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Platform GPL16287 Query DataSets for GPL16287
Status Public on Nov 16, 2012
Title Exiqon miRCURY LNA microRNA array; 7th generation; batch 208500-2, 208510; lot 35006 - hsa, mmu & rno (miRBase 19.0)
Technology type spotted oligonucleotide
Distribution custom-commercial
Organisms Human alphaherpesvirus 1; Human alphaherpesvirus 2; Cytomegalovirus; Human betaherpesvirus 5; Lymphocryptovirus; Rhadinovirus; JC polyomavirus; Human immunodeficiency virus 1; Murid gammaherpesvirus 4; Merkel cell polyomavirus; Betapolyomavirus hominis; Betapolyomavirus macacae
Manufacturer Exiqon
Manufacture protocol See manufacturer's website:
Catalog number 208500,208501,208502,208510
Support glass
Description The 7th generation miRCURY locked nucleic acid (LNA) oligonucleotide microarray is manufactured by Exiqon (Vedbaek, Denmark). The array has probes printed in quadruplicate as 100 um-diameter spots with 185 um inter-spot distance. Many spots on the array do not have a probe ('empty') and there are some spots that only have the Hy3 fluorescent dye ('Hy3'). Some probes on the array target multiple mature microRNAs. Some probes are species-specific; others are not. Some probes are specific for certain synthetic small RNAs used as control spike-ins in the array-use protocol provided by the array manufacturer. Some probes target non-microRNA RNAs like small nucleolar RNAs. IDs and names of probes on the array, and the miRBase (version 19.0) or proprietary Exiqon miRPlus accession numbers of mature microRNAs targeted by the probes, are provided in the data table for this Platform. The platform information here is based on the .gal array layout file for array batch numbers 208500-2 & 208510 and lot number 35006.
Web link
Contributor(s) Patnaik SK
Submission date Nov 14, 2012
Last update date Nov 20, 2012
Contact name Santosh Kumar Patnaik
Phone 716-8458364
Organization name Roswell Park Comprehensive Cancer Center
Department Thoracic Surgery
Street address Elm and Carlton Streets
City Buffalo
State/province NY
ZIP/Postal code 14263
Country USA
Samples (58) GSM1038008, GSM1038009, GSM1038010, GSM1038011, GSM1038012, GSM1038013 
Series (2)
GSE42333 Effect of cigarette smoke extract, cisplatin, nicotine and/or ionizing radiation on microRNA expression in the NCI-H460 human lung large cell carcinoma cell line
GSE42334 Effect of cigarette smoke extract, cisplatin, nicotine and/or ionizing radiation on mRNA and microRNA expression in the NCI-H460 human lung large cell carcinoma cell line

Data table header descriptions
Name Name of probe typically indicating the RNA sequences targeted by it
miRNA_ID_LIST Identity of the mature microRNA targeted by a probe; if a probe targets multiple mature microRNAs, then the IDs are separated by commas miRBase
Database Database and version whose record IDs are used for the miRNA_ID_LIST value
SPOT_ID Identifier to designate a control probe or an empty feature

Data table
ID Name miRNA_ID_LIST Database SPOT_ID
46202 5S_rRNA 5S_rRNA
146014 bkv-miR-B1-3p/jcv-miR-J1-3p bkv-miR-B1-3p, jcv-miR-J1-3p miRBase 19.0
146185 bkv-miR-B1-5p bkv-miR-B1-5p miRBase 19.0
17415 ebv-miR-BART10-3p ebv-miR-BART10-3p miRBase 19.0
42485 ebv-miR-BART10-5p ebv-miR-BART10-5p miRBase 19.0
42545 ebv-miR-BART11-3p ebv-miR-BART11-3p miRBase 19.0
17283 ebv-miR-BART11-5p ebv-miR-BART11-5p miRBase 19.0
17306 ebv-miR-BART12 ebv-miR-BART12 miRBase 19.0
27537 ebv-miR-BART13-3p ebv-miR-BART13-3p miRBase 19.0
42882 ebv-miR-BART13-5p ebv-miR-BART13-5p miRBase 19.0
17519 ebv-miR-BART1-3p ebv-miR-BART1-3p miRBase 19.0
17623 ebv-miR-BART14-3p ebv-miR-BART14-3p miRBase 19.0
17655 ebv-miR-BART14-5p ebv-miR-BART14-5p miRBase 19.0
42897 ebv-miR-BART15 ebv-miR-BART15 miRBase 19.0
17541 ebv-miR-BART1-5p ebv-miR-BART1-5p miRBase 19.0
17358 ebv-miR-BART16 ebv-miR-BART16 miRBase 19.0
42773 ebv-miR-BART17-3p ebv-miR-BART17-3p miRBase 19.0
46818 ebv-miR-BART17-5p ebv-miR-BART17-5p miRBase 19.0
42466 ebv-miR-BART18-3p ebv-miR-BART18-3p miRBase 19.0
17657 ebv-miR-BART18-5p ebv-miR-BART18-5p miRBase 19.0

Total number of rows: 3534

Table truncated, full table size 191 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource 96.3 Kb (ftp)(http) GAL

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