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Status
Public on Nov 22, 2013
Title
Agilent-028412 CGH chicken array focus on unknown chromosomes
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Gallus gallus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
including chr 1, 2, 3, 16, z, w Arrays of this design have barcodes that begin with 16028412 or 2528412. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jun 06, 2013
Last update date
Nov 22, 2013
Contact name
Jason Abernathy
Organization name
USDA-ARS
Lab
Aquatic Animal Health Research Unit
Street address
990 Wire Road
City
Auburn
State/province
AL
ZIP/Postal code
36832
Country
USA
Samples (24)
GSM1154804 , GSM1154805 , GSM1154806 , GSM1154807 , GSM1154808 , GSM1154809
GSM1154810 ,
GSM1154811 ,
GSM1154812 ,
GSM1154813 ,
GSM1154814 ,
GSM1154815 ,
GSM1154816 ,
GSM1154817 ,
GSM1154818 ,
GSM1154819 ,
GSM1154820 ,
GSM1154821 ,
GSM1154822 ,
GSM1154823 ,
GSM1154824 ,
GSM1154825 ,
GSM1154826 ,
GSM1154827
Series (1)
GSE47690
Assignment of unknown contigs to chicken microchromosome 16 (GGA16)
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
PROBE_NAME
SEQUENCE
Probe Sequence
CONTROL_TYPE
Control type
GenBank
GenBankAccession
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
SPOT_ID
Spot identifier
DESCRIPTION
Description
Data table
ID
COL
ROW
PROBE_NAME
SEQUENCE
CONTROL_TYPE
GenBank
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
SPOT_ID
DESCRIPTION
1
266
170
GgaCGHBrightCorner
pos
--GgaCGHBrightCorner
2
266
168
DarkCorner
pos
--DarkCorner
3
266
166
DarkCorner
pos
--DarkCorner
4
266
164
DarkCorner
pos
--DarkCorner
5
266
162
DarkCorner
pos
--DarkCorner
6
266
160
DarkCorner
pos
--DarkCorner
7
266
158
DarkCorner
pos
--DarkCorner
8
266
156
DarkCorner
pos
--DarkCorner
9
266
154
DarkCorner
pos
--DarkCorner
10
266
152
DarkCorner
pos
--DarkCorner
11
266
150
DarkCorner
pos
--DarkCorner
12
266
148
14694
TACTAGCTGTAGCCTCTTCCAGTGGCAGTAGTCAGTCATTTCTGTCCTGTACTTCACTTC
FALSE
unmapped
13
266
146
37365
AACACTGCATCCTAAGTCACTAGAATTAACTTTGAAGTCAATCACAGAACATTCGCTGCT
FALSE
unmapped
14
266
144
23360
CTAGTAGAAAGCATTAGGAAGGCAAAGGTATGGGTCACACACAGCATGTATAGCAATCAT
FALSE
unmapped
15
266
142
43538
TCAATGACTTACTGCTGATGGCTAATGTATTTATTTGTTGGAGATAGTACAGGTTGTAAC
FALSE
unmapped
16
266
140
24232
GAGTGAAAGACAAAGCCTCCTCTGATGAAATAAAGACCTCCCAGAACCACCTCCAGTCTG
FALSE
unmapped
17
266
138
35844
CGTGTTGATAGTTATTATCATTGCCATGAATATAAACTGGTCAAGATCCTGCCATATAGC
FALSE
unmapped
18
266
136
5059
TTACGCTCCTGTGCTTCTGACATGCTAGACCATCTAATCAATGTAATCCAATTAGTCTGA
FALSE
unmapped
19
266
134
18808
CTGGTGGTGTATGACAGCACTAGAGACCCTCTTTGAAGTCTGAGCTTCGCTTTGCCTGGC
FALSE
unmapped
20
266
132
45952
CTCCCTTACTTAGTGACATTGCAGACCACCCAGAACTGACATGGCAGCAGGCACTGAGTT
FALSE
unmapped
Total number of rows: 45220 Table truncated, full table size 4393 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL17254_028412_D_GEO_20100512.txt.gz
442.4 Kb
(ftp) (http)
TXT
GPL17254_028412_D_GeneList_20100512.txt.gz
131.8 Kb
(ftp) (http)
TXT
GPL17254_028412_D_SequenceList_20100512.txt.gz
614.2 Kb
(ftp) (http)
TXT