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Status
Public on Apr 23, 2013
Title
Agilent-021924 SurePrint G3 Human CGH Microarray 8x60K (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
SurePrint G3 Human CGH Microarray 8x60K
Submission date
Apr 23, 2013
Last update date
Oct 12, 2015
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (320)
GSM1130504 , GSM1130505 , GSM1130506 , GSM1130507 , GSM1130508 , GSM1130509
GSM1130510 ,
GSM1130511 ,
GSM1130512 ,
GSM1130513 ,
GSM1130514 ,
GSM1130515 ,
GSM1130516 ,
GSM1130517 ,
GSM1130518 ,
GSM1130519 ,
GSM1224515 ,
GSM1224516 ,
GSM1224517 ,
GSM1483881 ,
GSM1483882 ,
GSM1483883 ,
GSM1483884 ,
GSM1483885 ,
GSM1483886 ,
GSM1483887 ,
GSM1483888 ,
GSM1483889 ,
GSM1483890 ,
GSM1483891 ,
GSM1818114 ,
GSM1818115 ,
GSM1818116 ,
GSM1818117 ,
GSM1818118 ,
GSM1818119 ,
GSM1818120 ,
GSM1818121 ,
GSM1818122 ,
GSM1818123 ,
GSM1818124 ,
GSM1818125 ,
GSM1818126 ,
GSM1818127 ,
GSM1818128 ,
GSM1818129 ,
GSM1818130 ,
GSM1818131 ,
GSM1818132 ,
GSM1818133 ,
GSM1818134 ,
GSM1818135 ,
GSM1818136 ,
GSM1818137 ,
GSM1818138 ,
GSM1818139 ,
GSM1818140 ,
GSM1818141 ,
GSM1818142 ,
GSM1818143 ,
GSM1818144 ,
GSM1818145 ,
GSM1818146 ,
GSM1818147 ,
GSM1818148 ,
GSM1818149 ,
GSM1818150 ,
GSM1818151 ,
GSM1818152 ,
GSM1818153 ,
GSM1818154 ,
GSM1818155 ,
GSM1818156 ,
GSM1818157 ,
GSM1818158 ,
GSM1818159 ,
GSM1818160 ,
GSM1818161 ,
GSM1818162 ,
GSM1818163 ,
GSM1818164 ,
GSM1818165 ,
GSM1818166 ,
GSM1818167 ,
GSM1818168 ,
GSM1818169 ,
GSM1818170 ,
GSM1818171 ,
GSM1818172 ,
GSM1818173 ,
GSM1818174 ,
GSM1818175 ,
GSM1818176 ,
GSM1818177 ,
GSM1818178 ,
GSM1818179 ,
GSM1818180 ,
GSM1818181 ,
GSM1818182 ,
GSM1818183 ,
GSM1818184 ,
GSM1818185 ,
GSM1818186 ,
GSM1818187 ,
GSM1818188 ,
GSM1818189 ,
GSM1818190 ,
GSM1818191 ,
GSM1818192 ,
GSM1818193 ,
GSM1818194 ,
GSM2311260 ,
GSM2311261 ,
GSM2311262 ,
GSM2311263 ,
GSM2311264 ,
GSM2311265 ,
GSM2311266 ,
GSM2311267 ,
GSM2311268 ,
GSM2311269 ,
GSM2311270 ,
GSM2311271 ,
GSM2311272 ,
GSM2311273 ,
GSM2311274 ,
GSM2311275 ,
GSM2311276 ,
GSM2902467 ,
GSM2902468 ,
GSM2902469 ,
GSM2902470 ,
GSM2902471 ,
GSM2902472 ,
GSM2902473 ,
GSM2902474 ,
GSM2902475 ,
GSM2902476 ,
GSM2902477 ,
GSM2902478 ,
GSM2902479 ,
GSM2902480 ,
GSM2902481 ,
GSM2902482 ,
GSM2902483 ,
GSM2902484 ,
GSM2902485 ,
GSM2902486 ,
GSM2902487 ,
GSM2902488 ,
GSM2902489 ,
GSM2902490 ,
GSM2902491 ,
GSM2902492 ,
GSM2902493 ,
GSM2902494 ,
GSM2902495 ,
GSM2902496 ,
GSM2902497 ,
GSM2902498 ,
GSM2902499 ,
GSM2902500 ,
GSM2902501 ,
GSM2902502 ,
GSM2902503 ,
GSM2902504 ,
GSM2902505 ,
