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Platform GPL16193 Query DataSets for GPL16193
Status Public on Jan 30, 2023
Title Agilent-032812 Custom IMB/D. melanogaster array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Drosophila Fly IMB
Arrays of this design have barcodes that begin with 16032812 or 2532812.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 17, 2012
Last update date Jan 30, 2023
Contact name Der-Hwa Huang
E-mail(s) mbdhuang@ccvax.sinica.edu.tw
Organization name Academia Sinica
Department Insititute of Molecular Biology
Lab N420
Street address 128, Sec2, Academia Rd.
City Nankang, Taipei
State/province Taiwan
ZIP/Postal code 11529
Country Taiwan
 
Samples (4) GSM1020782, GSM1020783, GSM1020784, GSM1020785
Series (1)
GSE41640 Oregon-R: Control vs. Hdac1 mutant

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
PROBE_NAME Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID

Data table
ID COL ROW NAME PROBE_NAME CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner GE_BrightCorner pos --pos ctrl
2 266 168 DarkCorner DarkCorner pos --pos ctrl
3 266 166 DarkCorner DarkCorner pos --pos ctrl
4 266 164 DarkCorner DarkCorner pos --pos ctrl
5 266 162 DarkCorner DarkCorner pos --pos ctrl
6 266 160 DarkCorner DarkCorner pos --pos ctrl
7 266 158 DarkCorner DarkCorner pos --pos ctrl
8 266 156 DarkCorner DarkCorner pos --pos ctrl
9 266 154 DarkCorner DarkCorner pos --pos ctrl
10 266 152 DarkCorner DarkCorner pos --pos ctrl
11 266 150 DarkCorner DarkCorner pos --pos ctrl
12 266 148 A_09_P168020 A_09_P168020 FALSE tc|TC241582 chr3R:17159388-17159447 dm|3R93D6 Rep: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase - Mycobacterium gilvum PYR-GCK, partial (4%) [TC241582] CGTGTGTATGCTGAGGGAAATATACAATTCATTTTGGTTTTGTTATCGGTTTTCTAGGTG tc|TC241582
13 266 146 A_09_P215790 A_09_P215790 FALSE NM_137961 NM_137961 37728 levy CG17280 gene product from transcript CG17280-RA FBgn0034877 fly|FBtr0072061|ref|NM_137961|dgc|RH03295|gb|AY070648 chr2R:19436336-19436395 dm|2R59E3 CG17280 [Source:FlyBase;GeneId:FBgn0034877] [FBtr0072061] GO:0004129(cytochrome-c oxidase activity)|GO:0005751(mitochondrial respiratory chain complex IV)|GO:0005792(microsome)|GO:0005811(lipid particle)|GO:0006123(mitochondrial electron transport, cytochrome c to oxygen)|GO:0008340(determination of adult lifespan)|GO:0030234(enzyme regulator activity) TTTGGTAGTGATAGACGTTAATGTAAACTGAACTTTACGCGGAAATACACAGAAAACACA
14 266 144 A_09_P011751 A_09_P011751 FALSE NM_001169354 NM_001169354 43814 bt bent FBgn0005666 fly|FBtr0301340|fly|FBtr0301341|fly|FBtr0089793|ref|NM_001169354 chr4:796618-796677 dm|4102E1 CG32019 [Source:FlyBase;GeneId:FBgn0005666] [FBtr0301340] GO:0004674(protein serine/threonine kinase activity)|GO:0004687(myosin light chain kinase activity)|GO:0005200(structural constituent of cytoskeleton)|GO:0005524(ATP binding)|GO:0005737(cytoplasm)|GO:0006468(protein phosphorylation)|GO:0007498(mesoderm development)|GO:0008307(structural constituent of muscle)|GO:0030018(Z disc)|GO:0045214(sarcomere organization) CTGTATAACTTACGAAACATAAAGACAAATATGTAGTGCGCGGGCTCTATTTGACATAAA
15 266 142 A_09_P080011 A_09_P080011 FALSE NM_143401 NM_143401 43426 Cpsf100 Cleavage and polyadenylation specificity factor 100 FBgn0027873 fly|FBtr0085357|fly|FBtr0085358|ref|NM_143401|ref|NM_170385 chr3R:24862694-24862753 dm|3R98F5 CG1957 [Source:FlyBase;GeneId:FBgn0027873] [FBtr0085357] GO:0003730(mRNA 3'-UTR binding)|GO:0005847(mRNA cleavage and polyadenylation specificity factor complex)|GO:0006378(mRNA polyadenylation)|GO:0006379(mRNA cleavage)|GO:0006398(histone mRNA 3'-end processing)|GO:0016787(hydrolase activity) GAGCAGTATGCGATCGTTTAATATTCAAAATGACGTTTGTGTAAGCCCCTAATGTTTTAC
16 266 140 A_09_P036406 A_09_P036406 FALSE NM_141297 NM_141297 40676 CG2926 CG2926 gene product from transcript CG2926-RA FBgn0037344 fly|FBtr0078752|ref|NM_141297|dgc|MIP13377|gb|BT100063 chr3R:1405928-1405869 dm|3R83B2 CG2926 [Source:FlyBase;GeneId:FBgn0037344] [FBtr0078752] GO:0000381(regulation of alternative nuclear mRNA splicing, via spliceosome)|GO:0005634(nucleus)|GO:0008270(zinc ion binding) CTCCTTAACACAGGACAAGTTAGCAGTGCGGTTAAGTGTGCCGCCTATTTAAAGAAACTG
17 266 138 A_09_P112510 A_09_P112510 FALSE NM_134744 NM_134744 33310 CG14342 CG14342 gene product from transcript CG14342-RB FBgn0031324 fly|FBtr0114498|ref|NM_134744|dgc|IP04288|gb|BT022940 chr2L:1205194-1205253 dm|2L21F2 CG14342 [Source:FlyBase;GeneId:FBgn0031324] [FBtr0114498] GCCAAAGCACTGTCGTAAATATTTAATACCAGTAAAAGTGCAAAGTTCACTTTGGCTAAA
18 266 136 A_09_P014311 A_09_P014311 FALSE NM_168297 NM_168297 317829 CG32026 CG32026 gene product from transcript CG32026-RA FBgn0052026 fly|FBtr0076584|ref|NM_168297|dgc|GH12815|gb|AY069112 chr3L:8831857-8831916 dm|3L66E1 CG32026 [Source:FlyBase;GeneId:FBgn0052026] [FBtr0076584] GO:0000287(magnesium ion binding)|GO:0004449(isocitrate dehydrogenase (NAD+) activity)|GO:0005875(microtubule associated complex)|GO:0005962(mitochondrial isocitrate dehydrogenase complex (NAD+))|GO:0051287(NAD binding)|GO:0055114(oxidation-reduction process) AGATTCTAATGGACACAGATTAAGCATAAGGTAGCCCAATTCAAGCATAGATAAATGGTT
19 266 134 A_09_P178245 A_09_P178245 FALSE tc|TC236423 chr3L:5033200-5033259 dm|3L64C4 Rep: Vitellogenin-like protein - Sarcoptes scabiei type hominis, partial (7%) [TC236423] CCAATACTTGCTTATTTTACTACACCGAGAAAGGTTAGTATTTGCTACATAAGTATTGCC tc|TC236423
20 266 132 A_09_P178475 A_09_P178475 FALSE tc|TC236545 chr2R:19413582-19413641 dm|2R59E2 Rep: CG5360-PA - Drosophila melanogaster (Fruit fly), partial (16%) [TC236545] AGCCAATGTACTTTTGTTAATGATGCATTTGCACCAGCTCGCAAGACGCCATCTTCATCC tc|TC236545

Total number of rows: 45220

Table truncated, full table size 20158 Kbytes.




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