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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 10, 2012 |
| Title |
NimbleGen Mouse 2.1M deluxe promoter array (ver. 3) |
| Technology type |
spotted oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
Roche Nimblegen |
| Manufacture protocol |
2.1 million probes (50-70nt long) covering annotate promoter regions as well as CpG islands across the mouse genome (mm9 build).
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| Submission date |
Oct 05, 2012 |
| Last update date |
Nov 10, 2012 |
| Contact name |
John Paterson Thomson |
| E-mail(s) |
john.thomson@igmm.ed.ac.uk
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| Organization name |
University of Edinburgh
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| Department |
MRC Human Genetics Unit
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| Lab |
Meehan
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| Street address |
Crewe Road
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| City |
Edinburgh |
| ZIP/Postal code |
EH4 2XU |
| Country |
United Kingdom |
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| Samples (30)
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GSM1016363, GSM1016364, GSM1016365, GSM1016366, GSM1016367, GSM1016368
GSM1016369, GSM1016370, GSM1016371, GSM1016372, GSM1016389, GSM1016390, GSM1016391, GSM1016392, GSM1016393, GSM1016394, GSM1016395, GSM1016396, GSM1016397, GSM1016398, GSM1016409, GSM1016410, GSM1016411, GSM1016412, GSM1016413, GSM1016414, GSM1016415, GSM1016416, GSM1016417, GSM1016418
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| Series (4)
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| GSE40540 |
IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers |
| GSE41393 |
IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (7 day) |
| GSE41396 |
IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (1 day) |
| GSE41398 |
IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (91 day) |
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| Data table header descriptions |
| ID |
|
| SEQUENCE |
Sequence of oligonucleotide |
| CHROMOSOME |
Chromosome to which the sequence maps |
| RANGE_START |
Start of amplicon |
| RANGE_END |
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| RANGE_GB |
GenBank Accession number |
| Data table |
| ID |
SEQUENCE |
CHROMOSOME |
RANGE_START |
RANGE_END |
RANGE_GB |
| CHR01FS003521489 |
AATATCCTATAAGATTGGCACAGAAAGCACACTTGAGTTAGTGAGGACTTCAGG |
chr1 |
3521489 |
3521543 |
NC_000067.5 |
| CHR01FS003521569 |
TGTGCAGGTGGACACCTAGGATTGCATGATAGCTTGAAAGGATTAAATCTC |
chr1 |
3521569 |
3521620 |
NC_000067.5 |
| CHR01FS003521689 |
GTGGTGGCCTATTACCTCGCGGCACCGCAGCCTGGCACCCACCCGGCTGG |
chr1 |
3521689 |
3521739 |
NC_000067.5 |
| CHR01FS003521789 |
GGCAGCGGGAGAGTGTCTGAGCTCCCCGCGGGGAGGCTGGACAGCCCTGG |
chr1 |
3521789 |
3521839 |
NC_000067.5 |
| CHR01FS003521874 |
TCATGGCATCGTTGGCAGACCGGGTCTGGGGCAACAGGCGCATCGCCGCC |
chr1 |
3521874 |
3521924 |
NC_000067.5 |
| CHR01FS003521969 |
AACAAATGGATCTATGTACACCACGCTTCCCCAAGATGAGCCTGACACTG |
chr1 |
3521969 |
3522019 |
NC_000067.5 |
| CHR01FS003522069 |
CATCTTTGCCCTTAAAAATCTGCCGCTCTCCAAGCTCCTCCTCCTGGCCC |
chr1 |
3522069 |
3522119 |
NC_000067.5 |
| CHR01FS003658583 |
CAGCCAGCAACACAATTGTCTGACAGACTGTGGTCTCCTTTATATGTTCA |
chr1 |
3658583 |
3658633 |
NC_000067.5 |
| CHR01FS003658683 |
GACCCAGTGGATACTGTCTCATTGTAGTATTTTTCTCCACGTTTTCCTACTTCT |
chr1 |
3658683 |
3658737 |
NC_000067.5 |
| CHR01FS003658798 |
GATTCAAAAGTCTAATAAATGTTACAATTAAAATGACTTCTTCAGTACACTGAGTT |
chr1 |
3658798 |
3658854 |
NC_000067.5 |
| CHR01FS003658883 |
ATCTGTAGGAGGCACACACAGGTGTTTAGTGACAATAACTAATAAGCACTTATATTGCTGAT |
chr1 |
3658883 |
3658945 |
NC_000067.5 |
| CHR01FS003658993 |
CAAGTTACCAAATAGGTTGATAAGTTTTTGGTACCACACTGCTAGATTAAAAC |
chr1 |
3658993 |
3659046 |
NC_000067.5 |
| CHR01FS003659103 |
GTTCTTCCTCATAATTAAAGAATACCCAACTTGGACCTTCCAATACTTTTCTG |
chr1 |
3659103 |
3659156 |
NC_000067.5 |
| CHR01FS003659198 |
TCTCCCAGGGTCTGAAATATATATGTTTCCACATCAATTTGTCTAACAGTACACCATGC |
chr1 |
3659198 |
3659257 |
NC_000067.5 |
| CHR01FS003659283 |
AATACGTTCTAAGGCAGGAGGTCTAGGGCCATGCTCACCCTGCTTTACAG |
chr1 |
3659283 |
3659333 |
NC_000067.5 |
| CHR01FS003659383 |
CAAGGACGCTGACTTCTGCCAGAAAGAGAAGTGTGTGAATCTATGTTACAAAT |
chr1 |
3659383 |
3659436 |
NC_000067.5 |
| CHR01FS003659528 |
CAAAAAGCATACAGGTGAAAGTACAGAGTACATGCCAGTATCAGCCCACTT |
chr1 |
3659528 |
3659579 |
NC_000067.5 |
| CHR01FS003659613 |
ACTAAATTGCTTTAAAGCCAAGGAGTCTCTAGGGTAACAGCCTCTATATTTTTC |
chr1 |
3659613 |
3659667 |
NC_000067.5 |
| CHR01FS003659728 |
AAAAGAACAGATTTCTGAGCATATTGTCCCACCACATTCCTACATCTGTGCAGTAATG |
chr1 |
3659728 |
3659786 |
NC_000067.5 |
| CHR01FS003659828 |
ACTTCAGTGTATAAGCAAAGTGACAACTATGTAAAGAGACTTGGTGGATCAAGTGAGAAG |
chr1 |
3659828 |
3659888 |
NC_000067.5 |
Total number of rows: 2056330
Table truncated, full table size 214694 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL16144_5mC_MM9_Promoter.ndf.gz |
135.3 Mb |
(ftp)(http) |
NDF |
| GPL16144_5mC_MM9_Promoter_MeDIP_HX1.pos.gz |
16.8 Mb |
(ftp)(http) |
POS |
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