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GEO help: Mouse over screen elements for information. |
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Status |
Public on Oct 10, 2012 |
Title |
Illumina HiSeq 2000 (Neurospora crassa) |
Technology type |
high-throughput sequencing |
Distribution |
virtual |
Organism |
Neurospora crassa |
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Submission date |
Oct 10, 2012 |
Last update date |
Nov 05, 2015 |
Contact name |
GEO |
Country |
USA |
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Samples (419)
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GSM1018089, GSM1018090, GSM1018091, GSM1018092, GSM1018093, GSM1018094
GSM1018095, GSM1018096, GSM1018097, GSM1018098, GSM1018099, GSM1018100, GSM1018101, GSM1018102, GSM1018103, GSM1018104, GSM1088676, GSM1088677, GSM1088678, GSM1154268, GSM1154269, GSM1238597, GSM1238602, GSM1238604, GSM1238606, GSM1238609, GSM1260334, GSM1260335, GSM1260336, GSM1260337, GSM1262788, GSM1262789, GSM1262790, GSM1262792, GSM1262793, GSM1262794, GSM1262795, GSM1262796, GSM1280356, GSM1280357, GSM1280358, GSM1280359, GSM1280360, GSM1280361, GSM1280889, GSM1280890, GSM1280891, GSM1280892, GSM1280893, GSM1280894, GSM1295595, GSM1295596, GSM1295597, GSM1295598, GSM1295599, GSM1295600, GSM1295601, GSM1295602, GSM1295603, GSM1295604, GSM1498891, GSM1498892, GSM1498893, GSM1498894, GSM1498895, GSM1517604, GSM1517605, GSM1517606, GSM1517607, GSM1517608, GSM1517609, GSM1517610, GSM1517611, GSM1517612, GSM1517613, GSM1517614, GSM1517615, GSM1517616, GSM1517617, GSM1517618, GSM1517619, GSM1517620, GSM1517621, GSM1517622, GSM1517623, GSM1517624, GSM1674169, GSM1674170, GSM1674171, GSM1674172, GSM1674173, GSM1674174, GSM1674175, GSM1674176, GSM1674177, GSM1674178, GSM1674179, GSM1674200, GSM1674201, GSM1674202, GSM1674203, GSM1674204, GSM1674205, GSM1674206, GSM1674207, GSM1674208, GSM1674209, GSM1674210, GSM1674211, GSM1674212, GSM1674213, GSM1674214, GSM1674215, GSM1674216, GSM1674217, GSM1674218, GSM1674219, GSM1674220, GSM1674221, GSM1686127, GSM1686128, GSM1686129, GSM1686130, GSM1686131, GSM1686132, GSM1686133, GSM1686134, GSM1686135, GSM1686136, GSM1686137, GSM1686138, GSM1686139, GSM1686140, GSM1686141, GSM1686142, GSM1686143, GSM1686144, GSM1686145, GSM1686146, GSM1686147, GSM1686148, GSM1686149, GSM1686150, GSM1825738, GSM1825739, GSM1825740, GSM1825741, GSM1825742, GSM1825743, GSM1825744, GSM1825745, GSM1904310, GSM1904311, GSM1932126, GSM1932127, GSM1932128, GSM2143335, GSM2143336, GSM2143337, GSM2143338, GSM2143339, GSM2264174, GSM2264175, GSM2356758, GSM2356759, GSM2356760, GSM2356761, GSM2356762, GSM2356763, GSM2356764, GSM2356765, GSM2356766, GSM2356767, GSM2356768, GSM2356769, GSM2356770, GSM2356771, GSM2356772, GSM2356773, GSM2356774, GSM2356775, GSM2356776, GSM2356777, GSM2385263, GSM2385264, GSM2385265, GSM2385266, GSM2385267, GSM2385268, GSM2407767, GSM2407768, GSM2407769, GSM2407770, GSM2407771, GSM2407772, GSM2407773, GSM2407774, GSM2407775, GSM2407776, GSM2407777, GSM2407778, GSM2438493, GSM2438494, GSM2438495, GSM2438496, GSM2438497, GSM2438498, GSM2438499, GSM2438500, GSM2438501, GSM2438502, GSM2438503, GSM2438504, GSM2438505, GSM2438506, GSM2438507, GSM2438508, GSM2438509, GSM2438510, GSM2507516, GSM2507517, GSM2507518, GSM2507519, GSM2507520, GSM2507521, GSM2507522, GSM2507523, GSM2507524, GSM2507525, GSM2507526, GSM2507527, GSM2507528, GSM2507529, GSM2507530, GSM2507531, GSM2507532, GSM2507533, GSM2507534, GSM2507535, GSM2507536, GSM2507537, GSM2507538, GSM2507539, GSM2507540, GSM2507541, GSM2507542, GSM2507543, GSM2507545, GSM2507547, GSM2521562, GSM2521563, GSM2521564, GSM2521565, GSM2521566, GSM2521567, GSM2521568, GSM2521569, GSM2521570, GSM2521571, GSM2521572, GSM2521573, GSM2521574, GSM2521575, GSM2521576