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Platform GPL16852 Query DataSets for GPL16852
Status Public on Aug 15, 2013
Title Camellia sinensis 4x44k Microarray designed by Genotypic Technology Private Limited. (AMADID:043117)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Camellia sinensis
Manufacturer Agilent Technologies
Manufacture protocol www.chem.agilent.com
 
 
Contributor(s) Chandrashekara KN
Submission date Mar 20, 2013
Last update date Aug 15, 2013
Contact name Genotypic technology
E-mail(s) sudha.rao@genotypic.co.in
Organization name Genotypic Technology
Street address 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE
City Bangalore
State/province Karnataka
ZIP/Postal code 560094
Country India
 
Samples (4) GSM1103075, GSM1103076, GSM1103077, GSM1103078
Series (1)
GSE45360 Differential gene expression during Exobasidium vexans and Pestalotiopsis theae infection in tea by DNA Microarray

Data table header descriptions
ID Oligonucleotide probe ID
GeneBank GeneBank ID
GeneName Gene Name
Description Gene Description
SEQUENCE Oligonucleotide Probe sequence
SPOT_ID

Data table
ID GeneBank GeneName Description SEQUENCE SPOT_ID
GT_EA615_Sp_AB086853.1_4671 AB086853.1 AB086853.1 Camellia sinensis mitochondrial DNA, RAPD fragment, clone-TMIR-2C; Next best Hit- AT5G40060.1(alignment length 13bp with 100.00%identity) TTTCGGTATTCATCTCCAGAGCCCAGTCAGATGCTTCAATCCTTCATTCATATTCCGTCT similar to: AB086853.1
GT_EA615_A_84_P16312 NM_126690 AT2G07180 Arabidopsis thaliana protein kinase, putative (AT2G07180) mRNA, complete cds [NM_126690] GAAAGTGGTAGAAGCAAGAGCGAAGCCGCGGTCGACACTGAAAAATATGTTTCTACTCTT similar to: NM_126690
GT_EA615_Sp_EU563238.1_1731 EU563238.1 EU563238.1 Camellia sinensis CBF-like protein 1 mRNA, complete cds; Next best Hit- EF205150.1(alignment length 12bp with 100.00%identity) CGCGTGGTGCGCAGCACTAATTGTTCTGCATTTTATTGGATTTATTTTAGGATTTGATTC similar to: EU563238.1
GT_EA615_A_84_P532550 NM_117924 AT4G18140 Arabidopsis thaliana phosphatase (AT4G18140) mRNA, complete cds [NM_117924] TGCCAACGATGTTCGTCCTGTCATTGCCAAGAGATTCGATCATTCAACAAGAAGTTCTTT similar to: NM_117924
GT_EA615_Sp_HM003246.1_5351 HM003246.1 HM003246.1 Camellia sinensis clone U10BCDNA 3027 40S ribosomal protein s10 mRNA, complete cds; Next best Hit- AT5G66910.1(alignment length 12bp with 100.00%identity) TTTTGGCAAATTAGGGATCAGACCTTGAAACTTAATTGTTGAGTTGCTGAATGAACCTTT similar to: HM003246.1
GT_EA615_Sp_AT1G72950.1_3451 AT1G72950.1 AT1G72950.1 Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynt GCTTAGAAGTAGGAATGTTTTGTCTATTTTTGGAGTGTGTTGCTGGTGTATAGAAGAATA similar to: AT1G72950.1
GT_EA615_Sp_AY845267.1_6101 AY845267.1 AY845267.1 Camellia sinensis cultivar Chin Shin Oolong cytochrome oxidase subunit II (cox2) gene, partial cds; mitochondrial; Next best Hit- AT2G31890.1(alignment length 15bp with 100.00%identity) CGATTCCAGAAGATGATCCAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAG similar to: AY845267.1
GT_EA615_A_84_P518541 NM_123493 AT5G41280 Arabidopsis thaliana unknown protein (AT5G41280) mRNA, complete cds [NM_123493] ATCCGATTCTGACGAGCACATGGCGACTTTTTGCAATGATTCATCCGGAAATTTCACTCG similar to: NM_123493
