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Status
Public on May 08, 2013
Title
Agilent-037367 SALSIFY2 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 15K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
probe set for SL1344 genes and sRNAs Arrays of this design have barcodes that begin with 16037367 or 2537367. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
May 07, 2013
Last update date
May 08, 2013
Contact name
Karsten Hokamp
E-mail(s)
kahokamp@tcd.ie
Phone
+35318962719
Organization name
Trinity College Dublin
Department
Smurfit Institute of Genetics
Street address
College Green
City
Dublin
ZIP/Postal code
2
Country
Ireland
Samples (36)
GSM1138339 , GSM1138340 , GSM1138341 , GSM1138342 , GSM1138343 , GSM1138344
GSM1711403 ,
GSM1711404 ,
GSM1711405 ,
GSM1711406 ,
GSM1711407 ,
GSM1711408 ,
GSM1711409 ,
GSM1711410 ,
GSM1711411 ,
GSM1711412 ,
GSM1711413 ,
GSM1711414 ,
GSM1711415 ,
GSM1711416 ,
GSM1711417 ,
GSM1711418 ,
GSM1711419 ,
GSM1711420 ,
GSM1711421 ,
GSM1711422 ,
GSM1711423 ,
GSM1711424 ,
GSM1711425 ,
GSM1711426 ,
GSM1711427 ,
GSM1711428 ,
GSM1711429 ,
GSM1711430 ,
GSM1711431 ,
GSM1711432
Series (2)
GSE46763
Transcriptomic profiling of Salmonella Typhimurium upon desiccation on stainless steel and subsequent rehydration
GSE69857
Exposure of Salmonella enterica serovar Typhimurium to three humectants used in the food industry: NaCl, KCl and glycerol
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
ORF
CHROMOSOMAL_LOCATION
Chromosomal Location
SEQUENCE
Sequence
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
ORF
CHROMOSOMAL_LOCATION
SEQUENCE
1
96
164
GE_BrightCorner
GE_BrightCorner
pos
2
96
162
DarkCorner
DarkCorner
pos
3
96
160
DarkCorner
DarkCorner
pos
4
96
158
jSL2171|1|yeiG
jSL2171|1|yeiG
FALSE
yeiG
unmapped
CTCCGGTACTGTACTGGTTGTCTGGGTTGACCTGCAATGATGAGAACTTTACCACCAAAG
5
96
156
jSL0175|1|stiH
jSL0175|1|stiH
FALSE
stiH
unmapped
TTAACACAAAAAGGAACGTACAGCGAAGCGGGTAGCAATGGGCAACAGATGGATTTTTAT
6
96
154
jSL2474|3|shdA
jSL2474|3|shdA
FALSE
shdA
unmapped
CAGCGATGATGTGTCGGTATCGTTTGATGATGCTACGGTGAAACAGGATCTTCCGGCTAA
7
96
152
jSL4012|3|sbp
jSL4012|3|sbp
FALSE
sbp
unmapped
AACAATAACGATCAGGCCAAAGCGCAGGACTTTGTCAAAGCCCTGTTTAAAAACGTTGAA
8
96
150
jSL0217|3|rpsB
jSL0217|3|rpsB
FALSE
rpsB
unmapped
CTGAAAGACCTGGAAACTCAGTCTCAGGACGGTACTTTCGAAAAGCTGACCAAGAAAGAA
9
96
148
jSL2191|1|spr
jSL2191|1|spr
FALSE
spr
unmapped
ATAGCGATAGCTCTTCACTGCAAGCCTCTCAGGATGAATTTGAAAATATGGTGCGTAACC
10
96
146
jSL2618|3|kgtP
jSL2618|3|kgtP
FALSE
kgtP
unmapped
CATTAAAAGAAGCCGGTTCGTTGAAAGGTTTGTGGCGTAATCGCAAAGCCTTTTTGATGG
11
96
144
jSL1946|3
jSL1946|3
FALSE
unmapped
GAAACCAGTGCAAAAAGCAATAAAGCGGTGAAAGAGAAAAAATCCACGACCAGTCAAGAG
12
96
142
jSL3457|2|yrfB
jSL3457|2|yrfB
FALSE
yrfB
unmapped
GCTGAACCGCTTTTCGGGCGCACAGTGGAAAATCCGCGTCCTTTTTCGCCGTTAGATTTC
13
96
140
jSL2365|3|pgtB
jSL2365|3|pgtB
FALSE
pgtB
unmapped
TTTGCTACGTCATACGCTGGGCCAGCTCAATATGCAACGCAGGCAGCTTGAACAAGAGGT
14
96
138
ctrl_SL2243
ctrl_SL2243
FALSE
unmapped
GCTGGCTTTTTGCTATTGAAGGTATCCCTACCGTATTCCTTGGCATCCTGACATTTTATT
15
96
136
jSL4512|2|gpmB
jSL4512|2|gpmB
FALSE
gpmB
unmapped
TCCTGTCTGGAGCTACCGCAGGGCAGCCGACCTTTATTGGTCAGTCACGGTATCGCGTTG
16
96
134
jSL2044|2|sbcB
jSL2044|2|sbcB
FALSE
sbcB
unmapped
AGCTTTCGTCTGGAACATTTAACCCGGGCGAACGGGATCGAACACAGCAACGCGCATGAT
17
96
132
jSL1332|1|sseB
jSL1332|1|sseB
FALSE
sseB
unmapped
ATCCGTTTGCCGAAGGGTATGGTGTTTTGCTTATTCTCCTTATGGTTATTCAGGCTATCG
18
96
130
jSL0192|3|fhuA
jSL0192|3|fhuA
FALSE
fhuA
unmapped
GTCGTTTTATTGGTTCCAGTTACGGCGATCCGGCTAATAGCTTCAAGGTAGGCAGCGCAG
19
96
128
jSL4023|2|ego
jSL4023|2|ego
FALSE
ego
unmapped
GCGTCTGCAAGAGTTGCTGAAAAAGGGTGTCGGAATTGTATTTATTTCTCATAAGCTACC
20
96
126
jSL1670|3|cls
jSL1670|3|cls
FALSE
cls
unmapped
CGTGAAAATCTATCAGTTCGAAGGCGGGCTGTTACATACCAAAAGCGTGCTGGTCGATGG
Total number of rows: 15744 Table truncated, full table size 1822 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL17132_037367_D_GEO_20111110.txt.gz
542.9 Kb
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