, GSM2521577, GSM2521578, GSM2521579, GSM2552873, GSM2552874, GSM2576087, GSM2576088, GSM2576089, GSM2576090, GSM2576091, GSM2576092, GSM2627468, GSM2627469, GSM2627476, GSM2627477, GSM2627478, GSM2627479, GSM2637961, GSM2637962, GSM2637963, GSM2686167, GSM2686168, GSM2686169, GSM2686170, GSM2686171, GSM2686172, GSM2686173, GSM2686174, GSM2686175, GSM2686176, GSM2686177, GSM2686178, GSM3048710, GSM3048711, GSM3103245, GSM3103246, GSM3271520, GSM3271521, GSM3712571, GSM3712572, GSM3712573, GSM3712574, GSM3712575, GSM3712576, GSM3712577, GSM3712578, GSM3712579, GSM3712580, GSM3712581, GSM3712582, GSM3712583, GSM3712584, GSM3712585, GSM3712586, GSM3732951, GSM3732952, GSM3732953, GSM3732954, GSM3861086, GSM3861087, GSM3861088, GSM3861089, GSM3861090, GSM3861091, GSM3861092, GSM3861093, GSM3861094, GSM3861095, GSM3861096, GSM3861097, GSM3905559, GSM3905560, GSM3905561, GSM3905562, GSM3948522, GSM3948523, GSM3948524, GSM4065463, GSM4544352, GSM4544353, GSM4544354, GSM4544355, GSM4544356, GSM4544357, GSM4544358, GSM4544359, GSM4544360, GSM4544361, GSM4544362, GSM4544363, GSM4544364, GSM4544365, GSM4544366, GSM4544367, GSM4544368, GSM4544369, GSM4544370, GSM4544371, GSM4544387, GSM4544388, GSM4544389, GSM4544390, GSM4544391, GSM4544392, GSM4544393, GSM4544394, GSM4544395, GSM4544396, GSM4544397, GSM4544398, GSM4544399, GSM4544400, GSM4544401, GSM4544423, GSM4544424, GSM4544425, GSM4544429, GSM4544430, GSM4544431, GSM4544432, GSM4544433, GSM4544434, GSM4544435, GSM4544436, GSM4544437, GSM4544787, GSM4544788, GSM4544789, GSM4544790, GSM4544794, GSM4544795, GSM5077387, GSM5150309, GSM5150312, GSM5150315, GSM5150318, GSM5576094, GSM5576095, GSM5576096, GSM5576097, GSM5576098, GSM5576099, GSM6921746, GSM6921747, GSM6921748, GSM6921749, GSM6921750, GSM6921751, GSM6921752, GSM6921753, GSM6921754, GSM6921755, GSM6921756, GSM6921757, GSM7835192
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Series (46)
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GSE41484 |
Multidimensional regulation in transcriptome during sexual development in Neurospora crassa revealed with RNA sequencing |
GSE44673 |
Evidence of a critical role for cellodextrin transporter 2 (CDT-2) in both cellulose and hemicellulose degradation and utilization in Neurospora crassa |
GSE47666 |
Convergent transcription induces dynamic DNA methylation at disiRNA loci |
GSE51091 |
Transcriptional comparison of the filamentous fungus Neurospora crassa growing on three major monosaccharides D-glucose, D-xylose and L-arabinose |
GSE52153 |
Transcriptional profiling of staurosporine-induced cell death in wild type versus Δczt-1 in Neurospora crassa |
GSE52316 |
VIB1, a link between glucose signaling and carbon catabolite repression, is essential for plant cell wall degradation by Neurospora crassa |
GSE53013 |
Transcriptional profiling of staurosporine-induced cell death in Vogel's minimal medium with different concentrations of calcium |
GSE53040 |
Transcriptional profiling of wild type Neurospora crassa cells treated with novel antifungal agents |
GSE53534 |
Genome-wide characterization of light-regulated genes in Neurospora crassa |
GSE61173 |
H3K9me3 ChIP-seq from Neurospora crassa wild type (WT) and dim-3 (severely reduced H3K9me3 levels) strains |
GSE61174 |
Bisulfite-seq from Neurospora crassa a wild type (WT) strain grown in minimum medium, a dim-3 strain grown in minimum medium, and a dim-3 strain grown with supplemented histidine |
GSE61175 |
Neurospora importin alpha compromises H3K9me3 and cytosine methylation levels through inappropriate localization of the heterochromatin machinery |
GSE61949 |
Genome-wide analysis of the endoplasmic reticulum stress response during lignocellulase synthesis in Neurospora crassa |
GSE68514 |
