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Platform GPL15525 Query DataSets for GPL15525
Status Public on Aug 01, 2012
Title Agilent-015933 Bombyx mori 015933_D_20070204 [ProbeName version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bombyx mori
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description User Design

Arrays of this design have barcodes that begin with 16015933 or 2515933.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date May 03, 2012
Last update date Aug 01, 2012
Contact name Hiromasa Ono
E-mail(s) hono@dbcls.rois.ac.jp
Organization name Research Organization of Information and Systems
Department Database Center for Life Science (DBCLS)
Lab Mishima Lab.
Street address National Institute of Genetics, Yata 1111
City Mishima
State/province Shizuoka
ZIP/Postal code 411-8540
Country Japan
 
Samples (8) GSM926580, GSM926581, GSM926582, GSM926583, GSM1346427, GSM1346428 
Series (2)
GSE37735 Gene expression of abnormal uric acid synthesis animal model of silk worm Bombyx mori.
GSE55816 Gene expression of ultra violet irradiation of silk worm Bombyx mori larvae

Data table header descriptions
ID NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
(+)E1A_r60_1 (+)E1A_r60_1 pos
(+)E1A_r60_3 (+)E1A_r60_3 pos
(+)E1A_r60_a104 (+)E1A_r60_a104 pos
(+)E1A_r60_a107 (+)E1A_r60_a107 pos
(+)E1A_r60_a135 (+)E1A_r60_a135 pos
(+)E1A_r60_a20 (+)E1A_r60_a20 pos
(+)E1A_r60_a22 (+)E1A_r60_a22 pos
(+)E1A_r60_a97 (+)E1A_r60_a97 pos
(+)E1A_r60_n11 (+)E1A_r60_n11 pos
(+)E1A_r60_n9 (+)E1A_r60_n9 pos
(+)eQC-39 (+)eQC-39 pos
(+)eQC-40 (+)eQC-40 pos
(+)eQC-41 (+)eQC-41 pos
(+)eQC-42 (+)eQC-42 pos
(-)3xSLv1 (-)3xSLv1 neg
DCP_1_0 DCP_1_0 pos
DCP_1_1 DCP_1_1 pos
DCP_1_11 DCP_1_11 pos
DCP_1_2 DCP_1_2 pos
DCP_1_4 DCP_1_4 pos

Total number of rows: 43863

Table truncated, full table size 4612 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15525_015933_D_GEO_20090618.txt.gz 1.6 Mb (ftp)(http) TXT

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