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Status
Public on May 20, 2014
Title
IRHS_ARyANE_v1 [110411_Mdom_JPR_exp]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Malus domestica Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/
Description
A dataset of 57,386 quality-filtered predicted unigenes were submitted for probe design and production of the high-density microarray. Two oligoprobes were selected for each sequence, one on the sense strand and one on the anti-sense strand, based on highest hybridization specicifity. The IRHS_ARyANE_v1.0 chip contains a total of 126,022 probes for sense and antisense predicted coding genes and microRNA genes. Annotation is based on the v1.0 apple genome version, MalDomGD1.0.
Submission date
Dec 12, 2012
Last update date
Jan 07, 2015
Contact name
Jean-Marc Celton
E-mail(s)
jean-marc.celton@angers.inra.fr Organization name
INRA-IRHS
Street address
42 rue Georges Morel
City
Beaucouzé
ZIP/Postal code
49071
Country
France
Samples (635)
GSM1052621 , GSM1052622 , GSM1052623 , GSM1052624 , GSM1052625 , GSM1052626
GSM1052627 ,
GSM1052628 ,
GSM1052629 ,
GSM1052630 ,
GSM1052631 ,
GSM1052632 ,
GSM1052633 ,
GSM1052634 ,
GSM1052635 ,
GSM1052636 ,
GSM1052637 ,
GSM1052638 ,
GSM1052639 ,
GSM1052640 ,
GSM1052641 ,
GSM1052642 ,
GSM1052643 ,
GSM1052644 ,
GSM1052645 ,
GSM1052646 ,
GSM1052647 ,
GSM1052648 ,
GSM1052649 ,
GSM1052650 ,
GSM1052651 ,
GSM1052652 ,
GSM1251572 ,
GSM1251573 ,
GSM1251574 ,
GSM1251575 ,
GSM1251576 ,
GSM1251577 ,
GSM1251578 ,
GSM1251579 ,
GSM1251580 ,
GSM1251581 ,
GSM1251582 ,
GSM1251583 ,
GSM1251584 ,
GSM1251585 ,
GSM1251586 ,
GSM1251587 ,
GSM1251588 ,
GSM1251589 ,
GSM1251590 ,
GSM1251591 ,
GSM1251592 ,
GSM1251593 ,
GSM1251594 ,
GSM1251595 ,
GSM1251596 ,
GSM1251597 ,
GSM1251598 ,
GSM1251599 ,
GSM1251600 ,
GSM1251601 ,
GSM1251602 ,
GSM1251603 ,
GSM1251604 ,
GSM1251605 ,
GSM1251606 ,
GSM1251607 ,
GSM1251608 ,
GSM1251609 ,
GSM1251610 ,
GSM1251611 ,
GSM1444491 ,
GSM1444492 ,
GSM1444493 ,
GSM1444494 ,
GSM1444495 ,
GSM1444496 ,
GSM1444497 ,
GSM1444498 ,
GSM1444499 ,
GSM1444500 ,
GSM1444501 ,
GSM1444502 ,
GSM1444503 ,
GSM1444504 ,
GSM1444505 ,
GSM1444506 ,
GSM1444507 ,
GSM1444508 ,
GSM1444509 ,
GSM1444510 ,
GSM1444511 ,
GSM1444512 ,
GSM1444513 ,
GSM1444514 ,
GSM1462584 ,
GSM1462585 ,
GSM1462586 ,
GSM1462587 ,
GSM1462588 ,
GSM1462589 ,
GSM1462590 ,
GSM1462591 ,
GSM1462592 ,
GSM1462593 ,
GSM1462594 ,
GSM1462595 ,
GSM1462596 ,
GSM1462597 ,
GSM1462598 ,
GSM1462599 ,
GSM1462600 ,
