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Platform GPL15244 Query DataSets for GPL15244
Status Public on Feb 16, 2012
Title Agilent-025537 Murine herpesvirus 68 [Feature Number version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Murid gammaherpesvirus 4
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description 8 X 15K array; a total of 11,940 60-mer oligonucleotides with 20-nucleotide spacing were generated based on the MHV68/Murid herpesvirus 4 genomic sequence (NCBI RefSeq NC_001826) to enable triple probe coverage of every nucleotide of both strands of the virus.
 
Web link http://www.agilent.com/
Submission date Feb 16, 2012
Last update date Feb 16, 2012
Contact name Laurie Krug
Organization name Stony Brook University
Department Molecular Genetics and Microbiology
Street address 130 Life Sciences Bldg
City Stony Brook
State/province NY
ZIP/Postal code 11794
Country USA
 
Samples (8) GSM876830, GSM876831, GSM876832, GSM876833, GSM876834, GSM876835 
Series (2)
GSE35863 Tiled Array Experiment of Murine Gammaherpesvirus 68 Transcripts In Newly Infected Fibroblasts
GSE35866 Tiled Microarray Identification of Novel Viral Transcript Structures and Distinct Transcriptional Profiles During Two Modes of Productive Murine Gammaherpesvirus 68 Infection.

Data table header descriptions
ID FeatureNum
Row
Col
chr_coord
SubTypeMask
SubTypeName
Start
SEQUENCE
ProbeUID
ControlType
ProbeName
SPOT_ID
SystematicName
Description

Data table
ID Row Col chr_coord SubTypeMask SubTypeName Start SEQUENCE ProbeUID ControlType ProbeName SPOT_ID SystematicName Description
4 1 4 unmapped 0 0 GCAGGAGACAGATATTTTCAATACCTTGGGTGGTTGACCTGACAAGTTCCAAATCAGAAG 3 0 CUST_3589_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
5 1 5 unmapped 0 0 AGGACACCATTGTCATATGTACCAGTGTTATAGAGAGCATACTTGAACAGGTAACAATTG 5 0 CUST_4465_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
6 1 6 unmapped 0 0 GGGGGCTGTCTATGGCTTGGTTGAGGCCATTTTGAACATGTTGACTTCCAACTGCGTTCA 7 0 CUST_580_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
7 1 7 unmapped 0 0 GATATGAAAGATAGTCATAAGGAGAAATATCAATATTATGGCGATCGTGGGTCGTATCCA 9 0 CUST_2429_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
8 1 8 unmapped 0 0 ATGAGATGGAAAACTGGGAGAGATACAGATCTAGGGCCTTGAGGAAGGGCACAGTGAGTA 11 0 CUST_4769_PI419531987 MHV68\genome MHV68\genome Unknown
10 1 10 unmapped 0 0 GTAGCAATCCAAACTTTTTTGTGGGAGGCTGGTTTGAGTTTAATGCCAGGTTGATGGCCT 15 0 CUST_1408_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
11 1 11 unmapped 0 0 TAAAATTTTCACTGTACTTACTGGCAGAGTGTAGTGTGCCCAAGTAGGCATTCGGTAGCC 17 0 CUST_2565_PI419531987 MHV68\genome MHV68\genome Unknown
12 1 12 unmapped 0 0 TGGAAAGTTGGATACTACAGACGAGATACCAGTGGCGCTCATCATCACTCCTGTTAGGAT 19 0 CUST_2771_PI419531987 MHV68\genome MHV68\genome Unknown
13 1 13 unmapped 0 0 ATACGTGCTGGTGAAATTTTCTACCTCAGTCAGGGGTGTATTGAAGGTGGCGGTGACTTC 21 0 CUST_5094_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
14 1 14 unmapped 0 0 GAAAACATGGGCCACTGGACATAGTTCTGGATGGGAGACTCCTCCTGAGGTGCTTCCAGG 23 0 CUST_5368_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
16 1 16 unmapped 0 0 GACAGGATACTAGCCTGATGCTCTACCAATTGAGCTACCCTGGCAAGTGTTTTAGGGAAT 27 0 CUST_5892_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
17 1 17 unmapped 0 0 CAGCAACATTCCCTCAGAAAATGCTATAGAAACAACCTTCGTGCCCCCAGTGAGGACGCT 29 0 CUST_4422_PI419531987 MHV68\genome MHV68\genome Unknown
18 1 18 unmapped 0 0 AATTTTTACAACCCCTACCTACGCAAGGGCTCTAAGAAAAAGGCGGACCAGCCTTGCCAA 31 0 CUST_962_PI419531987 MHV68\genome MHV68\genome Unknown
20 1 20 unmapped 0 0 AGACGTAAGATGTTTCTGCCCCTCAACAAAAGGTGTTCGACCTTGGGGATGATGGCCGTG 35 0 CUST_1683_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
22 1 22 unmapped 0 0 GGGCTACAGGGACCGTTGGAACTGTTTCTGGTGGTCGAGGGACACTTTCTACCACCGTGG 39 0 CUST_1424_PI419531987 MHV68\genome MHV68\genome Unknown
23 1 23 unmapped 0 0 ATAATTATCTTCTACAGTTGGATAGAAAGTCTGCTGCCAGCCAAGGACAGGGCCCGGATG 41 0 CUST_4254_PI419531987 MHV68\genome MHV68\genome Unknown
24 1 24 unmapped 0 0 CATGCACAGAAACGCGTGTGTGTGATAGAGTTCAACGGACAGACCTCTCTAGAGGGCACA 43 0 CUST_428_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
28 1 28 unmapped 0 0 TAAAGTTGTCCTGCAGGAGACAGTTCTGCACCAGAAACAAGTAGTCCCTCATATCCTCCT 51 0 CUST_5864_PI419531989 MHV68\genome\rc MHV68\genome\rc Unknown
29 1 29 unmapped 0 0 TCGAGAGGATGCCTGGCACGCCCAGTCGGCGTCCCCCCGAACAGTCAGATAGTGAGTCTG 53 0 CUST_1657_PI419531987 MHV68\genome MHV68\genome Unknown
30 1 30 unmapped 0 0 CACTCTCTTGGGGAGAATAAAAACAGTTCTAGACGCAAGTGTGGCCCAGTTAACGGTGGC 55 0 CUST_4196_PI419531987 MHV68\genome MHV68\genome Unknown

Total number of rows: 12241

Table truncated, full table size 1801 Kbytes.




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