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Platform GPL15502 Query DataSets for GPL15502
Status Public on Jul 12, 2012
Title NimbleGen AUTS2 high density array (hg18)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see http://www.nimblegen.com/products/chip/custom/index.html
 
Description with probes tiled across 7q11.22 (hg18; chr7:65,992,311-72,003,221) at a median density of 75 bp
 
Submission date Apr 30, 2012
Last update date Jul 12, 2012
Contact name Els Voorhoeve
E-mail(s) e.voorhoeve@vumc.nl
Phone +31204440157
Organization name VU medical center
Department Clinical Genetics
Lab Cytogenetics
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Samples (1) GSM925102
Series (2)
GSE37654 Oligo array for calling CNV's for AUTS2 project [NimbleGen]
GSE37657 AUTS2 project

Data table header descriptions
ID PROBE_ID from .pos file
SEQ_ID
CHROMOSOME
RANGE_GB
RANGE_START
RANGE_END
LENGTH
GC
SEQUENCE
SPOT_ID

Data table
ID SEQ_ID CHROMOSOME RANGE_GB RANGE_START RANGE_END LENGTH GC SEQUENCE SPOT_ID
CHR01FS000000495 chr1:1-247249719 chr1 NC_000001.9 495 544 50 0.62 CCCGGGTCTGACCTGAGGAGAACTGTGCTCCGCCTTCAGAGTACCACCGA
CHR01FS000062164 chr1:1-247249719 chr1 NC_000001.9 62164 62213 50 0.6 TTCTCCTAACGTTATCCCTCTCCTTGCCTCCCACCTCCCGACAGGCCCTG
CHR01FS000124735 chr1:1-247249719 chr1 NC_000001.9 124735 124790 56 0.36 TTGGCGCAGAAACTCACTCCAAATAAATTACCTACCAAAACATTTACATAATGGTG
CHR01FS000217736 chr1:1-247249719 chr1 NC_000001.9 217736 217792 57 0.3 GATATTTTCTTAACTCCAGAGAGCATTGCAAAATTCATTTATGAAAACCTCTAAAAG
CHR01FS000307678 chr1:1-247249719 chr1 NC_000001.9 307678 307728 51 0.43 ATCAAATTATGTTTCCCATGCATCAGGTGCAATGGGAAGCTCTTCTGGAGA
CHR01FS000369740 chr1:1-247249719 chr1 NC_000001.9 369740 369793 54 0.35 CTCCTTGGTTAAATGTACTCCTAAGTACAATCCTAAATGTGCTCCTAAACAAAA
CHR01FS000431978 chr1:1-247249719 chr1 NC_000001.9 431978 432027 50 0.5 GGGTTGCTTCCAGGGTGGGATGGTTGTTGGATAGAGCTGTTTGTGCATTT
CHR01FS000511482 chr1:1-247249719 chr1 NC_000001.9 511482 511540 59 0.39 CAGCAGATTCACTCTGTTCTGTTTCATTGTTGCTTAGTTTGCGTTTTGTTTCTCCAACT
CHR01FS000574067 chr1:1-247249719 chr1 NC_000001.9 574067 574120 54 0.3 ACCTTATAGATAAAGGTATCTATAAGGTATAGATAAAGGTAAGGTATCTATACC
CHR01FS000637425 chr1:1-247249719 chr1 NC_000001.9 637425 637481 57 0.35 GAATTTATGAACTCTACATGTCGCTTGATGTGTGCCTCAGGGTATACTTTTTTTTTT
CHR01FS000651101 chr1:649813-670978 chr1 NC_000001.9 651101 651158 58 0.33 TTGGCGCAGAAACTCACTCCAAATAAATTACCTATCAAAATATTTACATAATGGTGGA
CHR01FS000652086 chr1:649813-670978 chr1 NC_000001.9 652086 652135 50 0.66 GAGGCCAACTTGAGGAGGCCTGGCCTCTGCCTCCCGCATTGCCCAGCTGT
CHR01FS000653236 chr1:649813-670978 chr1 NC_000001.9 653236 653285 50 0.66 GAGACCCAACCAGGAAGAAGAGCTGGGCCCGGAGAGAACGCCCGGAGGGT
CHR01FS000654396 chr1:649813-670978 chr1 NC_000001.9 654396 654445 50 0.6 GGACAGGAGTTGGGCGTGGAGAGGCCACCGTGAGGCATAAGCTGGATGTA
CHR01FS000655711 chr1:649813-670978 chr1 NC_000001.9 655711 655760 50 0.5 TGTGTGGGTCTACCTCCTGGGACCCTTCCTAACATATTAGTCAGAGTCCA
CHR01FS000657146 chr1:649813-670978 chr1 NC_000001.9 657146 657206 61 0.38 ACAGTATGTATCCTACAGCGTAATTGTAAAAACATACACAGTCGTCATCCCTCAGTATACA
CHR01FS000658201 chr1:649813-670978 chr1 NC_000001.9 658201 658250 50 0.5 CAGTCCCAGCTATCTGAACTTACTGAGAATGTTCAGGGCCTGGAGAGAAG
CHR01FS000659671 chr1:649813-670978 chr1 NC_000001.9 659671 659724 54 0.2 AATATGAGTTCTTTTGTCTATGTAAAATAATCAAACAAAAAATGACTTACTAAA
CHR01FS000660581 chr1:649813-670978 chr1 NC_000001.9 660581 660630 50 0.44 AAAAACATATAGTCGTCGTCCCTCAGTATACAGAATTAGTTCCAGCCCCC
CHR01FS000661611 chr1:649813-670978 chr1 NC_000001.9 661611 661660 50 0.52 CCCAGCTACCTGAACTTACTGAGAAAGTTCAGAGCCTGGAGAGAAGGCTG

Total number of rows: 126522

Table truncated, full table size 17048 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15502_091013_HG18_UWash_SG_CGH.gff.gz 3.1 Mb (ftp)(http) GFF
GPL15502_091013_HG18_UWash_SG_CGH.ndf.gz 8.4 Mb (ftp)(http) NDF
GPL15502_091013_HG18_UWash_SG_CGH.pos.gz 1.2 Mb (ftp)(http) POS
GPL15502_091013_HG18_UWash_SG_CGH_HX12.ncd.gz 320 b (ftp)(http) NCD

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