GSM1462601 ,
GSM1462602 ,
GSM1462603 ,
GSM1462604 ,
GSM1462605 ,
GSM1462606 ,
GSM1462607 ,
GSM1462608 ,
GSM1462609 ,
GSM1462610 ,
GSM1462611 ,
GSM1462612 ,
GSM1462613 ,
GSM1462614 ,
GSM1462615 ,
GSM1462616 ,
GSM1462617 ,
GSM1462618 ,
GSM1462619 ,
GSM1462620 ,
GSM1462621 ,
GSM1462622 ,
GSM1462623 ,
GSM1462624 ,
GSM1462625 ,
GSM1462626 ,
GSM1462627 ,
GSM1462628 ,
GSM1462629 ,
GSM1462630 ,
GSM1462631 ,
GSM1462632 ,
GSM1462633 ,
GSM1462634 ,
GSM1462635 ,
GSM1462636 ,
GSM1462637 ,
GSM1462638 ,
GSM1462639 ,
GSM1462640 ,
GSM1462641 ,
GSM1462642 ,
GSM1462643 ,
GSM1563946 ,
GSM1563947 ,
GSM1563948 ,
GSM1563949 ,
GSM1563950 ,
GSM1563951 ,
GSM1563952 ,
GSM1563953 ,
GSM1563954 ,
GSM1563955 ,
GSM1563956 ,
GSM1563957 ,
GSM1563958 ,
GSM1563959 ,
GSM1563960 ,
GSM1563961 ,
GSM1563962 ,
GSM1563963 ,
GSM1563964 ,
GSM1563965 ,
GSM1563966 ,
GSM1563967 ,
GSM1563968 ,
GSM1563969 ,
GSM1563970 ,
GSM1563971 ,
GSM1563972 ,
GSM1563973 ,
GSM1563974 ,
GSM1563975 ,
GSM1563976 ,
GSM1563977 ,
GSM1563978 ,
GSM1563979 ,
GSM1563980 ,
GSM1563981 ,
GSM1563982 ,
GSM1563983 ,
GSM1563984 ,
GSM1563985 ,
GSM1563986 ,
GSM1563987 ,
GSM1563988 ,
GSM1563989 ,
GSM1563990 ,
GSM1563991 ,
GSM1563992 ,
GSM1563993 ,
GSM1563994 ,
GSM1563995 ,
GSM1563996 ,
GSM1563997 ,
GSM1563998 ,
GSM1563999 ,
GSM1564000 ,
GSM1564001 ,
GSM1564002 ,
GSM1564003 ,
GSM1564004 ,
GSM1564005 ,
GSM1564006 ,
GSM1564007 ,
GSM1564008 ,
GSM1564009 ,
GSM1564010 ,
GSM1564011 ,
GSM1564012 ,
GSM1564013 ,
GSM1564014 ,
GSM1564015 ,
GSM1564016 ,
GSM1564017 ,
GSM1564018 ,
GSM1564019 ,
GSM1564020 ,
GSM1564021 ,
GSM1564022 ,
GSM1564023 ,
GSM1564024 ,
GSM1564025 ,
GSM1564026 ,
GSM1564027 ,
GSM1564028 ,
GSM1564029 ,
GSM1564030 ,
GSM1564031 ,
GSM1564032 ,
GSM1564033 ,
GSM1564034 ,
GSM1564035 ,
GSM1564036 ,
GSM1564037 ,
GSM1564038 ,
GSM1564039 ,
GSM1564040 ,
GSM1564041 ,
GSM1564042 ,
GSM1564043 ,
GSM1564044 ,
GSM1564045 ,
GSM1564046 ,
GSM1564047 ,
GSM1564048 ,
GSM1564049 ,
GSM1564050 ,
GSM1564051 ,
GSM1564052 ,
GSM1564053 ,
GSM1564054 ,
GSM1564055 ,
GSM1564056 ,
GSM1564057 ,
GSM1564058 ,
GSM1564059 ,
GSM1564060 ,
GSM1564061 ,
GSM1564062 ,
GSM1564063 ,
GSM1564064 ,
GSM1564065 ,
GSM1564066 ,
GSM1564067 ,
GSM1564068 ,
GSM1564069 ,
GSM1564070 ,
GSM1564071 ,
GSM1564072 ,
GSM1564073 ,
GSM1564074 ,
GSM1564075 ,
GSM1564076 ,
GSM1564077 ,
GSM1564078 ,
GSM1564079 ,
GSM1564080 ,
GSM1564081 ,
GSM1564082 ,
GSM1564083 ,
GSM1564084 ,
GSM1564085 ,
GSM1564086 ,
GSM1564087 ,
GSM1564088 ,
GSM1564089 ,
GSM1564090 ,
GSM1564091 ,
GSM1564092 ,
