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Platform GPL15465 Query DataSets for GPL15465
Status Public on Apr 20, 2012
Title Agilent-035154 HFM87_33500_exp_v2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Haloferax mediterranei
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16035154 or 2535154.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Apr 19, 2012
Last update date Apr 20, 2012
Contact name Jing Han
E-mail(s) hanjing@im.ac.cn
Organization name Institute of Microbiology, Chinese Academy of Sciences
Street address NO.1 West Beichen Road, Chaoyang District
City Beijing
ZIP/Postal code 100101
Country China
 
Samples (10) GSM918870, GSM918871, GSM918872, GSM918873, GSM918874, GSM918875 
Series (2)
GSE37420 Genes differentially expressed Haloferax mediterranei strains: control wild-type strain vs ΔphaA1 strain
GSE37421 Genes differentially expressed Haloferax mediterranei strains: control wild-type strain vs ΔphaEC strain

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 HFM87_1440 HFM87_1440 FALSE unmapped ATCGTCATCATCGACGACGAGGGCGAAATCGTCCACGAGGACACGATTATCGCCATCGTC
5 96 156 HFM87_2052 HFM87_2052 FALSE unmapped GAATACGTCGTCGACGCAATCGAACGACTCGAAGCCCACTACGAGAAGTACGACGAGTTC
6 96 154 HFM87_1412 HFM87_1412 FALSE unmapped GTTCGGCTGTGAGATTATGGAGCACTACGGCAGCGAAGAACAGAAAGAAAAGTGGCTCCG
7 96 152 HFM87_3294 HFM87_3294 FALSE unmapped CAGTTGCCGGTAGTACGATTTTCCTCTTCGTCTTGTCGATGTTGCCGTCACCGCTCAAGC
8 96 150 HFM87_799 HFM87_799 FALSE unmapped GTCAAGAAGGCCAAAACGAGCAAACAGAAGGCCGAAACGTACCTCGAAAAGGTCGAAGAC
9 96 148 HFM87_3074 HFM87_3074 FALSE unmapped TCCAGGAGATGCGCAAGGATCTGGAACTGGACCTCGAAGAGCGGATCCGGCTGGATCTAG
10 96 146 HFM87_1157 HFM87_1157 FALSE unmapped GATACGAGAAGGATATCGTCGATGACCAACTCCATATCACGTGGAACGAGGAACTCACAG
11 96 144 HFM87_3507 HFM87_3507 FALSE unmapped CATCGTGGATGAGAACTATCTCAATGTCGATGAAGAGACCATCGAGTACACTCTCGGGAC
12 96 142 HFM87_1666 HFM87_1666 FALSE unmapped GTAATTCAAGCGGACGTAATCGTGACCGTCGCCGACATTCCCTTACTCGGAATTAGTCTC
13 96 140 HFM87_2873 HFM87_2873 FALSE unmapped CAGTTCGAGGGTGTCGTCCTCGTTAATTTCGGAACGATGGGTGTCGACCAGTCGATTCCC
14 96 138 HFM87_2705 HFM87_2705 FALSE unmapped GAGATGCTGCTGTCGTTTACACAGGACTTAGACGAGTTCGCCGTGATGGAGGAGACCTAC
15 96 136 HFM87_2648 HFM87_2648 FALSE unmapped AATCCGGAGGGTGTCGATTACGGATGGGTCATGCAGATGACCTTCGTGACGACGATTCTC
16 96 134 HFM87_3552 HFM87_3552 FALSE unmapped CTCGGACCAAATGGTGCAGGGAAATCCACCCTAATGCGGATTATTACTACCTACCAAGAA
17 96 132 HFM87_2207 HFM87_2207 FALSE unmapped TACATACTGTATGCGCTGTTTCTCATCCCACTCGTGCTGTTCGTCTCGACGCTGGTATTC
18 96 130 HFM87_117 HFM87_117 FALSE unmapped TCCTTCTACATTTACAACACGAAGGAAGAAGTCGACAAGTTGGTCGAAGGGCTCGACGTG
19 96 128 HFM87_1479 HFM87_1479 FALSE unmapped AAAAATCCCGAGCGAGTCCTCGAAACAAACCTGTCTGTCGAGATGGATAACGGAGATGTC
20 96 126 HFM87_2647 HFM87_2647 FALSE unmapped GTAGGTATCGACATCATTCTCGTCGGCGACAGCATGGGCAATACGGAACTCGGCTACGAG

Total number of rows: 15744

Table truncated, full table size 1638 Kbytes.




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