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Status
Public on Feb 03, 2014
Title
Affymetrix GeneChip Human Genome U133 Array Set HG-U133A based on a custom CDF (GeneAnnot version 2.1.0)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix HG-U133A microarrays analysed with custom chip definition files based on the GeneAnnot database. For further information, see Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.: Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinformatics. 2007 Nov 15;8(1):446 We used Version 2.1.0 of custom CDF files and R packages based on GeneAnnot version 1.9 and GeneCards version 2.41, available online at http://www.xlab.unimo.it/GA_CDF/
Submission date
May 21, 2013
Last update date
Feb 03, 2014
Contact name
Silvio Bicciato
E-mail(s)
silvio.bicciato@unipd.it Phone
+39-049-827-6108
Organization name
University of Padova
Department
Molecular Medicine
Street address
via U. Bassi 59/b
City
Padova
ZIP/Postal code
35131
Country
Italy
Samples (66)
GSM1145337 , GSM1145338 , GSM1145339 , GSM1145340 , GSM1145341 , GSM1145342
GSM1145343 ,
GSM1145344 ,
GSM1145345 ,
GSM1145346 ,
GSM1145347 ,
GSM1145348 ,
GSM1145349 ,
GSM1145350 ,
GSM1145351 ,
GSM1145352 ,
GSM1145353 ,
GSM1145354 ,
GSM1145355 ,
GSM1145356 ,
GSM1145357 ,
GSM1145358 ,
GSM1145359 ,
GSM1145360 ,
GSM1145361 ,
GSM1145362 ,
GSM1145363 ,
GSM1145364 ,
GSM1145365 ,
GSM1145366 ,
GSM1145367 ,
GSM1145368 ,
GSM1145369 ,
GSM1145370 ,
GSM1145371 ,
GSM1145372 ,
GSM1145373 ,
GSM1145374 ,
GSM1145375 ,
GSM1145376 ,
GSM1145377 ,
GSM1145378 ,
GSM1145379 ,
GSM1145380 ,
GSM1145381 ,
GSM1145382 ,
GSM1145383 ,
GSM1145384 ,
GSM1145385 ,
GSM1145386 ,
GSM1145387 ,
GSM1145388 ,
GSM1145389 ,
GSM1145390 ,
GSM1145391 ,
GSM1145392 ,
GSM1145393 ,
GSM1145394 ,
GSM1145395 ,
GSM1145396 ,
GSM1568249 ,
GSM1568250 ,
GSM1568251 ,
GSM1568252 ,
GSM1568253 ,
GSM1568254 Series (3)
GSE47122 Transcriptomic profiling of the development of the inflammatory response in human monocytes in vitro
GSE64299 Transcriptional Regulationand Chromatin Dynamics inHuman Epithelial Cell Differentiation (expression)
GSE64328 Transcriptional Regulationand Chromatin Dynamics inHuman Epithelial Cell Differentiation
Data table header descriptions ID GeneCards_ID GeneCards IDs (www.genecards.org)
ORF Gene symbol
Entrez_ID Entrez gene IDs
Gene_Description Gene description
Data table ID GeneCards_ID ORF Entrez_ID Gene_Description GC00U902522_at
GC00U902522
NPSA 266811
novel prostate-specific antigen
GC00U902726_at
GC00U902726
D21S2088E 266917
D21S2088E
GC00U902727_at
GC00U902727
D21S2090E 266918
D21S2090E
GC00U902728_at
GC00U902728
D21S2091E 266919
D21S2091E
GC00U905129_at
GC00U905129
SCAMPER 286756
sphingolipid Ca2+ release mediating protein of endoplasmic reticulum
GC00U913730_at
GC00U913730
LOC389831 389831
hypothetical gene supported by AL713796
GC00U916295_at
GC00U916295
LOC402779 402779
hypothetical LOC402779
GC00U921637_at
GC00U921637
LOC553103 553103
hypothetical LOC553103
GC00U921664_at
GC00U921664
LOC641467 641467
hypothetical LOC641467
GC00U921668_at
GC00U921668
BEYLA 497634
hypothetical LOC497634
GC00U921857_at
GC00U921857
LOC652147 652147
"similar to U5 snRNP-specific protein, 200 kDa"
GC00U922209_at
GC00U922209
LOC723809 723809
hypothetical LOC723809
GC00U922231_at
GC00U922231
LOC651721 651721
hypothetical protein LOC651721
GC00U922298_at
GC00U922298
LOC100093698 100093698
unknown transcript
GC00U922307_at
GC00U922307
LOC100125871 100125871
hypothetical protein LOC100125871
GC00U922384_at
GC00U922384
LOC100125918 100125918
hypothetical protein LOC100125918
GC00U922430_at
GC00U922430
LOC100133790 100133790
intestinal mucin-like
GC00U922457_at
GC00U922457
LOC100144604 100144604
hypothetical LOC100144604
GC00U922633_at
GC00U922633
LOC100144602 100144602
hypothetical
GC00U922796_at
GC00U922796
LOC100144597 100144597
hypothetical transcript
18862 1412 Kbytes .Supplementary file Size Download File type/resource GPL17180_gahgu133plus2_2.1.0.cdf.gz
10.3 Mb
(ftp) (http) CDF
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