GSM1564093 ,
GSM1564094 ,
GSM1564095 ,
GSM1564096 ,
GSM1564097 ,
GSM1576173 ,
GSM1576174 ,
GSM1576175 ,
GSM1577793 ,
GSM1577794 ,
GSM1577795 ,
GSM1577796 ,
GSM1577797 ,
GSM1577798 ,
GSM1577799 ,
GSM1577800 ,
GSM1577801 ,
GSM1577802 ,
GSM1577803 ,
GSM1577804 ,
GSM1577805 ,
GSM1577806 ,
GSM1577807 ,
GSM1577808 ,
GSM1577809 ,
GSM1577810 ,
GSM1577811 ,
GSM1577812 ,
GSM1577813 ,
GSM1577814 ,
GSM1577815 ,
GSM1577816 ,
GSM1577817 ,
GSM1577818 ,
GSM1577819 ,
GSM1577820 ,
GSM1577821 ,
GSM1577822 ,
GSM1577823 ,
GSM1577824 ,
GSM2666648 ,
GSM2666649 ,
GSM2666650 ,
GSM2666651 ,
GSM2666652 ,
GSM2666653 ,
GSM2666654 ,
GSM2666655 ,
GSM2666656 ,
GSM2666657 ,
GSM2666658 ,
GSM2666659 ,
GSM2666660 ,
GSM2666661 ,
GSM2666662 ,
GSM2666663 ,
GSM2666664 ,
GSM2666665 ,
GSM2666666 ,
GSM2666667 ,
GSM2666668 ,
GSM2666669 ,
GSM2666670 ,
GSM2666671 ,
GSM2666672 ,
GSM2666673 ,
GSM2666674 ,
GSM2666675 ,
GSM2666676 ,
GSM2666677 ,
GSM2666678 ,
GSM2666679 ,
GSM2666680 ,
GSM2666681 ,
GSM2666682 ,
GSM2666683 ,
GSM2666684 ,
GSM2666685 ,
GSM2666686 ,
GSM2666687 ,
GSM2666688 ,
GSM2666689 ,
GSM2666690 ,
GSM2666691 ,
GSM2666692 ,
GSM2666693 ,
GSM2666694 ,
GSM2666695 ,
GSM2666696 ,
GSM2666697 ,
GSM2666698 ,
GSM2666699 ,
GSM2666700 ,
GSM2666701 ,
GSM2666702 ,
GSM2666703 ,
GSM2666704 ,
GSM2666705 ,
GSM2666706 ,
GSM2666707 ,
GSM2666708 ,
GSM2666709 ,
GSM2666710 ,
GSM2666711 ,
GSM2666712 ,
GSM2666713 ,
GSM2666714 ,
GSM2666715 ,
GSM2666716 ,
GSM2666717 ,
GSM2666718 ,
GSM2666719 ,
GSM2713722 ,
GSM2713723 ,
GSM2713724 ,
GSM2713725 ,
GSM2713726 ,
GSM2713727 ,
GSM2713728 ,
GSM2713729 ,
GSM2713730 ,
GSM2713731 ,
GSM2713732 ,
GSM2713733 ,
GSM2713734 ,
GSM2713735 ,
GSM2713736 ,
GSM2713737 ,
GSM2713738 ,
GSM2713739 ,
GSM2713740 ,
GSM2713741 ,
GSM2713742 ,
GSM2713743 ,
GSM2713744 ,
GSM2713745 ,
GSM2713746 ,
GSM2713747 ,
GSM2713748 ,
GSM2713749 ,
GSM2713750 ,
GSM2713751 ,
GSM2713752 ,
GSM2713753 ,
GSM2713754 ,
GSM2713755 ,
GSM2713756 ,
GSM2713757 ,
GSM2713758 ,
GSM2713759 ,
GSM2713760 ,
GSM2713761 ,
GSM2713762 ,
GSM2713763 ,
GSM2713764 ,
GSM2713765 ,
GSM2713766 ,
GSM2713767 ,
GSM2713768 ,
GSM2713769 ,
GSM2713770 ,
GSM2713771 ,
GSM2713772 ,
GSM2713773 ,
GSM2713774 ,
GSM2713775 ,
GSM2713776 ,
GSM2713777 ,
GSM2713778 ,
GSM2713779 ,
GSM2713780 ,
GSM2713781 ,
GSM2713782 ,
GSM2713783 ,
GSM2713784 ,
GSM2713785 ,
GSM2713786 ,
GSM2713787 ,
GSM2713788 ,
GSM2713789 ,
GSM2713790 ,
GSM2713791 ,
GSM2713792 ,
GSM2713793 ,
GSM2713794 ,
GSM2713795 ,
GSM2713796 ,
GSM2713797 ,
GSM2713798 ,
GSM2713799 ,
GSM2713800 ,
