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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 04, 2014 |
| Title |
Illumina Custom VeraCode GoldenGate Methylation Assay (GGMA) microarray |
| Technology type |
oligonucleotide beads |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Illumina |
| Manufacture protocol |
See manufacturer's website
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| Submission date |
Feb 04, 2014 |
| Last update date |
Feb 04, 2014 |
| Contact name |
William P Accomando |
| Organization name |
Harvard School of Public Health
|
| Department |
Epidemiology
|
| Street address |
Kresge Bldg 911, 677 Huntington Ave
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Samples (201)
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GSM1320640, GSM1320641, GSM1320642, GSM1320643, GSM1320644, GSM1320645
GSM1320646, GSM1320647, GSM1320648, GSM1320649, GSM1320650, GSM1320651, GSM1320652, GSM1320653, GSM1320654, GSM1320655, GSM1320656, GSM1320657, GSM1320658, GSM1320659, GSM1320660, GSM1320661, GSM1320662, GSM1320663, GSM1320664, GSM1320665, GSM1320666, GSM1320667, GSM1320668, GSM1320669, GSM1320670, GSM1320671, GSM1320672, GSM1320673, GSM1320674, GSM1320675, GSM1320676, GSM1320677, GSM1320678, GSM1320679, GSM1320680, GSM1320681, GSM1320682, GSM1320683, GSM1320684, GSM1320685, GSM1320686, GSM1320687, GSM1320688, GSM1320689, GSM1320690, GSM1320691, GSM1320692, GSM1320693, GSM1320694, GSM1320695, GSM1320696, GSM1320697, GSM1320698, GSM1320699, GSM1320700, GSM1320701, GSM1320702, GSM1320703, GSM1320704, GSM1320705, GSM1320706, GSM1320707, GSM1320708, GSM1320709, GSM1320710, GSM1320711, GSM1320712, GSM1320713, GSM1320714, GSM1320715, GSM1320716, GSM1320717, GSM1320718, GSM1320719, GSM1320720, GSM1320721, GSM1320722, GSM1320723, GSM1320724, GSM1320725, GSM1320726, GSM1320727, GSM1320728, GSM1320729, GSM1320730, GSM1320731, GSM1320732, GSM1320733, GSM1320734, GSM1320735, GSM1320736, GSM1320737, GSM1320738, GSM1320739, GSM1320740, GSM1320741, GSM1320742, GSM1320743, GSM1320744, GSM1320745, GSM1320746, GSM1320747, GSM1320748, GSM1320749, GSM1320750, GSM1320751, GSM1320752, GSM1320753, GSM1320754, GSM1320755, GSM1320756, GSM1320757, GSM1320758, GSM1320759, GSM1320760, GSM1320761, GSM1320762, GSM1320763, GSM1320764, GSM1320765, GSM1320766, GSM1320767, GSM1320768, GSM1320769, GSM1320770, GSM1320771, GSM1320772, GSM1320773, GSM1320774, GSM1320775, GSM1320776, GSM1320777, GSM1320778, GSM1320779, GSM1320780, GSM1320781, GSM1320782, GSM1320783, GSM1320784, GSM1320785, GSM1320786, GSM1320787, GSM1320788, GSM1320789, GSM1320790, GSM1320791, GSM1320792, GSM1320793, GSM1320794, GSM1320795, GSM1320796, GSM1320797, GSM5960767, GSM5960768, GSM5960769, GSM5960770, GSM5960771, GSM5960772, GSM5960773, GSM5960774, GSM5960775, GSM5960776, GSM5960777, GSM5960778, GSM5960779, GSM5960780, GSM5960781, GSM5960782, GSM5960783, GSM5960784, GSM5960785, GSM5960786, GSM5960787, GSM5960788, GSM5960789, GSM5960790, GSM5960791, GSM5960792, GSM5960793, GSM5960794, GSM5960795, GSM5960796, GSM5960797, GSM5960798, GSM5960799, GSM5960800, GSM5960801, GSM5960802, GSM5960803, GSM5960804, GSM5960805, GSM5960806, GSM5960807, GSM5960808, GSM5960809
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| Series (3) |
| GSE54647 |
VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples |
| GSE54671 |
Quantitative reconstruction of leukocyte subsets using DNA methylation |
| GSE198925 |
MLID imprinting disorders |
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| Data table header descriptions |
| ID |
|
| SYMBOL |
|
| GB_ACC |
GenBank Accession number |
| CHROMOSOME |
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| CPG_COORDINATE |
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| CPG_ISLAND |
|
| REFSEQ |
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| SEQUENCE |
INPUT_SEQUENCE |
| Data table |
| ID |
SYMBOL |
GB_ACC |
CHROMOSOME |
CPG_COORDINATE |
CPG_ISLAND |
REFSEQ |
SEQUENCE |
| cd3zDMR |
CD3Z |
NM_000734.2 |
1 |
NA |
TRUE |
37.1 |
GATGAAGTGGAAGGCGCTTTTCACCG[CG]GCCATCCTGCAGGCACAGTTGCCGATT |
| foxp3DMR1in |
FOXP3 |
NM_014009.2 |
X |
NA |
TRUE |
37.1 |
ATGGCGGAAAAATCTGGGCAAGT[CG]GGGGCTGTGACAACAGGG |
| foxp3DMRpro |
FOXP3 |
NM_014009.2 |
X |
NA |
TRUE |
37.1 |
TTCCACACCGTACAGCGTGGTTTTTCTTCT[CG]GTATAAAAGCAAAGTTGTTTTTGATAC |
| cg00071250 |
FASLG |
NM_000639.1 |
1 |
170894886 |
FALSE |
37.1 |
CCTGTAGAGGCTGAGGTGTCAAGGA[CG]GGACCCTGTTGCTGACTGCT |
| cg00226923 |
FGD2 |
NM_173558.2 |
6 |
37080005 |
FALSE |
37.1 |
GCCTGAGCCTCGGTGCTCTTGGTA[CG]TGAAGTGCCTGGAACAGCTTCACG |
| cg00431549 |
MGP |
NM_000900.2 |
12 |
14930292 |
FALSE |
37.1 |
CCAGGTCTGTCCCCAAGCATA[CG]ATGGCCAAAACTTCTGCACCAGAGCA |
| cg00491404 |
EPS8L3 |
NM_024526.2 |
1 |
110108114 |
FALSE |
37.1 |
TGCCTTTGATGAGGTTACAGAGGCAGCCA[CG]CCTGTGCTCTTTGGACTCTG |
| cg00546897 |
LOC284837 |
NM_194310.1 |
21 |
44056660 |
FALSE |
37.1 |
AACGCTGCAATCCTGGGAAGAGTCACACG[CG]CCCTCCCGGGACCCACGTGACC |
| cg00554250 |
NR1H3 |
NM_005693.1 |
11 |
47237946 |
FALSE |
37.1 |
CCTGGGCCTGGCTGCTTGCATCCTGTG[CG]CCTGGCTTCCACAGCTCCACCGC |
| cg00620024 |
PPP6C |
NM_002721.3 |
9 |
126992712 |
TRUE |
37.1 |
TTGTCTATTTTGTTCACGAAGTACTGCAAG[CG]CCTTGAGCTGTACCTGGCACATCTTT |
| cg00673191 |
DOPEY2 |
NM_005128.2 |
21 |
36458793 |
FALSE |
37.1 |
AACCCAGAGCTACAGAAGACA[CG]TGTCCACAAACACAACTGTGCACAAAC |
| cg00739120 |
NIFIE14 |
NM_032635.2 |
19 |
40727715 |
TRUE |
37.1 |
GTCCATCTTCGATGCTAAGGCCGGCATTG[CG]CTCAATGACAATTTCGTGAAGCTCATT |
| cg00795812 |
PDCD1 |
NM_005018.1 |
2 |
242450682 |
TRUE |
37.1 |
TCGGTTATTTTAAGCTGATGAGCCTGA[CG]CATCTCATCACTAATATCAGCAGTTTCATT |
| cg00899659 |
ZNF22 |
NM_006963.3 |
10 |
44815977 |
FALSE |
37.1 |
GAAATGTGCTCCGTTCACCGTGTGTAAG[CG]GACGACCCAGAATTGGAATGG |
| cg01031251 |
RPS6KA1 |
NM_001006665.1 |
1 |
26728010 |
TRUE |
37.1 |
AGGGCAGAGCACAGATTGCAAAAA[CG]CATATTAAGAAATCACTCTTGGCCGGGCGC |
| cg01124420 |
EDAR |
NM_022336.1 |
2 |
108971950 |
FALSE |
37.1 |
AGTACCTGCTTCTGAGAGGGCTGCCA[CG]GTGGCCACCTGTGAAGCCTGT |
| cg01182697 |
TMEM59 |
NM_004872.3 |
1 |
54293020 |
FALSE |
37.1 |
GAATAACAACGAAGGGGACTTGTCCTA[CG]AGCTAGCACACATGGTGTAAACCGGAG |
| cg01278291 |
DOK3 |
NM_024872.1 |
5 |
176869969 |
FALSE |
37.1 |
AAGGCCCTCACGGTATACACTCA[CG]CTGGGCATCCAGTCCACATGGGACC |
| cg01344171 |
C6orf206 |
NM_152732.2 |
6 |
43720625 |
TRUE |
37.1 |
TCATCCTTTCCAGAGTTTGGGA[CG]GGATGTCTTCAGTTGCCACGGCCACA |
| cg01441777 |
CSNK1E |
NM_001894.4 |
22 |
37044362 |
TRUE |
37.1 |
CCAGGAACTGTGCTTCCGGGATTGGA[CG]CAGGGCCTCAGGCATTTTGCGTGTCCA |
Total number of rows: 96
Table truncated, full table size 10 Kbytes.
| Supplementary data files not provided |
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