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Platform GPL18545 Query DataSets for GPL18545
Status Public on Apr 08, 2014
Title Illumina HumanExome-12 v1.1 BeadChip
Technology type oligonucleotide beads
Distribution commercial
Organism Homo sapiens
Manufacturer Illumina Inc.
Manufacture protocol see manufacturer's website
 
Description HumanExome-12v1-1_A.bpm
coverage of putative functional exonic variants selected from over 12,000 individual exome and whole-genome sequences

The exonic content consists of > 250,000 markers representing diverse populations—including European, African, Chinese, and Hispanic individuals—and a range of common conditions, such as type 2 diabetes, cancer, metabolic, and psychiatric disorders.

HumanExome BeadChips deliver focused coverage of exonic regions, but do not include coverage outside of coding regions. Researchers can use these arrays to obtain new insights from previously genotyped cohorts, or run new studies focused on identifying functionally relevant associations.

 
Submission date Apr 08, 2014
Last update date Apr 08, 2014
Organization Illumina Inc.
E-mail(s) expression@illumina.com, techsupport@illumina.com
Phone 1 800 809 4566
URL http://www.illumina.com
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Samples (5997) GSM1497150, GSM1497151, GSM1497152, GSM1497153, GSM1497154, GSM1497155 
Series (4)
GSE61129 Exonic variants associated with development of Aspirin Exacerbated Respiratory Diseases
GSE148375 An Exome-Wide Association Study Identifies New Susceptibility Loci for the Risk of Nicotine Dependence in African-American Populations
GSE148812 An Exome-Wide Association Study Identifies New Susceptibility Loci for the Risk of Nicotine Dependence in European-American Populations

Data table header descriptions
ID
Name
IlmnStrand
SNP
SPOT_ID
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
BeadSetID
Exp_Clusters
RefStrand

Data table
ID Name IlmnStrand SNP SPOT_ID AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID Exp_Clusters RefStrand
exm-IND1-200449980-0_M_R_1990486447 exm-IND1-200449980 MINUS [D/I] exm-IND1-200449980 69606251 CTGTGGAACTTTCCGGAGCTCGGCACCCTTCCCCCAAGCCTACCTGGGCG 37.1 1 202183358 diploid Homo sapiens 1000genomes 0 PLUS GAGGGCCGCTCAGCGAGGGCGGGACAGAACCTCTCCCGGGCTGGGAGTGCACGGCGCGGT[-/G]CGCCCAGGTAGGCTTGGGGGAAGGGTGCCGAGCTCCGGAAAGTTCCACAGGTCCTCCGCA GAGGGCCGCTCAGCGAGGGCGGGACAGAACCTCTCCCGGGCTGGGAGTGCACGGCGCGGT[-/G]CGCCCAGGTAGGCTTGGGGGAAGGGTGCCGAGCTCCGGAAAGTTCCACAGGTCCTCCGCA 662 3 -
