GEO help: Mouse over screen elements for information.
Status
Public on Nov 10, 2012
Title
NimbleGen Mouse 2.1M deluxe promoter array (ver. 2)
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Roche Nimblegen
Manufacture protocol
2.1 million probes (50-70nt long) covering annotate promoter regions as well as CpG islands across the mouse genome (mm9 build).
Submission date
Oct 05, 2012
Last update date
Nov 10, 2012
Contact name
John Paterson Thomson
E-mail(s)
john.thomson@igmm.ed.ac.uk Organization name
University of Edinburgh
Department
MRC Human Genetics Unit
Lab
Meehan
Street address
Crewe Road
City
Edinburgh
ZIP/Postal code
EH4 2XU
Country
United Kingdom
Samples (35)
GSM1016353 , GSM1016354 , GSM1016355 , GSM1016356 , GSM1016357 , GSM1016358
GSM1016359 ,
GSM1016360 ,
GSM1016361 ,
GSM1016362 ,
GSM1016379 ,
GSM1016380 ,
GSM1016381 ,
GSM1016382 ,
GSM1016383 ,
GSM1016384 ,
GSM1016385 ,
GSM1016386 ,
GSM1016387 ,
GSM1016388 ,
GSM1016399 ,
GSM1016400 ,
GSM1016401 ,
GSM1016402 ,
GSM1016403 ,
GSM1016404 ,
GSM1016405 ,
GSM1016406 ,
GSM1016407 ,
GSM1016408 ,
GSM1092229 ,
GSM1092230 ,
GSM1092236 ,
GSM1092237 ,
GSM1092238 Series (6)
GSE30761 Mammalian X upregulation
GSE40540 IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers
GSE41392 IP of 5-methylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (7 day)
GSE41395 IP of 5-methylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (1 day)
GSE41397 IP of 5-methylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (91 day)
GSE44835 Upregulation of the mammalian X chromosome is associated with enhanced transcription initiation, MOF-mediated H4K16 acetylation, and longer RNA half-life
Data table header descriptions ID SEQUENCE Sequence of oligonucleotide
CHROMOSOME Chromosome to which the sequence maps
RANGE_START Start of amplicon
RANGE_END RANGE_GB GenBank Accession number
Data table ID SEQUENCE CHROMOSOME RANGE_START RANGE_END RANGE_GB CHR01FS003521489
AATATCCTATAAGATTGGCACAGAAAGCACACTTGAGTTAGTGAGGACTTCAGG
chr1
3521489
3521543
NC_000067.5 CHR01FS003521569
TGTGCAGGTGGACACCTAGGATTGCATGATAGCTTGAAAGGATTAAATCTC
chr1
3521569
3521620
NC_000067.5 CHR01FS003521689
GTGGTGGCCTATTACCTCGCGGCACCGCAGCCTGGCACCCACCCGGCTGG
chr1
3521689
3521739
NC_000067.5 CHR01FS003521789
GGCAGCGGGAGAGTGTCTGAGCTCCCCGCGGGGAGGCTGGACAGCCCTGG
chr1
3521789
3521839
NC_000067.5 CHR01FS003521874
TCATGGCATCGTTGGCAGACCGGGTCTGGGGCAACAGGCGCATCGCCGCC
chr1
3521874
3521924
NC_000067.5 CHR01FS003521969
AACAAATGGATCTATGTACACCACGCTTCCCCAAGATGAGCCTGACACTG
chr1
3521969
3522019
NC_000067.5 CHR01FS003522069
CATCTTTGCCCTTAAAAATCTGCCGCTCTCCAAGCTCCTCCTCCTGGCCC
chr1
3522069
3522119
NC_000067.5 CHR01FS003658583
CAGCCAGCAACACAATTGTCTGACAGACTGTGGTCTCCTTTATATGTTCA
chr1
3658583
3658633
NC_000067.5 CHR01FS003658683
GACCCAGTGGATACTGTCTCATTGTAGTATTTTTCTCCACGTTTTCCTACTTCT
chr1
3658683
3658737
NC_000067.5 CHR01FS003658798
GATTCAAAAGTCTAATAAATGTTACAATTAAAATGACTTCTTCAGTACACTGAGTT
chr1
3658798
3658854
NC_000067.5 CHR01FS003658883
ATCTGTAGGAGGCACACACAGGTGTTTAGTGACAATAACTAATAAGCACTTATATTGCTGAT
chr1
3658883
3658945
NC_000067.5 CHR01FS003658993
CAAGTTACCAAATAGGTTGATAAGTTTTTGGTACCACACTGCTAGATTAAAAC
chr1
3658993
3659046
NC_000067.5 CHR01FS003659103
GTTCTTCCTCATAATTAAAGAATACCCAACTTGGACCTTCCAATACTTTTCTG
chr1
3659103
3659156
NC_000067.5 CHR01FS003659198
TCTCCCAGGGTCTGAAATATATATGTTTCCACATCAATTTGTCTAACAGTACACCATGC
chr1
3659198
3659257
NC_000067.5 CHR01FS003659283
AATACGTTCTAAGGCAGGAGGTCTAGGGCCATGCTCACCCTGCTTTACAG
chr1
3659283
3659333
NC_000067.5 CHR01FS003659383
CAAGGACGCTGACTTCTGCCAGAAAGAGAAGTGTGTGAATCTATGTTACAAAT
chr1
3659383
3659436
NC_000067.5 CHR01FS003659528
CAAAAAGCATACAGGTGAAAGTACAGAGTACATGCCAGTATCAGCCCACTT
chr1
3659528
3659579
NC_000067.5 CHR01FS003659613
ACTAAATTGCTTTAAAGCCAAGGAGTCTCTAGGGTAACAGCCTCTATATTTTTC
chr1
3659613
3659667
NC_000067.5 CHR01FS003659728
AAAAGAACAGATTTCTGAGCATATTGTCCCACCACATTCCTACATCTGTGCAGTAATG
chr1
3659728
3659786
NC_000067.5 CHR01FS003659828
ACTTCAGTGTATAAGCAAAGTGACAACTATGTAAAGAGACTTGGTGGATCAAGTGAGAAG
chr1
3659828
3659888
NC_000067.5
2085858 217770 Kbytes .Supplementary file Size Download File type/resource GPL16143_5hmC_MM9_Promoter.ndf.gz
139.9 Mb
(ftp) (http) NDF
GPL16143_5hmC_MM9_Promoter_HmeDIP_HX1.pos.gz
17.1 Mb
(ftp) (http) POS
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