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Status
Public on Jul 02, 2013
Title
Agilent-028916 Mouse 8x60k CGH [ProbeName version]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
selected from 162k probe set extended by 1M chrY set Arrays of this design have barcodes that begin with 16028916 or 2528916. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
Submission date
May 23, 2013
Last update date
May 03, 2016
Contact name
Vendula Svendova
E-mail(s)
vendula.svendova@medunigraz.at
Organization name
Medical University Graz
Street address
Auenbruggerplatz 2
City
Graz
ZIP/Postal code
8036
Country
Austria
Samples (34)
GSM1146955 , GSM1146956 , GSM1146957 , GSM1146958 , GSM1146959 , GSM1146960
GSM1146961 ,
GSM1146962 ,
GSM1146963 ,
GSM1146965 ,
GSM1146966 ,
GSM1146967 ,
GSM1146968 ,
GSM1146969 ,
GSM1146970 ,
GSM1146971 ,
GSM1146972 ,
GSM1146973 ,
GSM1146975 ,
GSM1146976 ,
GSM1146977 ,
GSM1146978 ,
GSM1146979 ,
GSM1146980 ,
GSM1146981 ,
GSM1146982 ,
GSM1146983 ,
GSM1146984 ,
GSM1146985 ,
GSM1146986 ,
GSM1146987 ,
GSM1146988 ,
GSM1146989 ,
GSM1146990
Series (1)
GSE47212
Murine HCC development: comparison of wt, krt18+/- and krt18-/- liver tumors hybridized against non-affected wt liver tissue
Relations
Alternative to
GPL21806 (Feature number version)
Data table header descriptions
ID
Probe Name
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBankAccession
GENE_SYMBOL
Gene Symbol
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
Data table
ID
SPOT_ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
ACCESSION_STRING
CHROMOSOMAL_LOCATION
DESCRIPTION
A_53_P100023
A_53_P100023
FALSE
chr1:166391070-166391130
NA
A_53_P100035
A_53_P100035
FALSE
unmapped
NA
A_53_P100128
A_53_P100128
FALSE
NM_010325
Got2
ref|NM_010325
chr8:98392535-98392595
Mus musculus glutamate oxaloacetate transaminase 2, mitochondrial (Got2), nuclear gene encoding mitochondrial protein, mRNA.
A_53_P100313
A_53_P100313
FALSE
NM_021381
Prokr1
ref|NM_021381
chr6:87535797-87535857
Mus musculus prokineticin receptor 1 (Prokr1), mRNA.
A_53_P100398
A_53_P100398
FALSE
unmapped
NA
A_53_P100402
A_53_P100402
FALSE
NM_145627
Rbm10
ref|NM_145627
chrX:20220115-20220175
Mus musculus RNA binding motif protein 10 (Rbm10), mRNA.
A_53_P100536
A_53_P100536
FALSE
NM_001159603
Pum1
ref|NM_001159603|ref|NM_001159604|ref|NM_001159605|ref|NM_001159606|ref|NM_030722
chr4:130253777-130253837
Mus musculus pumilio 1 (Drosophila) (Pum1), transcript variant 2, mRNA.
A_53_P100569
A_53_P100569
FALSE
unmapped
NA
A_53_P100620
A_53_P100620
FALSE
unmapped
NA
A_53_P100630
A_53_P100630
FALSE
chr11:17827103-17827163
NA
A_53_P100666
A_53_P100666
FALSE
unmapped
NA
A_53_P100704
A_53_P100704
FALSE
NM_001039723
Tmem120b
ref|NM_001039723
chr5:123529044-123529104
Mus musculus transmembrane protein 120B (Tmem120b), mRNA.
A_53_P100736
A_53_P100736
FALSE
unmapped
NA
A_53_P100974
A_53_P100974
FALSE
NM_001160400
Megf8
ref|NM_001160400
chr7:26118298-26118358
Mus musculus multiple EGF-like-domains 8 (Megf8), mRNA.
A_53_P101095
A_53_P101095
FALSE
NM_013829
Plcb4
ref|NM_013829
chr2:135664197-135664257
Mus musculus phospholipase C, beta 4 (Plcb4), mRNA.
A_53_P101118
A_53_P101118
FALSE
NM_177250
Lingo4
ref|NM_177250
chr3:94203882-94203942
Mus musculus leucine rich repeat and Ig domain containing 4 (Lingo4), mRNA.
A_53_P101282
A_53_P101282
FALSE
NM_026580
Otub2
ref|NM_026580
chr12:104638409-104638469
Mus musculus OTU domain, ubiquitin aldehyde binding 2 (Otub2), mRNA.
A_53_P101378
A_53_P101378
FALSE
ens|ENSMUST00000055297
chr11:8757465-8757525
NA
A_53_P101429
A_53_P101429
FALSE
unmapped
NA
A_53_P101432
A_53_P101432
FALSE
NM_028291
Pan3
ref|NM_028291
chr5:148351305-148351365
Mus musculus PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) (Pan3), mRNA.
Total number of rows: 54829 Table truncated, full table size 7099 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL17189_028916_D_GEO_20121009.txt.gz
2.4 Mb
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TXT