exm-IND1-201453487-0_M_R_1990486448 exm-IND1-201453487 MINUS [D/I] exm-IND1-201453487 3775555 TCCTGCAACCAGGGCCGATACCCCCTCATCCAGACGCTACGGCAGGAACT 37.1 1 203186865 diploid Homo sapiens 1000genomes 0 PLUS CATGGAGCTGTGTTTGTACCCCACCTCCAAATTCCACCACTGGCCCTGGGCCCCTTACTT[-/ACTC]AGTTCCTGCCGTAGCGTCTGGATGAGGGGGTATCGGCCCTGGTTGCAGGAGAAGCCGGCA CATGGAGCTGTGTTTGTACCCCACCTCCAAATTCCACCACTGGCCCTGGGCCCCTTACTT[-/ACTC]AGTTCCTGCCGTAGCGTCTGGATGAGGGGGTATCGGCCCTGGTTGCAGGAGAAGCCGGCA 662 3 -
exm-IND1-85310248-0_P_F_1990486624 exm-IND1-85310248 PLUS [I/D] exm-IND1-85310248 56795122 TCAGAACCATGGCTCCAAAACAAAAGAAAAAGACATCACGTGGCAAAAAA 37.1 1 85537661 diploid Homo sapiens 1000genomes 0 PLUS CTTTATGCAGCCCAAGTCAGAACCATGGCTCCAAAACAAAAGAAAAAGACATCACGTGGC[-/A]AAAAAAGACTAAAACCAGTATTAGCTGGTAGGAATATTTCTTCATTGAATGGGATTTTTT CTTTATGCAGCCCAAGTCAGAACCATGGCTCCAAAACAAAAGAAAAAGACATCACGTGGC[-/A]AAAAAAGACTAAAACCAGTATTAGCTGGTAGGAATATTTCTTCATTGAATGGGATTTTTT 688 3 +
exm-IND10-102817747-0_P_F_1990486569 exm-IND10-102817747 PLUS [I/D] exm-IND10-102817747 30777118 CTCTGCAAGTTTTGTGCCTTAGCGGAAAGAGGCGACATCTCTGGCAAGTT 37.1 10 102827758 diploid Homo sapiens 1000genomes 0 PLUS GGGAACACCTGGCTCTGCAAGTTTTGTGCCTTAGCGGAAAGAGGCGACATCTCTGGCAAG[-/T]TTGGGAGTACAGGAAGTAGCGAAGGAGTGCCATCTGGTGGATCCTTCTGGTAGTGACACT GGGAACACCTGGCTCTGCAAGTTTTGTGCCTTAGCGGAAAGAGGCGACATCTCTGGCAAG[-/T]TTGGGAGTACAGGAAGTAGCGAAGGAGTGCCATCTGGTGGATCCTTCTGGTAGTGACACT 662 3 +
exm-IND10-18329639-0_M_R_1990486442 exm-IND10-18329639 MINUS [D/I] exm-IND10-18329639 87684402 AAGGCTGCTCCTATGGCTAGGCCATCTGCAAAATTATGCAGGCTGTCCCC 37.1 10 18289634 diploid Homo sapiens 1000genomes 0 PLUS CTGTGTTTATTTGGTTCCTTAGGTAAAGCCATTAGCTTGTTAGCAATCATGATTCTGGTT[-/G]GGGGACAGCCTGCATAATTTTGCAGATGGCCTAGCCATAGGAGCAGCCTTCTCATCATCA CTGTGTTTATTTGGTTCCTTAGGTAAAGCCATTAGCTTGTTAGCAATCATGATTCTGGTT[-/G]GGGGACAGCCTGCATAATTTTGCAGATGGCCTAGCCATAGGAGCAGCCTTCTCATCATCA 662 3 -
exm-IND10-27476467-0_M_R_1990486443 exm-IND10-27476467 MINUS [D/I] exm-IND10-27476467 36679191 ATGGAGCCAGCAAAAAGGATGAAGAAGAGCTTGGACACAACCGATAACTG 37.1 10 27436462 diploid Homo sapiens 1000genomes 0 PLUS GCATTTGGAGAAACCCGCAGTGTACAGGGATTGAGAGGGAGAAGGGTTCTGGACGGAtgT[-/GC]cagttatcggttgtgtccaagctcttcttcatcctttttgctggctccatgaacatggat GCATTTGGAGAAACCCGCAGTGTACAGGGATTGAGAGGGAGAAGGGTTCTGGACGGAtgT[-/GC]cagttatcggttgtgtccaagctcttcttcatcctttttgctggctccatgaacatggat 662 3 -