GSM2713801 ,
GSM2713802 ,
GSM2713803 ,
GSM2713804 ,
GSM2713805 ,
GSM2713806 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (12)
GSE42873 Apple Atlas expression array
GSE51727 Transcriptional profiling of apple (Malus x domestica Borkh) pedicels abscission zone development
GSE51728 Transcriptional profiling of apple (Malus x domestica Borkh) pedicels displaying abnormal additional amphivasal vascular bundles in the pith
GSE51729 Apple pedicel vascular development array
GSE59728 1-MCP effect on the transcriptional profiling of apple flesh (Malus x domestica Borkh, Gala variety) maintained in cold storage
GSE59947 Large scale analysis of apple mealiness within IM apple progeny
GSE64079 Large scale analysis of apple development within HIVW apple progeny
GSE64646 Transcriptional Profiling of Apple (Malus x domestica Borkh) Floral Induction in Shoot Apical Meristems
GSE64717 Microarray analysis of apple buds during dormancy
GSE99966 Global gene expression analysis of resistant and susceptible apple cultivars challenged with Penicillium expansum
GSE101716 Large scale analysis of fruit evolution during cold storage within different apple varieties and HIVW progeny
GSE175422 Large scale analysis of leaf gene expression upon infection of susceptible or resistant apple varietes with different strains of Erwinia amylovora
Data table header descriptions ID SEQ_ID: Annotation based on the v1.0 apple genome version
SELECTION_CRITERIA Nimblegen Quality control
SEQUENCE SPOT_ID PROBE_ID
Data table ID SELECTION_CRITERIA SEQUENCE SPOT_ID Md_miR397b
rank:01;score:274;uniq:00;count:37;freq:05;rules:1;tm:75.6;cn:140
TGCTTCTGAATCTTCATTAGGACATCGAAACATTTCATCAACGCTGCACCCAATTATGTT
AryANE_v1_00000001
Md_miR168b
rank:01;score:096;uniq:02;count:77;freq:04;rules:1;tm:85.2;cn:145
ATACGGAGCAGAGGTCGCTTGGTGCAGGTCGGGAACCGATGGTCTAGCTGAGCCACCACC
AryANE_v1_00000002
Md_miR319f
rank:05;score:-18;uniq:00;count:39;freq:04;rules:1;tm:77.0;cn:141
ATTGCAGAAATGGGAGTTCCATGCAACCCAAAACAGCGACTATGAATGAAATAGTAGCTC
AryANE_v1_00000003
Md_miR171b
rank:01;score:271;uniq:00;count:37;freq:05;rules:1;tm:72.9;cn:141
ATCTATCCTTTCAACTCAACATCATATATTCATGGTATGTTGTTGATCTAAATTATCCCC
AryANE_v1_00000004
Md_miR167c
rank:07;score:172;uniq:00;count:37;freq:05;rules:0;tm:78.3;cn:143
GCTTCACCTGTTGATGAGGATCACGAAAAAGAACACTCTCCCACTATCACAATTCTAGCC
AryANE_v1_00000005
Md_miR390c
rank:04;score:017;uniq:08;count:74;freq:09;rules:0;tm:79.0;cn:147
GTTTAACCACGTATCGCGCTATCCATCTTGGGCTTCATGGCTTCTTCTTACTCTCTCTTG