GSM2902506 ,
GSM2902507 ,
GSM2902508 ,
GSM2902509 ,
GSM2902510 ,
GSM2902511 ,
GSM2902512 ,
GSM2902513 ,
GSM2902514 ,
GSM2902515 ,
GSM2902516 ,
GSM2902517 ,
GSM2902518 ,
GSM2902519 ,
GSM2902520 ,
GSM2902521 ,
GSM2902522 ,
GSM2902523 ,
GSM2902524 ,
GSM2902525 ,
GSM2902526 ,
GSM2902527 ,
GSM2902528 ,
GSM2902529 ,
GSM2902530 ,
GSM2902531 ,
GSM2902532 ,
GSM2902533 ,
GSM2902534 ,
GSM2902535 ,
GSM2902536 ,
GSM2902537 ,
GSM2902538 ,
GSM2902539 ,
GSM2902540 ,
GSM2902541 ,
GSM2902542 ,
GSM2902543 ,
GSM2902544 ,
GSM2902545 ,
GSM2902546 ,
GSM2902547 ,
GSM2902548 ,
GSM2902549 ,
GSM2902550 ,
GSM2902551 ,
GSM2902552 ,
GSM2902553 ,
GSM2902554 ,
GSM2902555 ,
GSM2902556 ,
GSM2902557 ,
GSM2902558 ,
GSM2902559 ,
GSM2902560 ,
GSM2902561 ,
GSM2902562 ,
GSM2902563 ,
GSM2902564 ,
GSM2902565 ,
GSM2902566 ,
GSM2902567 ,
GSM2902568 ,
GSM2902569 ,
GSM2902570 ,
GSM2902571 ,
GSM2902572 ,
GSM2902573 ,
GSM2982840 ,
GSM2982841 ,
GSM2982842 ,
GSM2982843 ,
GSM2982844 ,
GSM2982845 ,
GSM2982846 ,
GSM2982847 ,
GSM2982848 ,
GSM2982849 ,
GSM2982850 ,
GSM2982851 ,
GSM2982852 ,
GSM2982853 ,
GSM2982854 ,
GSM2982855 ,
GSM2982856 ,
GSM2982857 ,
GSM2982858 ,
GSM2982859 ,
GSM2982860 ,
GSM2982861 ,
GSM2982862 ,
GSM2982863 ,
GSM2982864 ,
GSM2982865 ,
GSM2982866 ,
GSM2982867 ,
GSM2982868 ,
GSM2982869 ,
GSM2982870 ,
GSM2982871 ,
GSM2982872 ,
GSM2982873 ,
GSM2982874 ,
GSM2982875 ,
GSM2982876 ,
GSM2982877 ,
GSM2982878 ,
GSM2982879 ,
GSM2982880 ,
GSM2982881 ,
GSM2982882 ,
GSM2982883 ,
GSM2982884 ,
GSM2982885 ,
GSM2982886 ,
GSM2982887 ,
GSM2982888 ,
GSM2982889 ,
GSM2982890 ,
GSM2982891 ,
GSM2982892 ,
GSM2982893 ,
GSM3093595 ,
GSM3093608 ,
GSM3093616 ,
GSM3093624 ,
GSM3093634 ,
GSM3093636 ,
GSM3377943 ,
GSM3377944 ,
GSM3377945 ,
GSM3377946 ,
GSM3377947 ,
GSM3377948 ,
GSM3377949 ,
GSM4468649 ,
GSM4468650 ,
GSM5696877 ,
GSM5696878 ,
GSM5696879 ,
GSM5696880 ,
GSM5712042 ,
GSM5712043 ,
GSM5712044 ,
GSM5712045 ,
GSM7493282 ,
GSM7503657 ,
GSM7503658 ,
GSM7503659 ,
GSM7503660 ,
GSM7503661 ,
GSM7503662 ,
GSM7503663 Series (20)
GSE46452 Human esophageal dysplasia (16 cases) vs. esophageal squamous cell carcinoma (59 cases)
GSE50602 Human SCC-13 Cells: Control vs. Resitant populations to photodynamic therapy (PDT)
GSE60625 Esophageal cancer intratumor heterogeneity revealed by multi-region whole exome sequencing and aCGH
GSE68409 UNCOVERING VULVAR CARCINOMA: AN INTEGRATIVE APPROACH
GSE70782 Genome-wide methylation profiles in primary intracranial germ cell tumors indicate primordial germ cell origin of germinoma [Agilent]