Identification of direct target genes of the Neurospora crassa essential plant biomass deconstruction transcription factors CLR-1, CLR-2 and XLR-1 (RNA-Seq) |
GSE68516 |
Identification of direct target genes of the Neurospora crassa essential plant biomass deconstruction transcription factors CLR-1, CLR-2 and XLR-1 (ChIP-Seq) |
GSE68517 |
Identification of direct target genes of the Neurospora crassa essential plant biomass deconstruction transcription factors CLR-1, CLR-2 and XLR-1 |
GSE68897 |
Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin |
GSE71032 |
Codon usage influences the local rate of translation elongation to regulate co-translational protein folding |
GSE73838 |
The Protein Non-anchored cell wall protein NCW-1 promotes cellulase production through effects on cellobiose uptake in Neurospora crassa |
GSE81129 |
Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa |
GSE88985 |
The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa |
GSE89602 |
Effects of combined heat shock and glucose-deprivation on wild type and os2 mutant cells of Neurospora crassa. |
GSE90611 |
Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa (RNA-seq) |
GSE92848 |
A Fungal Transcription Factor Essential for Starch Degradation Regulates Primary Carbon and Nitrogen Metabolism and Amino Acid Biosynthesis |
GSE95350 |
Transcriptomic changes in response to different carbon sources in Neurospora crassa |
GSE95681 |
Network of nutrient sensing pathways and a conserved kinase cascade integrates osmolarity and carbon sensing in Neurospora crassa |
GSE97157 |
RNA-seq analysis of wild type and upf1 knockout strains in the filamentous fungus Neurospora crassa. |
GSE97717 |
Translation initiation from conserved non-AUG codons provides additional layers of regulation and coding capacity |
GSE98911 |
Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora. |
GSE99245 |
The coding and noncoding transcriptome of Neurospora crassa |
GSE100539 |
Comparative transcriptome of Neurospora crassa strains |
GSE111986 |
A novel conserved transcription factor CLR-4 regulates cellulase genes expression through controlling the intracellular cAMP level in ascomycete fungi |
GSE113321 |
Disruption of gul-1 decreased the culture viscosity and improved protein secretion in the filamentous fungus Neurospora crassa |
GSE117118 |
RNA-seq analysis of wild type strain at DD12 and DD20 |
GSE129410 |
Disruption of serine/threonine protein kinase STK-12 increases cellulase expression in Neurospora crassa |
GSE130155 |
Effect of adat2 silencing in Neurospora crassa on translation kinetics and transcriptome |
GSE132373 |
The pH Signaling Transcription Factor PAC-3 Regulates Metabolic and Developmental Processes in Pathogenic Fungi |
GSE134445 |
The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [ATAC-seq] |
GSE134452 |
The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase |
GSE137018 |
Loss of Lysine-Specific Demethylase 1 (LSD1) Drives Aberrant Heterochromatin Formation in Neurospora crassa |
GSE150256 |
DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus |
GSE150287 |
Effect of cpc-1 deletion in Neurospora crassa on transcriptome under different culture conditions |
GSE168595 |
Codon usage and protein length-dependent feedback from translation elongation to translation initiation and kinetics |
GSE184024 |
Next Generation Sequncimg Facilitates Transcriptional Analysis of ∆mak-2, ∆mak-1 and Wild Type of Neurospora crassa |
GSE222372 |
The transcriptional factor Clr-5 is involved in cellulose degradation through regulation of amino acid metabolism in Neurospora crassa |
GSE245041 |
Ribosome profiling of WT strain in Neurospora crass |
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Supplementary data files not provided |
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