AryANE_v1_00000006
Md_miR390d
rank:04;score:017;uniq:08;count:74;freq:09;rules:0;tm:79.0;cn:147
GTTTAACCACGTATCGCGCTATCCATCTTGGGCTTCATGGCTTCTTCTTACTCTCTCTTG
AryANE_v1_00000007
Md_miR399g
rank:01;score:299;uniq:00;count:37;freq:02;rules:1;tm:78.3;cn:138
CGGCAGAGATGCAGTGCATACGAATACTACAAGGTATAATAGCCAAGGTTGACTATCCGA
AryANE_v1_00000008
Md_miR390a
rank:01;score:232;uniq:01;count:37;freq:02;rules:0;tm:74.9;cn:147
GGATAGCGCCAGATGAATTAACCAAGATTCTAACAATTAAGCGTTTATTTGGTCATCATC
AryANE_v1_00000009
Md_miR160k
rank:01;score:302;uniq:00;count:37;freq:02;rules:1;tm:79.0;cn:136
TTAGCTGGCATTAAGGGAGTCATGCATGTCTAGCTGTTAGATTGACCGACCGATCAATCC
AryANE_v1_00000010
Md_miR169f
rank:01;score:067;uniq:00;count:44;freq:06;rules:1;tm:75.6;cn:148
TTATAACTTCTCTCACATATTGTACTTCTCTTCTCGCAACAAACCATCGGTTCCTACTGA
AryANE_v1_00000011
Md_miR399f
rank:01;score:268;uniq:05;count:37;freq:03;rules:0;tm:76.3;cn:148
TCCATGTTTCTGCCACAAGGTATGCTTTCCATACTAGTCTTTTGTCTTACATACGCTAAC
AryANE_v1_00000012
Md_miR166e
rank:01;score:363;uniq:10;count:37;freq:02;rules:1;tm:76.3;cn:148
TCATGCAAGGATGAGTACCGTTAACTAGTCAATCTATGTGGGAAAATACGTAGCGATTAG
AryANE_v1_00000013
Md_miR159e
rank:02;score:296;uniq:02;count:37;freq:02;rules:1;tm:78.3;cn:146
CTATTTATCCTATGTTAGATCAGATCGGATCGACCGAAGGGATGATAGGGTTGTGGCTTG
AryANE_v1_00000014
Md_miR160j
rank:01;score:311;uniq:04;count:37;freq:03;rules:1;tm:79.0;cn:145
ATCTGTTTCTCGATTGGCTATTGCGGGTGGCGTATGAGGAGTCAAGCATAGTTTCTCCTT
AryANE_v1_00000015
Md_miR164e
rank:01;score:134;uniq:00;count:37;freq:09;rules:0;tm:77.0;cn:147
GCACACGAAGAAGAAGGAAGTATGTTAAGTTCACTCACTCTCAAGGTAACAACATCGATC
AryANE_v1_00000016
Md_miR157d
rank:01;score:336;uniq:06;count:37;freq:01;rules:1;tm:77.7;cn:148
TGTCTTCTATCTCTCGTGTCTACCTACTGAACGTTACCTGATACGTAGAGTGAGGAAACA
AryANE_v1_00000017
Md_miR403c
rank:01;score:288;uniq:01;count:37;freq:02;rules:1;tm:79.7;cn:143
GACAGACTACCGATTAGGTTGCCACAATCTAAGTGCGTGTTTGAGCACTAGACAGAGGAG
AryANE_v1_00000018
Md_miR169o
rank:01;score:305;uniq:03;count:37;freq:03;rules:1;tm:78.3;cn:136
TGAATGGCATTGTCGTATGTCTAAAATTCATGTTTGGCTGCCAGGCAGTCTCCTTGGCTA
AryANE_v1_00000019
Md_miR157c
rank:01;score:268;uniq:00;count:37;freq:04;rules:1;tm:77.7;cn:123
GACAGAAGATAGAGAGCACAGATGGATGACTTGCAATTGACTATGCATCTCACTCCTTTG
AryANE_v1_00000020
126022 19822 Kbytes .Supplementary file Size Download File type/resource GPL16374_110411_Mdom_JPR_exp.ndf.gz
8.3 Mb
(ftp) (http) NDF
GPL16374_110411_Mdom_JPR_exp_HX12.ncd.gz
314 b
(ftp) (http) NCD
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