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Platform GPL17964 Query DataSets for GPL17964
Status Public on Jan 30, 2014
Title Agilent-037305 SurePrint G3 Human Custom CGH Microarray 4x180K
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16037305 or 2537305.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Nov 19, 2013
Last update date Jan 30, 2014
Contact name Reinhard Ullmann
E-mail(s) ullmann@molgen.mpg.de
Phone 00493084131251
Organization name MPIMG
Department Human Molecular Genetics
Lab Molecular Cytogenetics
Street address Ihnestr.73
City Berlin
ZIP/Postal code 14195
Country Germany
 
Samples (12) GSM1274540, GSM1274541, GSM1537868, GSM1537869, GSM1537870, GSM1537871 
Series (4)
GSE41356 Distribution of segmental duplications in the context of higher order chromatin organisation of human chromosome 7
GSE63000 Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array with Agilent CGH array
GSE63003 Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
PROBE NAME
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
SPOT_ID Spot identifier

Data table
ID COL ROW PROBE NAME CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION SPOT_ID
1 532 340 HsCGHBrightCorner pos CONTROL
2 532 338 DarkCorner2 pos CONTROL
3 532 336 DarkCorner2 pos CONTROL
4 532 334 DarkCorner2 pos CONTROL
5 532 332 DarkCorner2 pos CONTROL
6 532 330 DarkCorner2 pos CONTROL
7 532 328 DarkCorner2 pos CONTROL
8 532 326 DarkCorner2 pos CONTROL
9 532 324 DarkCorner2 pos CONTROL
10 532 322 DarkCorner2 pos CONTROL
11 532 320 DarkCorner2 pos CONTROL
12 532 318 DarkCorner2 pos CONTROL
13 532 316 DarkCorner2 pos CONTROL
14 532 314 DarkCorner2 pos CONTROL
15 532 312 DarkCorner2 pos CONTROL
16 532 310 DarkCorner2 pos CONTROL
17 532 308 DarkCorner2 pos CONTROL
18 532 306 DarkCorner2 pos CONTROL
19 532 304 DarkCorner2 pos CONTROL
20 532 302 DarkCorner2 pos CONTROL

Total number of rows: 180880

Table truncated, full table size 27395 Kbytes.




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Supplementary data files not provided
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