 // ensembl // 1 // Cross Hyb Matching Probes /// ENST00000358739 // ensembl // 1 // Cross Hyb Matching Probes /// ENST00000333151 // ensembl // 1 // Cross Hyb Matching Probes /// BC112254 // gb // 1 // Cross Hyb Matching Probes /// BC112256 // gb // 1 // Cross Hyb Matching Probes /// BC133048 // gb // 5 // Cross Hyb Matching Probes /// BC133050 // gb // 5 // Cross Hyb Matching Probes
11715118_s_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g21396482 g21396482 /TID=g21396482 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g21396482 /REP_ORG=Homo sapiens 21396482 g21396482 --- Hs.182137 February 2009 (Genome Reference Consortium GRCh37) chr6:26199786-26200216 (+) // 100.0 // p22.2 histone cluster 1, H2bf HIST1H2BF chr6p22.2 full length --- 8343 P62807 /// B2R4S9 --- 602804 NP_003513 NM_003522 0002227 // innate immune response in mucosa // inferred from direct assay /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // not recorded /// 0006334 // nucleosome assembly // non-traceable author statement /// 0019731 // antibacterial humoral response // inferred from direct assay /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // inferred from direct assay 0000786 // nucleosome // non-traceable author statement /// 0000788 // nuclear nucleosome // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular exosome // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 5 transcripts. // false // Matching Probes // A BC056264(11),BC096120(11),BC096123(11),NM_003522(11),uc003ngx.3 BC056264 // Homo sapiens histone 1, H2bg, mRNA (cDNA clone IMAGE:6668499), partial cds. // gb // 11 // --- /// BC096120 // Homo sapiens histone cluster 1, H2bf, mRNA (cDNA clone MGC:116766 IMAGE:40002352), complete cds. // gb // 11 // --- /// BC096123 // Homo sapiens histone cluster 1, H2bf, mRNA (cDNA clone MGC:116769 IMAGE:40002357), complete cds. // gb // 11 // --- /// NM_003522 // Homo sapiens histone cluster 1, H2bf (HIST1H2BF), mRNA. // refseq // 11 // --- /// uc003ngx.3 // --- // ucsc_genes // 11 // --- OTTHUMT00000040108 // vega // 3 // Cross Hyb Matching Probes /// GENSCAN00000029827 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000356530 // ensembl // 3 // Cross Hyb Matching Probes
11715119_s_at Human Genome PrimeView Array Homo sapiens 30-Mar-16 Consensus sequence Affymetrix Proprietary Database g157278360 g157278360 /TID=g157278360 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=0 /DEF=g157278360 /REP_ORG=Homo sapiens 157278360 g157278360 --- Hs.144372 February 2009 (Genome Reference Consortium GRCh37) chr15:62455736-62457482 (-) // 90.1 // q22.2 C2 calcium-dependent domain containing 4B C2CD4B chr15q22.2 full length ENSG00000205502 /// OTTHUMG00000171959 388125 A6NLJ0 --- 610344 NP_001007596 NM_001007595 0006906 // vesicle fusion // not recorded /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0017158 // regulation of calcium ion-dependent exocytosis // not recorded /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // inferred from direct assay 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0019905 // syntaxin binding // not recorded /// 0030276 // clathrin binding // not recorded --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 4 transcripts. // false // Matching Probes // A ENST00000380392(11),NM_001007595(11),OTTHUMT00000416117(11),uc002ahg.2 ENST00000380392 // ensembl_havana_transcript:known chromosome:GRCh38:15:62163535:62165283:-1 gene:ENSG00000205502 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001007595 // Homo sapiens C2 calcium-dependent domain containing 4B (C2CD4B), mRNA. // refseq // 11 // --- /// OTTHUMT00000416117 // otter:known chromosome:VEGA61:15:62163535:62165283:-1 gene:OTTHUMG00000171959 gene_biotype:protein_coding transcript_biotype:protein_coding // vega // 11 // --- /// uc002ahg.2 // --- // ucsc_genes // 11 // --- uc021snm.1 // ucsc_genes // 2 // Cross Hyb Matching Probes /// GENSCAN00000048176 // ensembl // 2 // Cross Hyb Matching Probes

Total number of rows: 49395

Table truncated, full table size 304084 Kbytes.




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