GSE70787 Genome-wide methylation profiles in primary intracranial germ cell tumors indicate primordial germ cell origin of germinoma
GSE86969 UNCOVERING VULVAR CARCINOMA: AN INTEGRATIVE APPROACH [CGH]
GSE108507 Progression risk of gland-forming gastric neoplasms assessed by DNA copy-number profiling
GSE110221 Single-cell genetic analysis of clonal dynamics in colorectal adenomas indicates CDX2 gains as a predictor of recurrence
GSE113015 Dynamics of genome alterations in Crohn’s disease associated colorectal carcinogenesis
GSE119586 Genomic copy number number characterisation of glioblastoma (GBM) cell lines.
GSE119637 Multi-level characterization of a glioblastoma cell line panel
GSE147500 Long-term expansion with germline potential of human primordial germ cell-like cells in vitro
GSE148415 Long-term expansion with germline potential of human primordial germ cell-like cells in vitro [aCGH]
GSE189268 aCGH profiling for non-small cell lung cancer cell lines sensitive or resistant to CPL304110 FGFR inhibitor
GSE189270 aCGH and high-throughput transcriptome profiling of non-small cell lung cancer cell lines sensitive or resistant to CPL304110 FGFR inhibitor
GSE190026 Albinism Family Array CGH Data
GSE235019 Human HFF cells large rearranements detection after CRISPR-Cas9 nuclease (Fig.2c)
GSE235487 Human HFF cells large rearrangements detection after CRISPR-Cas9 nuclease (Fig. 4C)
GSE235488 Human HFF cells large rearrangements detection after CRISPR-Cas9 nuclease (Fig. 5e)
Relations Alternative to
GPL10152
Data table header descriptions ID Agilent Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank or RefSeq Accession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
RANGE_GB RefSeq.version of chromosome (NBCI Build 36)
RANGE_START Start position (relative to the RANGE_GB accession)
RANGE_END End position (relative to the RANGE_GB accession)
CYTOBAND Cytoband
DESCRIPTION Description
Data table ID SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION RANGE_GB RANGE_START RANGE_END CYTOBAND DESCRIPTION A_14_P128532
FALSE
NM_001419 ELAVL1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
ref|NM_001419
chr19:7974628-7974687
NC_000019.8 7974628
7974687
hs|p13.2
Homo sapiens ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) (ELAVL1), mRNA.
A_14_P105322
FALSE
NM_003558 PIP5K1B
phosphatidylinositol-4-phosphate 5-kinase, type I, beta
ref|NM_003558
chr9:70791222-70791281
NC_000009.10 70791222
70791281
hs|q21.11
Homo sapiens phosphatidylinositol-4-phosphate 5-kinase, type I, beta (PIP5K1B), transcript variant 2, mRNA.
