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Platform GPL16533 Query DataSets for GPL16533
Status Public on Apr 19, 2013
Title NimbleGen Mouse 2.1M tiling (MM9_Deluxe_Prom_ChIP_HX1)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen Systems Inc.
Manufacture protocol http://www.nimblegen.com/products/lit/05985200001_NG_ChIP_DNAmethyl_Broch_Sept2011.pdf
Catalog number 06532993001
 
Description Promoter tiling array using NimbleGen platform. Mouse MM9 build. Probe length 50-75bp isothermal. -8kb/+3kb around promoters.
 
Web link http://www.nimblegen.com/support/dna-microarray-support.html
Submission date Jan 22, 2013
Last update date Mar 04, 2013
Contact name Jorja Henikoff
E-mail(s) jorja@fhcrc.org
Phone 206-667-4850
Organization name Fred Hutchinson Cancer Research Center
Department Basic Sciences
Lab Henikoff
Street address 1100 Fairview AV N, A1-162
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Samples (28) GSM1070343, GSM1070344, GSM1070345, GSM1070346, GSM1070347, GSM1070349 
Series (3)
GSE43753 Doxorubicin enhances nucleosome turnover around promoters
GSE52347 The nucleosomal barrier to promoter escape by RNA Polymerase II is overcome by the chromatin remodeler Chd1 [NimbleGen]
GSE52349 The nucleosomal barrier to promoter escape by RNA Polymerase II is overcome by the chromatin remodeler Chd1

Data table header descriptions
ID NimbleGen PROBE_ID, FS=forward strand, RS=reverse strand.
RANGE_START Start position of the probe within chromosome
RANGE_END End position of the probe within chromosome
SEQUENCE DNA sequence synthesized on the array
RANGE_GB GenBank accession number

Data table
ID RANGE_START RANGE_END SEQUENCE RANGE_GB
CHR01FS003521489 3521489 3521488 AATATCCTATAAGATTGGCACAGAAAGCACACTTGAGTTAGTGAGGACTTCAGG NC_000067.5
CHR01FS003521569 3521569 3521568 TGTGCAGGTGGACACCTAGGATTGCATGATAGCTTGAAAGGATTAAATCTC NC_000067.5
CHR01FS003521689 3521689 3521688 GTGGTGGCCTATTACCTCGCGGCACCGCAGCCTGGCACCCACCCGGCTGG NC_000067.5
CHR01FS003521789 3521789 3521788 GGCAGCGGGAGAGTGTCTGAGCTCCCCGCGGGGAGGCTGGACAGCCCTGG NC_000067.5
CHR01FS003521874 3521874 3521873 TCATGGCATCGTTGGCAGACCGGGTCTGGGGCAACAGGCGCATCGCCGCC NC_000067.5
CHR01FS003521969 3521969 3521968 AACAAATGGATCTATGTACACCACGCTTCCCCAAGATGAGCCTGACACTG NC_000067.5
CHR01FS003522069 3522069 3522068 CATCTTTGCCCTTAAAAATCTGCCGCTCTCCAAGCTCCTCCTCCTGGCCC NC_000067.5
CHR01FS003658583 3658583 3658582 CAGCCAGCAACACAATTGTCTGACAGACTGTGGTCTCCTTTATATGTTCA NC_000067.5
CHR01FS003658683 3658683 3658682 GACCCAGTGGATACTGTCTCATTGTAGTATTTTTCTCCACGTTTTCCTACTTCT NC_000067.5
CHR01FS003658798 3658798 3658797 GATTCAAAAGTCTAATAAATGTTACAATTAAAATGACTTCTTCAGTACACTGAGTT NC_000067.5
CHR01FS003658883 3658883 3658882 ATCTGTAGGAGGCACACACAGGTGTTTAGTGACAATAACTAATAAGCACTTATATTGCTGAT NC_000067.5
CHR01FS003658993 3658993 3658992 CAAGTTACCAAATAGGTTGATAAGTTTTTGGTACCACACTGCTAGATTAAAAC NC_000067.5
CHR01FS003659103 3659103 3659102 GTTCTTCCTCATAATTAAAGAATACCCAACTTGGACCTTCCAATACTTTTCTG NC_000067.5
CHR01FS003659198 3659198 3659197 TCTCCCAGGGTCTGAAATATATATGTTTCCACATCAATTTGTCTAACAGTACACCATGC NC_000067.5
CHR01FS003659283 3659283 3659282 AATACGTTCTAAGGCAGGAGGTCTAGGGCCATGCTCACCCTGCTTTACAG NC_000067.5
CHR01FS003659383 3659383 3659382 CAAGGACGCTGACTTCTGCCAGAAAGAGAAGTGTGTGAATCTATGTTACAAAT NC_000067.5
CHR01FS003659528 3659528 3659527 CAAAAAGCATACAGGTGAAAGTACAGAGTACATGCCAGTATCAGCCCACTT NC_000067.5
CHR01FS003659613 3659613 3659612 ACTAAATTGCTTTAAAGCCAAGGAGTCTCTAGGGTAACAGCCTCTATATTTTTC NC_000067.5
CHR01FS003659728 3659728 3659727 AAAAGAACAGATTTCTGAGCATATTGTCCCACCACATTCCTACATCTGTGCAGTAATG NC_000067.5
CHR01FS003659828 3659828 3659827 ACTTCAGTGTATAAGCAAAGTGACAACTATGTAAAGAGACTTGGTGGATCAAGTGAGAAG NC_000067.5

Total number of rows: 2082810

Table truncated, full table size 206432 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16533_100718_MM9_Deluxe_Prom_ChIP_HX1.ncd.gz 278 b (ftp)(http) NCD
GPL16533_100718_MM9_Deluxe_Prom_ChIP_HX1.ndf.gz 142.4 Mb (ftp)(http) NDF
GPL16533_100718_MM9_Deluxe_Prom_ChIP_HX1.pos.gz 17.0 Mb (ftp)(http) POS
GPL16533_100718_MM9_Deluxe_Prom_ChIP_HX1.txt.gz 54.6 Mb (ftp)(http) TXT
GPL16533_readme.txt 301 b (ftp)(http) TXT

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