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Platform GPL17189 Query DataSets for GPL17189
Status Public on Jul 02, 2013
Title Agilent-028916 Mouse 8x60k CGH [ProbeName version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description selected from 162k probe set extended by 1M chrY set

Arrays of this design have barcodes that begin with 16028916 or 2528916.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
 
Submission date May 23, 2013
Last update date May 03, 2016
Contact name Vendula Svendova
E-mail(s) vendula.svendova@medunigraz.at
Organization name Medical University Graz
Street address Auenbruggerplatz 2
City Graz
ZIP/Postal code 8036
Country Austria
 
Samples (34) GSM1146955, GSM1146956, GSM1146957, GSM1146958, GSM1146959, GSM1146960 
Series (1)
GSE47212 Murine HCC development: comparison of wt, krt18+/- and krt18-/- liver tumors hybridized against non-affected wt liver tissue
Relations
Alternative to GPL21806 (Feature number version)

Data table header descriptions
ID Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description

Data table
ID SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION
A_53_P100023 A_53_P100023 FALSE chr1:166391070-166391130 NA
A_53_P100035 A_53_P100035 FALSE unmapped NA
A_53_P100128 A_53_P100128 FALSE NM_010325 Got2 ref|NM_010325 chr8:98392535-98392595 Mus musculus glutamate oxaloacetate transaminase 2, mitochondrial (Got2), nuclear gene encoding mitochondrial protein, mRNA.
A_53_P100313 A_53_P100313 FALSE NM_021381 Prokr1 ref|NM_021381 chr6:87535797-87535857 Mus musculus prokineticin receptor 1 (Prokr1), mRNA.
A_53_P100398 A_53_P100398 FALSE unmapped NA
A_53_P100402 A_53_P100402 FALSE NM_145627 Rbm10 ref|NM_145627 chrX:20220115-20220175 Mus musculus RNA binding motif protein 10 (Rbm10), mRNA.
A_53_P100536 A_53_P100536 FALSE NM_001159603 Pum1 ref|NM_001159603|ref|NM_001159604|ref|NM_001159605|ref|NM_001159606|ref|NM_030722 chr4:130253777-130253837 Mus musculus pumilio 1 (Drosophila) (Pum1), transcript variant 2, mRNA.
A_53_P100569 A_53_P100569 FALSE unmapped NA
A_53_P100620 A_53_P100620 FALSE unmapped NA
A_53_P100630 A_53_P100630 FALSE chr11:17827103-17827163 NA
A_53_P100666 A_53_P100666 FALSE unmapped NA
A_53_P100704 A_53_P100704 FALSE NM_001039723 Tmem120b ref|NM_001039723 chr5:123529044-123529104 Mus musculus transmembrane protein 120B (Tmem120b), mRNA.
A_53_P100736 A_53_P100736 FALSE unmapped NA
A_53_P100974 A_53_P100974 FALSE NM_001160400 Megf8 ref|NM_001160400 chr7:26118298-26118358 Mus musculus multiple EGF-like-domains 8 (Megf8), mRNA.
A_53_P101095 A_53_P101095 FALSE NM_013829 Plcb4 ref|NM_013829 chr2:135664197-135664257 Mus musculus phospholipase C, beta 4 (Plcb4), mRNA.
A_53_P101118 A_53_P101118 FALSE NM_177250 Lingo4 ref|NM_177250 chr3:94203882-94203942 Mus musculus leucine rich repeat and Ig domain containing 4 (Lingo4), mRNA.
A_53_P101282 A_53_P101282 FALSE NM_026580 Otub2 ref|NM_026580 chr12:104638409-104638469 Mus musculus OTU domain, ubiquitin aldehyde binding 2 (Otub2), mRNA.
A_53_P101378 A_53_P101378 FALSE ens|ENSMUST00000055297 chr11:8757465-8757525 NA
A_53_P101429 A_53_P101429 FALSE unmapped NA
A_53_P101432 A_53_P101432 FALSE NM_028291 Pan3 ref|NM_028291 chr5:148351305-148351365 Mus musculus PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) (Pan3), mRNA.

Total number of rows: 54829

Table truncated, full table size 7099 Kbytes.




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Supplementary file Size Download File type/resource
GPL17189_028916_D_GEO_20121009.txt.gz 2.4 Mb (ftp)(http) TXT

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