 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 11, 2005 |
| Title |
ATH whole genome chip 13 |
| Technology type |
in situ oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Arabidopsis thaliana |
| |
|
| Description |
36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
|
| |
|
| Contributor(s) |
Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich E, Zhao Q, Wrobel RL, Newman C, Fox B, Phillips G, Markley J, Sussman MR |
| Submission date |
Feb 05, 2005 |
| Last update date |
Jun 16, 2005 |
| Contact name |
Waraporn Tongprasit |
| E-mail(s) |
wtongprasit@mail.arc.nasa.gov
|
| Phone |
1-650-604-4779
|
| URL |
http://phenomorph.arc.nasa.gov
|
| Organization name |
NASA Ames Research Center
|
| Department |
|
| Lab |
NASA Ames Genome Research Facility
|
| Street address |
|
| City |
Moffett Field |
| State/province |
CA |
| ZIP/Postal code |
94043 |
| Country |
USA |
| |
|
| Samples (1) |
GSM41336 |
| Series (1) |
| GSE2247 |
Arabidopsis Whole Genome 36-mer |
|
| Data table header descriptions |
| ID |
|
| X |
X coordinate of the array feature |
| Y |
Y coordinate of the array feature |
| SEQUENCE |
DNA sequence of oligonucleotide |
| CHROMOSOME |
Chromosome name/number |
| POSITION |
Position of oligonucleotide on the chromosome sequence |
| STRAND |
Strand of probe ('+' = Sense, '-' = Antisense) |
| FREQUENCY |
Average frequency of probe in the genome |
| PROBE_TYPE |
Type of probe (EXPERIMENT = probe from genome sequence, CONTROL = control probe for synthesis process and grid alignment) |
| Data table |
| ID |
X |
Y |
SEQUENCE |
CHROMOSOME |
POSITION |
STRAND |
FREQUENCY |
PROBE_TYPE |
| 1.1 |
1 |
1 |
TGCCTAATAGTGTAACATTCCCTTTATTATAATATA |
5 |
12627313 |
- |
2.200000 |
EXPERIMENT |
| 1.3 |
1 |
3 |
TTTTAAATGAAAAAAGTTATTTGACGTTAGGTCTGT |
5 |
19141831 |
- |
1.050000 |
EXPERIMENT |
| 1.5 |
1 |
5 |
CCAGTTGACCAAACCTGATGTAATCTTCTAAATCCT |
5 |
10344863 |
- |
1.000000 |
EXPERIMENT |
| 1.7 |
1 |
7 |
TGCCATCGCGATTTCTTGGTCTCTGTCCAAAAGTCC |
5 |
11068917 |
- |
2.200000 |
EXPERIMENT |
| 1.9 |
1 |
9 |
CAACTTAAAATATGGTTATAAATGATGACAATTTTA |
5 |
14610946 |
- |
1.100000 |
EXPERIMENT |
| 1.11 |
1 |
11 |
CCATATAATTTTCATCAGGTATACCACCTCTCTCCA |
5 |
10647875 |
- |
1.000000 |
EXPERIMENT |
| 1.13 |
1 |
13 |
TAGACATTCAAACGCAAAATTCAAACAATTGGTGTC |
5 |
21345457 |
- |
1.000000 |
EXPERIMENT |
| 1.15 |
1 |
15 |
CAATATAGGCTCTAGCGGATATGATGGCCAAGAAAT |
5 |
21371529 |
- |
1.000000 |
EXPERIMENT |
| 1.17 |
1 |
17 |
AATTCAGAATTTAAATGAAGACTTAGCTTTTCATTG |
5 |
10407097 |
- |
1.300000 |
EXPERIMENT |
| 1.19 |
1 |
19 |
GGAAGGGCTTCTAAGAAGTCACGTACTGTCTTGCCA |
5 |
4351352 |
- |
1.000000 |
EXPERIMENT |
| 1.21 |
1 |
21 |
AATGCATTCAGGGCTCAAGGTAAGATTCTCCACCAA |
5 |
8284713 |
- |
1.000000 |
EXPERIMENT |
| 1.23 |
1 |
23 |
AAACACCCATCTAACTTATCTAGTTTTGCAATTTTA |
5 |
14090433 |
- |
4.800000 |
EXPERIMENT |
| 1.25 |
1 |
25 |
GGATTTACAGTCTAGACAAAATGTAATCAGTTTAGA |
5 |
2771454 |
- |
1.000000 |
EXPERIMENT |
| 1.27 |
1 |
27 |
AACTTGGTCTTGCATTATTAAATCAAAGCCAACAAC |
5 |
18824155 |
- |
1.000000 |
EXPERIMENT |
| 1.29 |
1 |
29 |
ACAAGCCTGAAAGTTTAGCGGGAGACTCAAACCCGA |
5 |
8466086 |
- |
1.000000 |
EXPERIMENT |
| 1.31 |
1 |
31 |
TTACATAAATGCAAATAAAGATGTGTTTGACTTGTA |
5 |
8891942 |
- |
1.050000 |
EXPERIMENT |
| 1.33 |
1 |
33 |
TTAGATCATCTTTCTTATGAAATCCATAAAAGATCT |
5 |
3232136 |
- |
1.000000 |
EXPERIMENT |
| 1.35 |
1 |
35 |
AACCGATCGTTAGTAAGGTGCACTTAATTTATACAC |
5 |
10968025 |
- |
2.650000 |
EXPERIMENT |
| 1.37 |
1 |
37 |
ACTCCTAAGCTAAAATAAAACAAATATACGGGGAAG |
5 |
5684591 |
- |
1.600000 |
EXPERIMENT |
| 1.39 |
1 |
39 |
CTGGTCGAGTAGATTGTTCTGCTGCTTCCCTCCTGG |
5 |
13022253 |
- |
2.800000 |
EXPERIMENT |
Total number of rows: 390732
Table truncated, full table size 32477 Kbytes.
| Supplementary data files not provided |
|
|
|
|
 |