A_14_P128090
FALSE
chr5:15085877-15085936
NC_000005.8 15085877
15085936
hs|p15.2
A_16_P02073591
FALSE
chr9:19983767-19983826
NC_000009.10 19983767
19983826
hs|p21.3
A_14_P135539
FALSE
NM_001101419 ZNF541
zinc finger protein 541
ref|NM_001101419
chr19:52739093-52739148
NC_000019.8 52739093
52739148
hs|q13.32
Homo sapiens zinc finger protein 541 (ZNF541), mRNA.
A_14_P118924
FALSE
NM_015076 CDC2L6
cell division cycle 2-like 6 (CDK8-like)
ref|NM_015076
chr6:111232868-111232927
NC_000006.10 111232868
111232927
hs|q21
Homo sapiens cell division cycle 2-like 6 (CDK8-like) (CDC2L6), mRNA.
A_16_P17264851
FALSE
chr5:114766918-114766977
NC_000005.8 114766918
114766977
hs|q22.3
A_14_P129144
FALSE
AF520801 gb|AF520801|gb|AY538274
chr6:10289217-10289276
NC_000006.10 10289217
10289276
hs|p24.3
Homo sapiens clone 10AP3 MRDS1 protein (MRDS1) mRNA, partial cds.
A_16_P38515598
FALSE
chr8:103838802-103838861
NC_000008.9 103838802
103838861
hs|q22.3
A_14_P126756
FALSE
NM_000836 GRIN2D
glutamate receptor, ionotropic, N-methyl D-aspartate 2D
ref|NM_000836
chr19:53632960-53633019
NC_000019.8 53632960
53633019
hs|q13.32
Homo sapiens glutamate receptor, ionotropic, N-methyl D-aspartate 2D (GRIN2D), mRNA.
A_16_P03384707
FALSE
NM_017742 ZCCHC2
zinc finger, CCHC domain containing 2
ref|NM_017742
chr18:58366380-58366439
NC_000018.8 58366380
58366439
hs|q21.33
Homo sapiens zinc finger, CCHC domain containing 2 (ZCCHC2), mRNA.
A_14_P123652
FALSE
chr10:107207747-107207806
NC_000010.9 107207747
107207806
hs|q25.1
A_14_P111489
FALSE
NM_032142 CEP192
centrosomal protein 192kDa
ref|NM_032142
chr18:13095047-13095103
NC_000018.8 13095047
13095103
hs|p11.21
Homo sapiens centrosomal protein 192kDa (CEP192), mRNA.
A_14_P126461
FALSE
NM_021223 MYL7
myosin, light chain 7, regulatory
ref|NM_021223
chr7:44144968-44145019
NC_000007.12 44144968
44145019
hs|p13
Homo sapiens myosin, light chain 7, regulatory (MYL7), mRNA.
A_14_P201543
FALSE
chrX:49498502-49498561
NC_000023.9 49498502
49498561
hs|p11.23
A_14_P103232
FALSE
chr2:229250832-229250891
NC_000002.10 229250832
229250891
hs|q36.3
A_14_P116743
FALSE
chr10:119158873-119158932
NC_000010.9 119158873
119158932
hs|q26.11
A_14_P124410
FALSE
NM_005987 SPRR1A
small proline-rich protein 1A
ref|NM_005987
chr1:151224197-151224256
NC_000001.9 151224197
151224256
hs|q21.3
Homo sapiens small proline-rich protein 1A (SPRR1A), mRNA.
A_14_P101349
FALSE
chrX:76601831-76601890
NC_000023.9 76601831
76601890
hs|q21.1
A_14_P121110
FALSE
BC014312 gb|BC014312
chr6:27200902-27200961
NC_000006.10 27200902
27200961
hs|p22.1
Homo sapiens histone cluster 1, H2bj, mRNA (cDNA clone IMAGE:4048288), with apparent retained intron.
55077 10676 Kbytes .Supplementary data files not provided
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