NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL16729 Query DataSets for GPL16729
Status Public on Nov 14, 2013
Title Agilent-038224 Acinetobacter baumannii v1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Acinetobacter baumannii ATCC 17978
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16038224 or 2538224.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Feb 27, 2013
Last update date Sep 18, 2015
Contact name JESUS ARANDA
Organization name CHUAC
Street address AS XUBIAS
City A CORUÑA
ZIP/Postal code 15006
Country Spain
 
Samples (22) GSM1089807, GSM1089808, GSM1089809, GSM1888401, GSM1888402, GSM1888403 
Series (3)
GSE44735 Characterization of A. baumannii Mitomycin C (MMC) response
GSE73193 Characterization of two Acinetobacter baumannii rifampin-spontaneous mutants lacking twitching motility
GSE85264 Bile salts in Acinetobacter baumannii clinical strains with lack of AdeABC efflux pump

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_2514_PI427486876 CUST_2514_PI427486876 FALSE lcl|NC_009085.1_gene_2534 unmapped GTAAAGCCAATGGTGAGAATGTCGCGAGTGGACAAAAAACTTTAAATGAGGTCATGGCTA
5 96 156 CUST_728_PI427486876 CUST_728_PI427486876 FALSE lcl|NC_009085.1_gene_740 unmapped CTTTAATACAGATGCACTCAATAGCCTGAGAAGCGGCAAACCTATTTTGGAACCTGATGC
6 96 154 CUST_2154_PI427486876 CUST_2154_PI427486876 FALSE lcl|NC_009085.1_gene_2171 unmapped TGCTGACACGAGCAAAGCTGAAACTCAAAAACAAATTCGAGTATGTGCAAAAAAACAGCA
7 96 152 CUST_2794_PI427486876 CUST_2794_PI427486876 FALSE lcl|NC_009085.1_gene_2819 unmapped GTGTGTTAACTGTGAAACCACATTAGAAAACTTAAAACTCGGTCAGCGTGCCAGCGTATT
8 96 150 CUST_1622_PI427486876 CUST_1622_PI427486876 FALSE lcl|NC_009085.1_gene_1637 unmapped TATTGGCATGTTGCTCATTCCACTATGGATACAGCACCTTCTAAAGTTAAGCCCGCTTTG
9 96 148 CUST_2674_PI427486876 CUST_2674_PI427486876 FALSE lcl|NC_009085.1_gene_2695 unmapped TGTTGATGCAATGTTCTTAAACGAAGAGGCTTGGTTTGCCCCTGAGTATGAAGAACAATT
10 96 146 CUST_1030_PI427486876 CUST_1030_PI427486876 FALSE lcl|NC_009085.1_gene_1045 unmapped CTTGCTGGATTGCCGGAAGCTTTAGCAGGCATTTTCTTTGTGGGAAATCTTTTTATTGAA
11 96 144 CUST_903_PI427486876 CUST_903_PI427486876 FALSE lcl|NC_009085.1_gene_918 unmapped TTTTGGTAATAGCGCATTGCACAGTGTTATTTTTGAAGGCAACCAGACTTTAGCTGCAAC
12 96 142 CUST_192_PI427486876 CUST_192_PI427486876 FALSE lcl|NC_009085.1_gene_194 unmapped AGCATTTCTTCAGCCACTATAAAGATTTAGAACCAGGCAAATGGGTGAAAATCAGCGGTT
13 96 140 CUST_2885_PI427486876 CUST_2885_PI427486876 FALSE lcl|NC_009085.1_gene_2910 unmapped AGCAGTACGTCCTCAACATATCGAACGTTTGCAAAAACTTGATGATGAAGGTCGTCTAGT
14 96 138 CUST_1316_PI427486876 CUST_1316_PI427486876 FALSE lcl|NC_009085.1_gene_1331 unmapped CGTAAAGTGGTTTTAATGGATTGGCACCATGATTTTGAGCACGCAGAGGCTTTAGTACTC
15 96 136 CUST_1015_PI427486876 CUST_1015_PI427486876 FALSE lcl|NC_009085.1_gene_1030 unmapped AACTTAACTGATGCCGATCTTGCAGAAGCAGAAACGCTTACTGTAACTGCGAAACAAAAA
16 96 134 CUST_1122_PI427486876 CUST_1122_PI427486876 FALSE lcl|NC_009085.1_gene_1137 unmapped CTTGCTCTAGATCGAGGTTATGTATTTGAGCGTCTTGAGCCTCACCAAATTGAATCAGGT
17 96 132 CUST_952_PI427486876 CUST_952_PI427486876 FALSE lcl|NC_009085.1_gene_967 unmapped CTTGAAAGAACACATTCCTGAACTACAACGTGTGGTTGACCAAACAGACCATACACAAGC
18 96 130 CUST_511_PI427486876 CUST_511_PI427486876 FALSE lcl|NC_009085.1_gene_515 unmapped ATTTTGTTCCCGTTCTTACGTGAAGCGGTAAACGATCTAGTAACAAAAGGTAGCTTCCCA
19 96 128 CUST_474_PI427486876 CUST_474_PI427486876 FALSE lcl|NC_009085.1_gene_478 unmapped ATTCAAGAAAATCCTGATTTACAGGTGCTTGAAATCGCTTGTGGTTTATCACCTCGAGGC
20 96 126 CUST_2489_PI427486876 CUST_2489_PI427486876 FALSE lcl|NC_009085.1_gene_2509 unmapped GAAAATTTAACAGGCCGAGCTTTCTATGTCTGGATGCATAAAGAACCTGGTTTCCACCTG

Total number of rows: 15744

Table truncated, full table size 2346 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16729_038224_D_GEO_20120117.txt.gz 1.2 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap