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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 12, 2012 |
| Title |
A-UMCU-M44K-2.0 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
Holstege Lab, UMC Utrecht, The Netherlands |
| Manufacture protocol |
1. Slides are obtained from a commercial provider (Agilent) and reannotated using blat to obtain the latest gene annotations from ensembl.
|
| Support |
glass |
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| Web link |
http://microarrays.holstegelab.nl
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| Contributor(s) |
van Leenen D, Groot Koerkamp M, Lijnzaad P, Bakker L, Sluiters E, van Hooff S, Kemmeren P, Holstege F |
| Submission date |
Jul 11, 2012 |
| Last update date |
Jan 18, 2013 |
| Contact name |
Sander van Hooff |
| E-mail(s) |
s.r.vanhooff@umcutrecht.nl
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| Organization name |
UMC Utrecht
|
| Department |
Department of Molecular Cancer Research
|
| Lab |
Holstege Lab
|
| Street address |
Universiteitsweg 100
|
| City |
Utrecht |
| State/province |
Utrecht |
| ZIP/Postal code |
3584 CG |
| Country |
Netherlands |
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| Samples (16)
|
GSM988387, GSM988388, GSM988389, GSM988390, GSM1014607, GSM1014608
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| Series (2) |
| GSE40208 |
JeB001: Elucidation of the distal convoluted tubule transcriptome identified new candidate players in magnesium balance |
| GSE41320 |
MWi001: Identification of Srp9 as a febrile seizure susceptibility gene |
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| Data table header descriptions |
| ID |
primary identifier |
| METACOLUMN |
metagrid column position |
| METAROW |
metagrid row position |
| COLUMN |
grid column position |
| ROW |
grid row position |
| SPOT_ID |
alternative spot identifier |
| SUPPLIER_ID |
original supplier id, e.g. from agilent or operon |
| REPORTER_GROUP |
class the reporter belongs to, e.g. controls or genes |
| SEQUENCE |
nucleotide sequence |
| SYSTEMATIC_NAME |
systematic name of the gene |
| GENE_SYMBOL |
Gene symbol for the gene |
| ORGANISM |
organism |
| PRIMARY_DB |
primay external database identifier, format is <extdb>:<identifier> |
| ORF |
|
| Data table |
| ID |
METACOLUMN |
METAROW |
COLUMN |
ROW |
SPOT_ID |
SUPPLIER_ID |
REPORTER_GROUP |
SEQUENCE |
SYSTEMATIC_NAME |
GENE_SYMBOL |
ORGANISM |
PRIMARY_DB |
ORF |
| 1 |
1 |
1 |
1 |
1 |
QCAA003686 |
GE_BrightCorner |
qc_control |
|
|
|
|
|
|
| 2 |
1 |
1 |
2 |
1 |
QCAA003686 |
GE_BrightCorner |
qc_control |
|
|
|
|
|
|
| 3 |
1 |
1 |
3 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 4 |
1 |
1 |
4 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 5 |
1 |
1 |
5 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 6 |
1 |
1 |
6 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 7 |
1 |
1 |
7 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 8 |
1 |
1 |
8 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 9 |
1 |
1 |
9 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 10 |
1 |
1 |
10 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 11 |
1 |
1 |
11 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 12 |
1 |
1 |
12 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 13 |
1 |
1 |
13 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 14 |
1 |
1 |
14 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 15 |
1 |
1 |
15 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 16 |
1 |
1 |
16 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 17 |
1 |
1 |
17 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 18 |
1 |
1 |
18 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 19 |
1 |
1 |
19 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 20 |
1 |
1 |
20 |
1 |
MMAC009219 |
A_52_P361081 |
gene |
ACCTGAGCTACACCGGGTAACAGTGTCATTGAAGACACCATAGGGTTACCTCCCAGCTGC |
ENSMUSG00000029032 |
Arhgef16 |
Mus musculus |
ensembl:ENSMUSG00000029032 |
Arhgef16 |
Total number of rows: 45220
Table truncated, full table size 7258 Kbytes.
| Supplementary data files not provided |
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