GT_EA615_A_84_P829748 NM_122105 AAO1 Arabidopsis thaliana AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1); aldehyde oxidase/ indole-3-acetaldehyde oxidase (AAO1) mRNA, complete cds [NM_122105] GGATTGTGATATACTTGTTGTTGTAATAAGCTGCATGGCAATGGCAATGGCAATGGCAAT similar to: NM_122105
GT_EA615_A_84_P210058 NM_120872 AT5G07900 Arabidopsis thaliana mitochondrial transcription termination factor family protein / mTERF family protein (AT5G07900) mRNA, complete cds [NM_120872] TGTGTAATCCAATTTTGGTAGTGAAAGGAAAGCTGATTAGCAAGCCCAACGTGTGTTTTA similar to: NM_120872
GT_EA615_A_84_P523142 NM_101368 AT1G14990 Arabidopsis thaliana unknown protein (AT1G14990) mRNA, complete cds [NM_101368] TTGTGCCTAATCTTGTTATAGCAAATTCGAATCCTGGTATCTTGGAACATTTGTATGGTG similar to: NM_101368
GT_EA615_Sp_JF288558.1_3891 JF288558.1 JF288558.1 Camellia sinensis clone U10GBcDNA-630 phosphoglycerate kinase mRNA, partial cds; Next best Hit- AB018686.1(alignment length 12bp with 100.00%identity) TTGAAGGACGGCTTTCGAGATCAATAATATGATCTCTGTGTTTCAGCCTCACACAAAAAA similar to: JF288558.1
GT_EA615_A_84_P520746 NM_129308 AT2G37530 Arabidopsis thaliana unknown protein (AT2G37530) mRNA, complete cds [NM_129308] TCTTTCCGCCGTCGTCGTAAGGACTATGGGCCTTTGGGAGGCCGACGAAGCCCATTAATT similar to: NM_129308
GT_EA615_A_84_P761007 NM_113205 IAA7 Arabidopsis thaliana IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor (IAA7) mRNA, complete cds [NM_113205] GCAGTTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAGAACAGATCTTGAATTAAT similar to: NM_113205
GT_EA615_Sp_AT5G40920.1_221 AT5G40920.1 AT5G40920.1 Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN- ATP binding; INVOLVED IN- apoptosis, defense response; LOCATED IN- cellular_component unknown; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- NB-ARC (InterPro-IPR002182), Diseas CACTACAGATCCTGTTGTGGTTAGACGTAATAGTTGTTGTTGTATTGTTTGGTGTTTTTT similar to: AT5G40920.1
GT_EA615_A_84_P514626 NM_112291 AT3G14330 Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing protein (AT3G14330) mRNA, complete cds [NM_112291] CATAGTCCTCAGAGACACAAAACGATTCCACCATTTCGTCGACGGAATCTGCTCATGTAA similar to: NM_112291
GT_EA615_A_84_P17994 NM_102151 AT1G23030 Arabidopsis thaliana armadillo/beta-catenin repeat family protein / U-box domain-containing protein (AT1G23030) mRNA, complete cds [NM_102151] CAGAGAGAGGCAAAAGGAAAGCCATATCTTTGTTAGAGCTTCTTCGTAAAGCATGCCAAT similar to: NM_102151
GT_EA615_A_84_P21868 NM_104778 ATGA20OX4 Arabidopsis thaliana ATGA20OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4); gibberellin 20-oxidase (ATGA20OX4) mRNA, complete cds [NM_104778] TTCACAATGAAGCACTATAGAGCAGATATGAACACTCTTGAAGAGTTTACAAATTGGCTC similar to: NM_104778
GT_EA615_A_84_P601436 NM_104789 AT1G61080 Arabidopsis thaliana proline-rich family protein (AT1G61080) mRNA, complete cds [NM_104789] AACCTCCTTTGAACCAGCTTCTTGATAAAGTAGAACGTTACTTCACCAAGATCAAAGAAA similar to: NM_104789
GT_EA615_Sp_AT5G47250.1_1781 AT5G47250.1 AT5G47250.1 Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN- phosphoinositide binding; INVOLVED IN- signal transduction, defense response; LOCATED IN- intrinsic to membrane; EXPRESSED IN- petal, leaf whorl, male gametophyte, flower, pollen tube; E GCTCAGGGTTTGAGAGAGAAGCAGATATTTTGCACAGGATCTTGACATGTTTGGCTAGCT similar to: AT5G47250.1

Total number of rows: 28188

Table truncated, full table size 6408 Kbytes.




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