 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 21, 2014 |
| Title |
NimbleGen Human 6x630K CGH Whole Genome tiling array [100710_HG19_WG_CGH_PERF_UX6] |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Roche NimbleGen Inc. |
| Manufacture protocol |
See www.nimblegen.com
|
| |
|
| Description |
Build: HG19
|
| |
|
| Submission date |
Feb 21, 2014 |
| Last update date |
Feb 21, 2014 |
| Organization |
NimbleGen Systems, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
|
| Phone |
608-218-7600
|
| URL |
http://www.nimblegen.com/
|
| Street address |
504 S. Rosa Road
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53719 |
| Country |
USA |
| |
|
| Samples (44)
|
GSM1335320, GSM1335321, GSM1335322, GSM1548603, GSM1548604, GSM1548605
GSM1548606, GSM1548607, GSM1548608, GSM1548609, GSM1548610, GSM1548611, GSM1548612, GSM1548613, GSM1548614, GSM1548615, GSM1548616, GSM1548617, GSM1548618, GSM1548619, GSM1548620, GSM1548621, GSM1548622, GSM1548623, GSM1548624, GSM1548625, GSM1602436, GSM1602443, GSM1602444, GSM1602449, GSM2073178, GSM2073179, GSM2073180, GSM2073181, GSM2073182, GSM2073183, GSM2073184, GSM2073185, GSM3736978, GSM3736979, GSM3736993, GSM3736994, GSM3736995, GSM3736996
|
| Series (7)
|
| GSE46848 |
The distribution of genomic variations in human iPSCs is related to replication timing reorganization during reprogramming |
| GSE55397 |
The distribution of genomic variations in human iPSCs is related to replication timing reorganization during reprogramming [NimbleGen] |
| GSE63428 |
Distinct classes of genes behave as either drivers or dependents of replication timing switches (Replication-Timing). |
| GSE65649 |
Genetic characterization of T-PLL reveals two major biologic subgroups and JAK3 mutations as prognostic marker |
| GSE78717 |
Influence of ATM-mediated DNA damage response on genomic variation in human induced pluripotent stem cells (NimbleGen CNV) |
| GSE130372 |
Replication timing alterations in leukemia reflect stable clinically-relevant changes in genome architecture [Repli-Chip] |
| GSE130374 |
Replication timing alterations in leukemia reflect stable clinically-relevant changes in genome architecture |
|
| Data table header descriptions |
| ID |
PROBE_ID (NimbleGen probe identifier) from .pos file |
| SEQ_ID |
|
| CHROMOSOME |
Chromosome number |
| RANGE_GB |
Chromosome ACCESSION.VERSION |
| RANGE_START |
POSITION. Probe start position relative to the RANGE_GB accession. |
| RANGE_END |
Probe end position relative to the RANGE_GB accession. |
| SEQUENCE |
Probe sequence |
| Data table |
| ID |
SEQ_ID |
CHROMOSOME |
RANGE_GB |
RANGE_START |
RANGE_END |
SEQUENCE |
| CHR01FS000767570 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
767570 |
767619 |
AAAGTGGTTCCAAAACGACAAGCATCCTGTAAAGTCGGAAGAGCTGTGTC |
| CHR01FS000784721 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
784721 |
784770 |
ATTCTACAACGTGCTATTGTGAAGCCATCCGGGACTGTTCACTCACTCAT |
| CHR01FS000790022 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
790022 |
790071 |
AAACGTCTTACCACGGAATTCCACAGCGTACCAAGCGATTCCACAGCTTG |
| CHR01FS000800071 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
800071 |
800120 |
GGCTATTTCTGACGTTCATTCAGAATGCCACCTAACTAGGCCAGTTTTTG |
| CHR01FS000821462 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
821462 |
821511 |
TCCTCTGGGAGTACTATCCAAGTGGGTACCGACTTGACGTCAGCTGGAAC |
| CHR01FS000836196 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
836196 |
836245 |
AAGTGCCACGCTAATGTAACACGTTAGTACCAGCGTAACTGGGTGCCAGG |
| CHR01FS000836935 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
836935 |
836984 |
ACTCACAGGACATATGACGCATTTGCAACATGCGTTCTCAAAGTGGGAGC |
| CHR01FS000894378 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
894378 |
894427 |
TGTGGAGAATTTTCGGACTCGGATTCGGACTCGGAGTCAAAGCCCGAAGC |
| CHR01FS000919892 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
919892 |
919941 |
GATCCATGAGCAACCATCGCATGCCGGGTACAGCCGCAAACAATGTACAC |
| CHR01FS000942445 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
942445 |
942494 |
GGATCACGTAGAGACGTGTAGAGACGCGACGAAGCACGAAGACCCGTGTT |
| CHR01FS000946071 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
946071 |
946120 |
ACAACCTGCACAGATGCGTCCACCAACACGGATAGATGCGTGTTTTTGTT |
| CHR01FS001028771 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
1028771 |
1028820 |
CAATAAACCACATCCGTGTAAAGTACACAAGCGGGTGAGTGTGACCACCC |
| CHR01FS001030842 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
1030842 |
1030902 |
CATGTTCCGATAGTTTGCTGCTACTATATAACGATAAACTTTGCACCTTAGCCTTGATATC |
| CHR01FS001035950 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
1035950 |
1036003 |
GGCAAGTGTATAATGACACTATCGTTGGATTTCAGGTCTACCGTTTTTACCGTT |
| CHR01FS001047171 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
1047171 |
1047220 |
CCACTGCATCCGTGTAGCTAATGCTGGTCATCTTCGTAGCAAGCAAAGGA |
| CHR01FS001090827 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
1090827 |
1090876 |
CATATCTTTGCGAGACTGGTTATCTTCGACGGCGTGCTGGTCATTGTACT |
| CHR01FS001097279 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
1097279 |
1097328 |
CTCTCTGCTGGTCGGGCTAATTACAGACCGTTTGTCGTTTCATTATGGGC |
| CHR01FS001109991 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
1109991 |
1110040 |
CAAGTCCCACCGCTATAAAGGACACGTCAGTCAGCATCTCGGAGTGAGAC |
| CHR01FS001131666 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
1131666 |
1131718 |
CTTACCAAGATTCGAGATTTTACGTATCCCATTTGCTATCCGTCTCTTCTGCT |
| CHR01FS001156856 |
chr1:1-249250621 |
chr1 |
NC_000001.10 |
1156856 |
1156905 |
GCTGGTCACATGATATGGGCCGTTCCTGGCAGGAACGTATCTTACACCTT |
Total number of rows: 630063
Table truncated, full table size 77442 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL18318_100710_HG19_WG_CGH_PERF_UX6.ncd.gz |
283 b |
(ftp)(http) |
NCD |
| GPL18318_100710_HG19_WG_CGH_PERF_UX6.ndf.gz |
35.2 Mb |
(ftp)(http) |
NDF |
| GPL18318_100710_HG19_WG_CGH_PERF_UX6.pos.gz |
4.8 Mb |
(ftp)(http) |
POS |
| GPL18318_100710_HG19_WG_CGH_PERF_UX6_probe_locations.gff.gz |
4.9 Mb |
(ftp)(http) |
GFF |
|
|
|
|
 |
Less...
More...