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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 19, 2013 |
| Title |
NimbleGen Mouse 2.1M tiling (MM9_Deluxe_Prom_ChIP_HX1) |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
NimbleGen Systems Inc. |
| Manufacture protocol |
http://www.nimblegen.com/products/lit/05985200001_NG_ChIP_DNAmethyl_Broch_Sept2011.pdf
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| Catalog number |
06532993001 |
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| Description |
Promoter tiling array using NimbleGen platform. Mouse MM9 build. Probe length 50-75bp isothermal. -8kb/+3kb around promoters.
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| Web link |
http://www.nimblegen.com/support/dna-microarray-support.html
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| Submission date |
Jan 22, 2013 |
| Last update date |
Mar 04, 2013 |
| Contact name |
Jorja Henikoff |
| E-mail(s) |
jorja@fhcrc.org
|
| Phone |
206-667-4850
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| Organization name |
Fred Hutchinson Cancer Research Center
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| Department |
Basic Sciences
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| Lab |
Henikoff
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| Street address |
1100 Fairview AV N, A1-162
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| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109-1024 |
| Country |
USA |
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| Samples (28)
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GSM1070343, GSM1070344, GSM1070345, GSM1070346, GSM1070347, GSM1070349
GSM1070350, GSM1070351, GSM1070352, GSM1070353, GSM1070354, GSM1070356, GSM1070361, GSM1070362, GSM1092547, GSM1092548, GSM1092549, GSM1092550, GSM1092551, GSM1092552, GSM1092554, GSM1092555, GSM1092568, GSM1092569, GSM1263785, GSM1263786, GSM1263787, GSM1263788
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| Series (3) |
| GSE43753 |
Doxorubicin enhances nucleosome turnover around promoters |
| GSE52347 |
The nucleosomal barrier to promoter escape by RNA Polymerase II is overcome by the chromatin remodeler Chd1 [NimbleGen] |
| GSE52349 |
The nucleosomal barrier to promoter escape by RNA Polymerase II is overcome by the chromatin remodeler Chd1 |
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| Data table header descriptions |
| ID |
NimbleGen PROBE_ID, FS=forward strand, RS=reverse strand. |
| RANGE_START |
Start position of the probe within chromosome |
| RANGE_END |
End position of the probe within chromosome |
| SEQUENCE |
DNA sequence synthesized on the array |
| RANGE_GB |
GenBank accession number |
| Data table |
| ID |
RANGE_START |
RANGE_END |
SEQUENCE |
RANGE_GB |
| CHR01FS003521489 |
3521489 |
3521488 |
AATATCCTATAAGATTGGCACAGAAAGCACACTTGAGTTAGTGAGGACTTCAGG |
NC_000067.5 |
| CHR01FS003521569 |
3521569 |
3521568 |
TGTGCAGGTGGACACCTAGGATTGCATGATAGCTTGAAAGGATTAAATCTC |
NC_000067.5 |
| CHR01FS003521689 |
3521689 |
3521688 |
GTGGTGGCCTATTACCTCGCGGCACCGCAGCCTGGCACCCACCCGGCTGG |
NC_000067.5 |
| CHR01FS003521789 |
3521789 |
3521788 |
GGCAGCGGGAGAGTGTCTGAGCTCCCCGCGGGGAGGCTGGACAGCCCTGG |
NC_000067.5 |
| CHR01FS003521874 |
3521874 |
3521873 |
TCATGGCATCGTTGGCAGACCGGGTCTGGGGCAACAGGCGCATCGCCGCC |
NC_000067.5 |
| CHR01FS003521969 |
3521969 |
3521968 |
AACAAATGGATCTATGTACACCACGCTTCCCCAAGATGAGCCTGACACTG |
NC_000067.5 |
| CHR01FS003522069 |
3522069 |
3522068 |
CATCTTTGCCCTTAAAAATCTGCCGCTCTCCAAGCTCCTCCTCCTGGCCC |
NC_000067.5 |
| CHR01FS003658583 |
3658583 |
3658582 |
CAGCCAGCAACACAATTGTCTGACAGACTGTGGTCTCCTTTATATGTTCA |
NC_000067.5 |
| CHR01FS003658683 |
3658683 |
3658682 |
GACCCAGTGGATACTGTCTCATTGTAGTATTTTTCTCCACGTTTTCCTACTTCT |
NC_000067.5 |
| CHR01FS003658798 |
3658798 |
3658797 |
GATTCAAAAGTCTAATAAATGTTACAATTAAAATGACTTCTTCAGTACACTGAGTT |
NC_000067.5 |
| CHR01FS003658883 |
3658883 |
3658882 |
ATCTGTAGGAGGCACACACAGGTGTTTAGTGACAATAACTAATAAGCACTTATATTGCTGAT |
NC_000067.5 |
| CHR01FS003658993 |
3658993 |
3658992 |
CAAGTTACCAAATAGGTTGATAAGTTTTTGGTACCACACTGCTAGATTAAAAC |
NC_000067.5 |
| CHR01FS003659103 |
3659103 |
3659102 |
GTTCTTCCTCATAATTAAAGAATACCCAACTTGGACCTTCCAATACTTTTCTG |
NC_000067.5 |
| CHR01FS003659198 |
3659198 |
3659197 |
TCTCCCAGGGTCTGAAATATATATGTTTCCACATCAATTTGTCTAACAGTACACCATGC |
NC_000067.5 |
| CHR01FS003659283 |
3659283 |
3659282 |
AATACGTTCTAAGGCAGGAGGTCTAGGGCCATGCTCACCCTGCTTTACAG |
NC_000067.5 |
| CHR01FS003659383 |
3659383 |
3659382 |
CAAGGACGCTGACTTCTGCCAGAAAGAGAAGTGTGTGAATCTATGTTACAAAT |
NC_000067.5 |
| CHR01FS003659528 |
3659528 |
3659527 |
CAAAAAGCATACAGGTGAAAGTACAGAGTACATGCCAGTATCAGCCCACTT |
NC_000067.5 |
| CHR01FS003659613 |
3659613 |
3659612 |
ACTAAATTGCTTTAAAGCCAAGGAGTCTCTAGGGTAACAGCCTCTATATTTTTC |
NC_000067.5 |
| CHR01FS003659728 |
3659728 |
3659727 |
AAAAGAACAGATTTCTGAGCATATTGTCCCACCACATTCCTACATCTGTGCAGTAATG |
NC_000067.5 |
| CHR01FS003659828 |
3659828 |
3659827 |
ACTTCAGTGTATAAGCAAAGTGACAACTATGTAAAGAGACTTGGTGGATCAAGTGAGAAG |
NC_000067.5 |
Total number of rows: 2082810
Table truncated, full table size 206432 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL16533_100718_MM9_Deluxe_Prom_ChIP_HX1.ncd.gz |
278 b |
(ftp)(http) |
NCD |
| GPL16533_100718_MM9_Deluxe_Prom_ChIP_HX1.ndf.gz |
142.4 Mb |
(ftp)(http) |
NDF |
| GPL16533_100718_MM9_Deluxe_Prom_ChIP_HX1.pos.gz |
17.0 Mb |
(ftp)(http) |
POS |
| GPL16533_100718_MM9_Deluxe_Prom_ChIP_HX1.txt.gz |
54.6 Mb |
(ftp)(http) |
TXT |
| GPL16533_readme.txt |
301 b |
(ftp)(http) |
TXT |
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