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Platform GPL18173 Query DataSets for GPL18173
Status Public on Jan 16, 2014
Title Custom oligonucleotide CGH Microarray 4x44K designed by Genotypic Technology Private Limited (AMADID: 20515)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol www.chem.agilent.com
 
 
Submission date Jan 15, 2014
Last update date Jan 16, 2014
Contact name Hamid Band
E-mail(s) hband@unmc.edu
Organization name University of Nebraska Medical Center
Department Eppley
Street address 42nd and Emile
City Omaha
State/province Nebraska
ZIP/Postal code 68198
Country USA
 
Samples (12) GSM1309026, GSM1309027, GSM1309028, GSM1309029, GSM1309030, GSM1309031 
Series (1)
GSE54165 Custom array CGH of Oral Squamous Cell Cancer

Data table header descriptions
ID
Agilent Probe Name
GeneName Gene name
Chromosome Location Chromosome Location
Description Gene Description
Accession ID GenBank ID
GB_LIST
SEQUENCE

Data table
ID Agilent Probe Name GeneName Chromosome Location Description Accession ID GB_LIST SEQUENCE
12 A_16_P16131924 PPARG chr3:12315257-12315317 ref|Homo sapiens peroxisome proliferator-activated receptor gamma (PPARG), transcript variant 4, mRNA. ref|NM_005037|ref|NM_138712|ref|NM_138711 NM_005037, NM_138712, NM_138711 GTAAAAGAACCTCGATGTGATGATACCTTAGAGAATAGATCTACTGAGACTGATGCGTTT
13 A_16_P00684834 GOLGA4 chr3:37329998-37330058 ref|Homo sapiens golgi autoantigen, golgin subfamily a, 4 (GOLGA4), mRNA. ref|NM_002078 NM_002078 GGACATACGTTTCTTGGTAGGATTACACACCCATCTTGAAAACTGAGTTTTGTTTATAGT
14 A_16_P02442076 BX648236 chr11:45909946-45910004 gb|Homo sapiens mRNA; cDNA DKFZp686D02108 (from clone DKFZp686D02108). gb|BX648236 BX648236 AATCTGACACAATTTACTTCTGACAAGGCAAGATGAGAGAATGGTCTGAGTCTTTCAC
15 A_16_P16248286 PTPRG chr3:61737468-61737528 ref|Homo sapiens protein tyrosine phosphatase, receptor type, G (PTPRG), mRNA. ref|NM_002841 NM_002841 TCTGTAATTGTGTGTAACTGTGCTTCTTCTTGTGTATTAAAGTCCTCCCTGTCTTTAAGA
16 A_16_P00665778 chr3:23791065-23791125 chr3:23791065-23791125 Unknown ACACTCACATGACATTTAAGCCAAGTCTTTGTAAACTCTACTGTGAAGAAACTGCGAATC
17 A_16_P36211931 RBMS3 chr3:29711623-29711683 ref|Homo sapiens RNA binding motif, single stranded interacting protein (RBMS3), transcript variant 2, mRNA. ref|NM_014483|ref|NM_001003792|ref|NM_001003793 NM_014483, NM_001003792, NM_001003793 ACTCTTACTACTACTGTAGCAGTTTGTTCATATTAGGATCTCGCAGACTATCTAGAAGCA
18 A_16_P38669895 SLC24A2 chr9:19592359-19592419 ref|Homo sapiens solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (SLC24A2), mRNA. ref|NM_020344 NM_020344 CAGGATTTGAACCTTGTTCTAACATCCTTTTCACAAGTTTATATTGGAGAAGAAGCAGGT
19 A_16_P18702091 LOC375748 chr9:97763690-97763750 ref|Homo sapiens RAD26L hypothetical protein (LOC375748), mRNA. ref|NM_001010895 NM_001010895 TTGACTATATTTTTGTATGAAACTTCTGTATGACAAAGGAACTGCAAACCAAATTCAAAG
20 A_16_P16155895 chr3:22511013-22511073 chr3:22511013-22511073 Unknown TCCCTCAAAAGTTTGAAAGAAGAAAGAAGATACTACAAATTCCTTCAGTCAACCAGAAGT
21 A_16_P16192944 OXSR1 chr3:38202599-38202659 ref|Homo sapiens oxidative-stress responsive 1 (OXSR1), mRNA. ref|NM_005109 NM_005109 GGCAGGGGTTTAAAATCAGGAAAGAATAGTAGACAGCCTAGAAACCATAAAGAAGAAATA
22 A_16_P18577781 chr9:21669384-21669444 chr9:21669384-21669444 Unknown GGAAAAGAACCATTTTATTTTACCTGGTAAATAGACATTACAATCTACAGTGGTATGGGG
23 A_16_P18235533 SH2D4A chr8:19259034-19259093 ref|Homo sapiens SH2 domain containing 4A (SH2D4A), mRNA. ref|NM_022071 NM_022071 AGATTCAATCAATCGTATGAAGGCATATGCATTTCACCAGGTAAAAGACTTCCCTTCTG
24 A_16_P02519057 chr11:110624094-110624154 chr11:110624094-110624154 Unknown TTTCCACAATATAACTAACATATCATCTCCCCAGATTAGAAGTGAAACCACTAACCCTGA
25 A_16_P36194626 chr3:22631600-22631660 chr3:22631600-22631660 Unknown ACTTAGATTGACCTTGCTTAGACATACATGGTCACATTCCAACATAAACATGCTCATGTT
26 A_16_P18235122 chr8:19091523-19091583 chr8:19091523-19091583 Unknown TTGCCTATTGAATTCCAAATTTAACTTGTGTAAACTTAACTCTTGACCTCCACTTCTCCA
27 A_16_P00694604 ZNF167 chr3:44582447-44582507 ref|Homo sapiens zinc finger protein 167 (ZNF167), transcript variant 1, mRNA. ref|NM_018651|ref|NM_025169 NM_018651, NM_025169 CATGTGTAAGAAGAGGCAACCTCATAAGATGCACATGAATGATATCTATCCTCAAGCATT
28 A_16_P36165311 AB210008 chr3:10500224-10500275 gb|Homo sapiens mRNA for ATP2B2 variant protein, partial cds, clone: fg06458. gb|AB210008|gb|L20977|gb|M97260 AB210008, L20977, M97260 AAACCAGAATATCCTGAGTCTGATGAGCGATCTACCTGGAAGCCTCTTACT
29 A_16_P16146573 SATB1 chr3:18407435-18407495 ref|Homo sapiens SATB homeobox 1 (SATB1), mRNA. ref|NM_002971 NM_002971 AGCCATAGGTTTCCATTAAAAAGACATCAAGTAGGCATAACTGAATGAATGACATATGCT
30 A_16_P36177267 SH3BP5 chr3:15295116-15295176 ref|Homo sapiens SH3-domain binding protein 5 (BTK-associated) (SH3BP5), transcript variant 1, mRNA. ref|NM_004844|ref|NM_001018009 NM_004844, NM_001018009 TATCTCAGAACAAAGTTTCCTTTGAAAACATCTTCTGGAGAGAATTCCATTAAGCCCATT
31 A_16_P00696173 LIMD1 chr3:45684016-45684076 ref|Homo sapiens LIM domains containing 1 (LIMD1), mRNA. ref|NM_014240 NM_014240 TAATACCCAAACTTCTAGTCTAGCGTGTAGCATCTAGTATGTTTTTTGAAGAGAGCACCT

Total number of rows: 43029

Table truncated, full table size 8062 Kbytes.




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