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Platform GPL17132 Query DataSets for GPL17132
Status Public on May 08, 2013
Title Agilent-037367 SALSIFY2 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 15K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description probe set for SL1344 genes and sRNAs

Arrays of this design have barcodes that begin with 16037367 or 2537367.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date May 07, 2013
Last update date May 08, 2013
Contact name Karsten Hokamp
E-mail(s) kahokamp@tcd.ie
Phone +35318962719
Organization name Trinity College Dublin
Department Smurfit Institute of Genetics
Street address College Green
City Dublin
ZIP/Postal code 2
Country Ireland
 
Samples (36) GSM1138339, GSM1138340, GSM1138341, GSM1138342, GSM1138343, GSM1138344 
Series (2)
GSE46763 Transcriptomic profiling of Salmonella Typhimurium upon desiccation on stainless steel and subsequent rehydration
GSE69857 Exposure of Salmonella enterica serovar Typhimurium to three humectants used in the food industry: NaCl, KCl and glycerol

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ORF
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ORF CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 jSL2171|1|yeiG jSL2171|1|yeiG FALSE yeiG unmapped CTCCGGTACTGTACTGGTTGTCTGGGTTGACCTGCAATGATGAGAACTTTACCACCAAAG
5 96 156 jSL0175|1|stiH jSL0175|1|stiH FALSE stiH unmapped TTAACACAAAAAGGAACGTACAGCGAAGCGGGTAGCAATGGGCAACAGATGGATTTTTAT
6 96 154 jSL2474|3|shdA jSL2474|3|shdA FALSE shdA unmapped CAGCGATGATGTGTCGGTATCGTTTGATGATGCTACGGTGAAACAGGATCTTCCGGCTAA
7 96 152 jSL4012|3|sbp jSL4012|3|sbp FALSE sbp unmapped AACAATAACGATCAGGCCAAAGCGCAGGACTTTGTCAAAGCCCTGTTTAAAAACGTTGAA
8 96 150 jSL0217|3|rpsB jSL0217|3|rpsB FALSE rpsB unmapped CTGAAAGACCTGGAAACTCAGTCTCAGGACGGTACTTTCGAAAAGCTGACCAAGAAAGAA
9 96 148 jSL2191|1|spr jSL2191|1|spr FALSE spr unmapped ATAGCGATAGCTCTTCACTGCAAGCCTCTCAGGATGAATTTGAAAATATGGTGCGTAACC
10 96 146 jSL2618|3|kgtP jSL2618|3|kgtP FALSE kgtP unmapped CATTAAAAGAAGCCGGTTCGTTGAAAGGTTTGTGGCGTAATCGCAAAGCCTTTTTGATGG
11 96 144 jSL1946|3 jSL1946|3 FALSE unmapped GAAACCAGTGCAAAAAGCAATAAAGCGGTGAAAGAGAAAAAATCCACGACCAGTCAAGAG
12 96 142 jSL3457|2|yrfB jSL3457|2|yrfB FALSE yrfB unmapped GCTGAACCGCTTTTCGGGCGCACAGTGGAAAATCCGCGTCCTTTTTCGCCGTTAGATTTC
13 96 140 jSL2365|3|pgtB jSL2365|3|pgtB FALSE pgtB unmapped TTTGCTACGTCATACGCTGGGCCAGCTCAATATGCAACGCAGGCAGCTTGAACAAGAGGT
14 96 138 ctrl_SL2243 ctrl_SL2243 FALSE unmapped GCTGGCTTTTTGCTATTGAAGGTATCCCTACCGTATTCCTTGGCATCCTGACATTTTATT
15 96 136 jSL4512|2|gpmB jSL4512|2|gpmB FALSE gpmB unmapped TCCTGTCTGGAGCTACCGCAGGGCAGCCGACCTTTATTGGTCAGTCACGGTATCGCGTTG
16 96 134 jSL2044|2|sbcB jSL2044|2|sbcB FALSE sbcB unmapped AGCTTTCGTCTGGAACATTTAACCCGGGCGAACGGGATCGAACACAGCAACGCGCATGAT
17 96 132 jSL1332|1|sseB jSL1332|1|sseB FALSE sseB unmapped ATCCGTTTGCCGAAGGGTATGGTGTTTTGCTTATTCTCCTTATGGTTATTCAGGCTATCG
18 96 130 jSL0192|3|fhuA jSL0192|3|fhuA FALSE fhuA unmapped GTCGTTTTATTGGTTCCAGTTACGGCGATCCGGCTAATAGCTTCAAGGTAGGCAGCGCAG
19 96 128 jSL4023|2|ego jSL4023|2|ego FALSE ego unmapped GCGTCTGCAAGAGTTGCTGAAAAAGGGTGTCGGAATTGTATTTATTTCTCATAAGCTACC
20 96 126 jSL1670|3|cls jSL1670|3|cls FALSE cls unmapped CGTGAAAATCTATCAGTTCGAAGGCGGGCTGTTACATACCAAAAGCGTGCTGGTCGATGG

Total number of rows: 15744

Table truncated, full table size 1822 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL17132_037367_D_GEO_20111110.txt.gz 542.9 Kb (ftp)(http) TXT

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