GEO help: Mouse over screen elements for information.
Status
Public on Sep 01, 2014
Title
020940_IRD_RHIZO-CASUARINA-15K-V1.0
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Casuarina glauca Manufacturer
IMAXIO - Biopôle Clermont-Limagne- 63360 Saint-Beauzire, France- Tél: +33 (0)4 73 64 43 90 – Contact : V. VIDAL. This platform is Certified Service Provider by AGILENT.
Manufacture protocol
Agilent protocol
Submission date
Mar 04, 2014
Last update date
Sep 01, 2014
Contact name
Valérie HOCHER
E-mail(s)
valerie.hocher@ird.fr Organization name
IRD
Department
DIADE
Lab
RHIZO
Street address
911 av. Agropolis BP64501
City
MONTPELLIER CDX 5
ZIP/Postal code
34394
Country
France
Samples (4)
GSM1339604 , GSM1339605 , GSM1339606 , GSM1339607 Series (1)
GSE55582 Gene profiling during symbiosis between the actinorhizal tree Casuarina glauca and the actinobacteria Frankia CcI3 after treatment with 1-naphtoxy acetic acid, an auxin influx inhibitor.
Data table header descriptions ID CLUSTER_COMPOSITION List of EST composing the clusters
GB_LIST SEQUENCE EST or contig sequence (added for sequences which were hybridized on microarray but that where not of enough quality for EMBL submission acceptation)
BLAST Blast result (first blast hit)
GO_IDS Gene Ontology Indentifier
GO_SCORE GO score
SPOT_ID
Data table ID CLUSTER_COMPOSITION GB_LIST SEQUENCE BLAST GO_IDS GO_SCORE SPOT_ID CGCL1000Contig1
CG-R02f_005_O18,CG-N02f_021_A23,CG-R02f_018_D02,CG-J02f_004_G11,CG-N02f_038_J07,
FQ361390 , FQ322171 , FQ370481 , FQ325900 , FQ318284 C:GO:0012505 C:GO:0005739
2
CGCL1001Contig1
CG-N02f_002_L02,CG-R02f_033_A07,CG-R02f_027_G22,CG-R02f_030_I10,CG-R02f_019_D22,
FQ366299 , FQ368191 , FQ369019 , FQ368580 , FQ370306 germinlike protein 5
0
CGCL1002Contig1
CG-R02f_001_N10,CG-J04f_005_B02,CG-J04f_005_E05,CG-R02f_023_A17,CG-R02f_019_N21,
FQ361995 , FQ325544 , FQ325529 , FQ369686 , FQ370211 ATCAAATCCCACACAAATGTGGACCTGAGGGTCCTTTCGTACTACCCAGGTAAAAACTATAGTATCTGCAGATAGAAGCCGACCTGCCTCACGGCGGTCTGAACTCAAATCATGTGGGGTTTTAATAGTCGAACAGACTAATGAACCTGACTCTTGCGCCATGGCCACACCCCCAATTCAACATCGAGGTCGCAATCAGCTGTTTAAATAAGAACTAAAAACAACTATAACGCTGTTAACCCCGCAGTAATTTTAAACTCTTAAAAATCTTAGTCTATGTGCCGATCGAACCGGCACGGTTACCCCAACCAAATCTTGTTTACAGCTTTTTGTGCTGTTAAACCAGATCAAACTTGACAGGGTCTTCTTGTCACGCAGAGACTCGCTGGCATCTTCACCAGCAATTAAATTTACACGAACTGCCGCTGATACAGCCAACCCCCAAACAACCTTTCATTCCATTCCCTAATTAAGAGACTAGTTATTATGCTACCTTAGTACAGTCAAAATACTGCAGCCATTCAGAAAATCCATTGGGCAGGCTACACTATGCATATATCACATAGCTATGTTTTTGTTAAACAGTTGAGAGTTGTGTTGCCGAGTTCATAAGCGACAATTAATTAAAACAGCTTAGTTAGCTGCCAAATAGTACTAATTCATCGATTAATATTTAGCCATGTTTTGACTAAAACCGCAGGTGAAAATATTCGAAAGTAAATTTTAATATATTATCTATAACGAAAAACTAAATTAGGCTGCTTAAAAGCCATACTTTAAAAATTTAAATTAGAATAATTCAACTCGGCACCAGTTTATCCGGGTGCCGACCATTACCAGCATTCGCTGTGCTAACCTATCCCGACGGAACCAGATATCATCTGTTACGGATAAAAGTTCTCCTCAAGTTTAGAATAAAAAGATACTAATGAAACAGTATCAAACCTACCAAACTAGATCAACAGACTTCGGGAAATTTAAATCTTTAAATTTTTCCGACGACCATTATGCCAAAAGTATAAAAATTACATACTAGCTTAAAATAAACCCTCACGGTTCAATTTTAATATAAGCCCC
0
CGCL1003Contig1
CG-N02f_023_E23,CG-R02f_011_A08,CG-R02f_011_A12,CG-R02f_049_O13,CG-R02f_025_A09,
FQ363963 , FQ371526 , FQ371524 , FQ376313 , FQ369373 glycinerich rnabinding protein
F:GO:0003676 F:GO:0000166
2
CGCL1004Contig1
CG-N02f_008_H20,CG-N02f_012_I22,CG-R01f_009_E07,CG-R02f_008_E05,CG-R02f_042_N06,
FQ314233 , FQ313238 , CO037136.1 , FQ371931 , FQ366646 at1g33800 f14m2_23
C:GO:0012505
1
CGCL1005Contig1
CG-R02f_004_O06,CG-R02f_001_M19,CG-R02f_009_J06,CG-R02f_011_H08,CG-N02f_019_J19,
FQ361544 , FQ362002 , FQ371729 , FQ371469 , FQ364370 peroxisomal membrane protein(22kda)
0
CGCL1006Contig1
CG-N02f_004_A03,CG-N02f_025_G14,CG-N02f_032_K21,CG-R02f_005_A18,CG-N02f_028_H05,
FQ315232 , FQ321110 , FQ319586 , FQ375877 , FQ320352 fiber protein fb11
C:GO:0016023 C:GO:0005739
2
CGCL1007Contig1
CG-N02f_001_F23,CG-N02f_015_I19,CG-N02f_037_N16,CG-N02f_002_O10,CG-N02f_037_A13,
FQ315872 , FQ312489 , FQ318432 , FQ315501 , FQ318616 0
CGCL1008Contig1
CG-N02f_001_N13,CG-N02f_024_P11,CG-N02f_040_P22,CG-R02f_006_P03,CG-R02f_039_N16,
FQ315766 , FQ321227 , FQ317750 , FQ361232 , FQ367157 atpdil21 mee30 une5 (pdilike 21) thioldisulfide exchange intermediate
P:GO:0045454 C:GO:0005783 F:GO:0016853
3
CGCL1009Contig1
CG-R02f_029_G01,CG-J02f_003_I24,CG-J02f_006_B05,CG-R02f_030_A11,CG-N02f_002_O18,
FQ368735 , FQ326955 , FQ326466 , FQ368645 , FQ366271 probable plasma membrane intrinsic protein 1c
P:GO:0006810 C:GO:0016021 F:GO:0005215
3
CGCL100Contig1
CG-N02f_034_I13,CG-R02f_007_J16,CG-R02f_021_G11,CG-R02f_009_D19,CG-N02f_018_I15,CG-N02f_008_P02,CG-N02f_025_B24,CG-R02f_024_N03,CG-N02f_025_M02,CG-N02f_039_H18,CG-N02f_036_B07,CG-N02f_041_A17,CG-R02f_014_P18,CG-N02f_028_J04,CG-R02f_012_K21,CG-R02f_045_A15,CG-R02f_028_P12,CG-N01f_013_H01,CG-N01f_005_B04,CG-N01f_002_B08,CG-N02f_004_A16,CG-R02f_006_C08,CG-R02f_032_G17,CG-N02f_036_B05,CG-R02f_044_B08,
FQ319169 , FQ372023 , FQ369956 , FQ371782 , FQ322773 , FQ314127 , FQ321188 , FQ369407 , FQ321017 , FQ318081 , FQ318821 , FQ317735 , FQ370948 , FQ320318 , FQ371297 , FQ377126 , FQ368794 , CO038669.1 , CO038537.1 , CO038453.1 , FQ315226 , FQ361358 , FQ368277 , FQ318822 , FQ377301 60s ribosomal protein l37a