exm-IND10-27727540-0_M_R_1990486444 exm-IND10-27727540 MINUS [I/D] exm-IND10-27727540 69660265 ATTATTTTTCAGATTATGGTCCCAGGGTTATGGTTATTGTTACTAAAAAA 37.1 10 27687535 diploid Homo sapiens 1000genomes 0 PLUS TTCAAAAATTTTAGTACAGTTTTCCAGTTTTTGCCTAACATCTTTATCCCAGTAGTCAAC[-/T]TTTTTTAGTAACAATAACCATAACCCTGGGACCATAATCTGAAAAATAATTCTCCTCTAC TTCAAAAATTTTAGTACAGTTTTCCAGTTTTTGCCTAACATCTTTATCCCAGTAGTCAAC[-/T]TTTTTTAGTAACAATAACCATAACCCTGGGACCATAATCTGAAAAATAATTCTCCTCTAC 662 3 -
exm-IND10-74560589-0_P_F_1990486573 exm-IND10-74560589 PLUS [D/I] exm-IND10-74560589 67623241 GGCCCCTATACTCAGCAACAGAATGGGACTTTCCCATTCTGGCTGCCCCC 37.1 10 74890584 diploid Homo sapiens 1000genomes 0 PLUS GCCCTGAAGAGAAAGGGCCCCTATACTCAGCAACAGAATGGGACTTTCCCATTCTGGCTG[-/C]CCCCCTAAGTTAGCCATCTCCCACCAACTGATTAAGGAGTGGGTGGAAAAACAGACCTGT GCCCTGAAGAGAAAGGGCCCCTATACTCAGCAACAGAATGGGACTTTCCCATTCTGGCTG[-/C]CCCCCTAAGTTAGCCATCTCCCACCAACTGATTAAGGAGTGGGTGGAAAAACAGACCTGT 662 3 +
exm-IND11-102094357-0_P_F_1990486575 exm-IND11-102094357 PLUS [D/I] exm-IND11-102094357 21744240 CCCAGGTCCTACCATGTACTATGACTCTCTTGAGAAGACCTTACCATAGA 37.1 11 102589148 diploid Homo sapiens 1000genomes 0 PLUS GTGTTCGCCTATTCCCAGGTCCTACCATGTACTATGACTCTCTTGAGAAGACCTTACCAT[-/AG]AGATGGCCTGAATGCCATCGATGTCATCTTGAGGGAGTGAGTAGTTGCTGGTTTCCCTGA GTGTTCGCCTATTCCCAGGTCCTACCATGTACTATGACTCTCTTGAGAAGACCTTACCAT[-/AG]AGATGGCCTGAATGCCATCGATGTCATCTTGAGGGAGTGAGTAGTTGCTGGTTTCCCTGA 662 3 +
exm-IND11-60867390-0_M_R_1990486445 exm-IND11-60867390 MINUS [D/I] exm-IND11-60867390 55739874 GCTGACATGAAGGTGCCCACCAGGGCACGGGCAATCTTCACCCCGCGGCC 37.1 11 61110815 diploid Homo sapiens 1000genomes 0 PLUS TGTTTTCTTTCCCTGATGCCCATTTTTCCCTTTTGGACTGCCACACTCTGGTATTGCAGA[-/G]GGCCGCGGGGTGAAGATTGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCACTGGAGATG TGTTTTCTTTCCCTGATGCCCATTTTTCCCTTTTGGACTGCCACACTCTGGTATTGCAGA[-/G]GGCCGCGGGGTGAAGATTGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCACTGGAGATG 662 3 -
exm-IND11-73463127-0_P_F_1990486580 exm-IND11-73463127 PLUS [I/D] exm-IND11-73463127 9651233 GAGACTTCTGGTGGCAGGAGATGACTTCTGGTGGAGAGAGCTGGACCTCA 37.1 11 73785480 diploid Homo sapiens 1000genomes 0 PLUS GTGGAGGCAGGAGACTTCTGGTGGCAGGAGATGACTTCTGGTGGAGAGAGCTGGACCTCA[-/T]CATTCCTTCTGGGGAGCTGCTCAGACTCACTGTGGCTGCTGCAGTCCATGGAGTCCAGCT GTGGAGGCAGGAGACTTCTGGTGGCAGGAGATGACTTCTGGTGGAGAGAGCTGGACCTCA[-/T]CATTCCTTCTGGGGAGCTGCTCAGACTCACTGTGGCTGCTGCAGTCCATGGAGTCCAGCT 662 3 +
exm-IND12-4584372-0_P_F_1990486581 exm-IND12-4584372 PLUS [I/D] exm-IND12-4584372 12660268 CTTACTTTGCCTCCGCAGTATACACGTACATCCAAAGCCGGTTCTACCGA 37.1 12 4714112 diploid Homo sapiens 1000genomes 0 PLUS CGAGGTTTCTCTTACTTTGCCTCCGCAGTATACACGTACATCCAAAGCCGGTTCTACCGA[-/T]CCCCAGAAGTGATCCTGGGCCACCCCTACGACGTGGCCATTGACATGTGGAGCCTGGGCT CGAGGTTTCTCTTACTTTGCCTCCGCAGTATACACGTACATCCAAAGCCGGTTCTACCGA[-/T]CCCCAGAAGTGATCCTGGGCCACCCCTACGACGTGGCCATTGACATGTGGAGCCTGGGCT 662 3 +
