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Platform GPL16007 Query DataSets for GPL16007
Status Public on May 27, 2013
Title Agilent-018261 Coupland Lab (MPIPZ)-Arabidopsis/Arabis-244K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer ImaGenes GmbH (Berlin, De)
Manufacture protocol Oligos were designed using the eArray application based on the Arabidopsis DNA sequence starting from the less conserved 3´ end and going in the direction of the 5´ end of every gene. Up to 10 oligos / Arabidopsis gene were designed against the DNA sequence (oligo-set). Total of 244K array. The calculated median distance between the end and the start of two consecutive oligos was 27 nt. In situ synthesized 60 mer long oligoes according to stadard Agilent manufacture protocol.
 
Description Custom Arabidopsis array for heterologuos hybridization studies.
 
Submission date Aug 29, 2012
Last update date Aug 29, 2012
Contact name Emiel Ver Loren van Themaat
E-mail(s) themaat@mpiz-koeln.mpg.de
Organization name Max Planck Institute
Street address Carl von linneweg
City Cologne
ZIP/Postal code 50823
Country Germany
 
Samples (16) GSM994450, GSM994451, GSM994452, GSM994453, GSM994454, GSM994455 
Series (1)
GSE40455 Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina.

Data table header descriptions
ID
description
curator_summary Curator summary according to TAIR
ORF TAIR ID

Data table
ID description curator_summary ORF
AT1G01010.1 ANAC001 (Arabidopsis NAC domain containing protein 1); transcription factor AT1G01010
AT1G01020.2 ARV1 AT1G01020
AT1G01030.1 NGA3 (NGATHA3); transcription factor AT1G01030
AT1G01040.1 DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. AT1G01040
AT1G01050.1 ATPPA1 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 1); inorganic diphosphatase/ pyrophosphatase Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate. AT1G01050
AT1G01060.3 LHY (LATE ELONGATED HYPOCOTYL); DNA binding myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 AT1G01060
AT1G01060.4 LHY (LATE ELONGATED HYPOCOTYL) myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 AT1G01060
AT1G01070.2 nodulin MtN21 family protein AT1G01070
AT1G01080.2 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative AT1G01080
AT1G01090.1 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring) pyruvate dehydrogenase E1 alpha subunit AT1G01090
AT1G01100.1 60S acidic ribosomal protein P1 (RPP1A) AT1G01100
AT1G01100.2 60S acidic ribosomal protein P1 (RPP1A) AT1G01100
AT1G01100.4 60S acidic ribosomal protein P1 (RPP1A) AT1G01100
AT1G01110.1 IQD18 (IQ-domain 18) AT1G01110
AT1G01120.1 KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase Encodes a condensing enzyme (3-ketoacyl-CoA synthase) which is involved in the critical fatty acid elongation process in wax biosynthesis. AT1G01120
AT1G01130.1 AT1G01130
AT1G01140.3 CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase Encodes a CBL-interacting protein kinase with similarity to SOS2 AT1G01140
AT1G01150.1 DNA binding / zinc ion binding AT1G01150
AT1G01160.1 GIF2 (GRF1-INTERACTING FACTOR 2) Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA AT1G01160
AT1G01170.2 ozone-responsive stress-related protein, putative AT1G01170

Total number of rows: 29936

Table truncated, full table size 2816 Kbytes.




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Supplementary file Size Download File type/resource
GPL16007_018261_D_20071126.gal.gz 2.5 Mb (ftp)(http) GAL
GPL16007_Albani_244K_DesignTable.txt.gz 11.4 Mb (ftp)(http) TXT

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