C:GO:0005840 F:GO:0003735 F:GO:0008270 P:GO:0006412 C:GO:0005739
5
CGCL1010Contig1
CG-N01f_005_D10,CG-N02f_004_I17,CG-N01f_006_A01,CG-N02f_017_N23,CG-N02f_025_K18,
CO038508.1 , FQ315137 , CO038326.1 , FQ322923 , FQ321037 at1g77350 f2p24_6
C:GO:0012505
1
CGCL1011Contig1
CG-N02f_001_H13,CG-R02f_029_N14,CG-R02f_041_D07,CG-R02f_047_B21,CG-R02f_023_K15,
FQ366427 , FQ368670 , FQ366907 , FQ376788 , FQ369584 miox4 (myoinositol oxygenase 4)
F:GO:0050113
1
CGCL1012Contig1
CG-N02f_009_J14,CG-R02f_039_O17,CG-N02f_016_H06,CG-R02f_015_K20,CG-R02f_003_H19,
FQ313964 , FQ372179 , FQ312307 , FQ370864 , FQ361744 rna polymerase beta subunit
F:GO:0003899 P:GO:0006351 F:GO:0003677 C:GO:0009507
4
CGCL1013Contig1
CG-J02f_003_D11,CG-J02f_003_K05,CG-N02f_009_J05,CG-N02f_019_I12,CG-J02f_005_D11,
FQ327028 , FQ326942 , FQ313970 , FQ322530 , FQ326639 0
CGCL1014Contig1
CG-N02f_003_F15,CG-N02f_023_K24,CG-R02f_006_M04,CG-N02f_029_C17,CG-R02f_049_N17,
FQ315389 , FQ321533 , FQ361262 , FQ320171 , FQ376322 signal peptidase
C:GO:0005792 P:GO:0006465 C:GO:0016021 F:GO:0009003 C:GO:0005787
5
CGCL1015Contig1
CG-J07f_003_F19,CG-J07f_006_F01,CG-J07f_004_M15,CG-J07f_003_L15,CG-J07f_006_N12,
FQ324449 , FQ323617 , FQ324044 , FQ324347 , FQ323458 ACTTGAAAAAATACATAATTTTTTCACTTGCAAATGGAGAGATGAAAAAATAACATGTGAGTTGAGGACCCTTCAGAAAAGTATCCATGATTTGATAGCATAATGATAAGACAGATAAACCTCAACCTTGATAAATCTATACATGACTAGAGCTTGAAACATAGTATAGCTTAGAAGAAACATTGTTCAAAGCTCAATGTAGCTGTGCCTATATCTAATAAGCGCCTTCTGGGATTATAACAAGCAAAAAGGCTGAGAAACATGATATTACAACATGAATACACAACTTAAAGCGCATGATAACTTCAGATTGGGGAATGGACGATTTCCAGCAGGAGCCAAGATGCATTTCACAGTCGAACCACCCTTGGAAGTAGAACTCGTAGGAGTTGAATTCTATTATGACCAACTCAATCAAAACCTTGTTCCACTTCTATAGTTGGCAGCAGGACATCGATAGATTTTGCATACTGCTGAAACTGCAACAAGCCATACGGCATTGGACCATTGCCAGTTCAACAACTCTTTCACAATCTCTTCAGATTTATGAATTAACTCCTG
0
CGCL1016Contig1
CG-J07f_001_O20,CG-J07f_005_H09,CG-J07f_004_L16,CG-J07f_003_L03,CG-J07f_006_O21,
FQ324872 , FQ323864 , FQ324060 , FQ324356 , FQ323431 arystal structure of the gdpmannosedehydratase ternary complex with nadph and gdp
F:GO:0008446 P:GO:0009826
2
CGCL1017Contig1
CG-N02f_010_E01,CG-R02f_040_C06,CG-R02f_039_J16,CG-J02f_003_K15,CG-N02f_027_J15,
FQ313800 , FQ367109 , FQ367195 , FQ325984 , FQ320571 md2related lipid recognition domaincontaining protein ml domaincontaining protein
C:GO:0012505 F:GO:0003674 P:GO:0008150
3
CGCL1018Contig1
CG-N02f_007_C07,CG-R02f_013_G01,CG-N02f_020_F14,CG-R02f_015_M04,
FQ314562 , FQ371192 , FQ322332 , FQ370850 hydrophobic low temperature and salt responsive
C:GO:0012505 C:GO:0016023 C:GO:0016021 P:GO:0042538
4
14543 1930 Kbytes .Supplementary data files not provided