exm-IND12-46829523-0_M_R_1990486450 exm-IND12-46829523 MINUS [I/D] exm-IND12-46829523 92657254 CTATGTGAAAAACTGACTGTTCTGTGCTCAGCTCCAGGAACTCTAAAAAC 37.1 12 48543257 diploid Homo sapiens 1000genomes 0 PLUS GCCCTTCACTGCATCGGGGAGATACTGGAGTCCCAGGCTACGGCGCACGGCATAGCGAGC[-/GAGT]GTTTTTAGAGTTCCTGGAGCTGAGCACAGAACAGTCAGTTTTTCACATAGCTGCGGGTCT GCCCTTCACTGCATCGGGGAGATACTGGAGTCCCAGGCTACGGCGCACGGCATAGCGAGC[-/GAGT]GTTTTTAGAGTTCCTGGAGCTGAGCACAGAACAGTCAGTTTTTCACATAGCTGCGGGTCT 662 3 -
exm-IND12-49036005-0_P_F_1990486582 exm-IND12-49036005 PLUS [I/D] exm-IND12-49036005 40683902 AGATCTCGTATTATCTTCAGAGAGAGCTCCTTTTCTGCTTCACTTGTCTC 37.1 12 50749739 diploid Homo sapiens 1000genomes 0 PLUS TTCGTTACTGAGATCTCGTATTATCTTCAGAGAGAGCTCCTTTTCTGCTTCACTTGTCTC[-/AT]GTGCATACACAGTGGAACTTTGGAAGTTAACACATTTTAATTCATCATTTAGCATACTCA TTCGTTACTGAGATCTCGTATTATCTTCAGAGAGAGCTCCTTTTCTGCTTCACTTGTCTC[-/AT]GTGCATACACAGTGGAACTTTGGAAGTTAACACATTTTAATTCATCATTTAGCATACTCA 662 3 +
exm-IND12-51232970-0_P_F_1990486584 exm-IND12-51232970 PLUS [D/I] exm-IND12-51232970 38633585 CCTCCACTCTTCCCGCTGCCACTGGCCACATTGAGGCTCCGGACACCCCC 37.1 12 52946704 diploid Homo sapiens 1000genomes 0 PLUS CGGCCAAATCCATAGCCTCCACTCTTCCCGCTGCCACTGGCCACATTGAGGCTCCGGACA[-/C]CCCCCAGGCTGTAGAGGCTCCGGCTGCCAAAGCCCCCACTGAGCCCTTTGCTCCCTGCCC CGGCCAAATCCATAGCCTCCACTCTTCCCGCTGCCACTGGCCACATTGAGGCTCCGGACA[-/C]CCCCCAGGCTGTAGAGGCTCCGGCTGCCAAAGCCCCCACTGAGCCCTTTGCTCCCTGCCC 688 3 +
exm-IND12-54361914-0_M_R_1990486452 exm-IND12-54361914 MINUS [I/D] exm-IND12-54361914 34611109 TCTTGCTCTCCATCTTGCGGTTGCTCTTGGGAGTCAGCACGGCCATCAGG 37.1 12 56075648 diploid Homo sapiens 1000genomes 0 PLUS TGCCCCTGCACCTCATGGCTCTGCTGGGCTGCTGGCAGCCCCTGTGCAAAAGCTACTTCC[-/CCTA]CCTGATGGCCGTGCTGACTCCCAAGAGCAACCGCAAGATGGAGAGCAAGAAACGGGAGCT TGCCCCTGCACCTCATGGCTCTGCTGGGCTGCTGGCAGCCCCTGTGCAAAAGCTACTTCC[-/CCTA]CCTGATGGCCGTGCTGACTCCCAAGAGCAACCGCAAGATGGAGAGCAAGAAACGGGAGCT 662 3 -
exm-IND12-67380833-0_P_F_1990486586 exm-IND12-67380833 PLUS [D/I] exm-IND12-67380833 80747453 AGTAAAATAGTGAGTCGAGCAACACCTGGACTTCAAAAATTTTCAAAAAC 37.1 12 69094567 diploid Homo sapiens 1000genomes 0 PLUS TGAATATACTGAGTAAAATAGTGAGTCGAGCAACACCTGGACTTCAAAAATTTTCAAAAA[-/C]CAGCCAGTATGCTCTGGCTTCTTCAACAGGAGATGGTCACATGGAGGCTGCTGGCTTCTT TGAATATACTGAGTAAAATAGTGAGTCGAGCAACACCTGGACTTCAAAAATTTTCAAAAA[-/C]CAGCCAGTATGCTCTGGCTTCTTCAACAGGAGATGGTCACATGGAGGCTGCTGGCTTCTT 662 3 +
exm-IND12-83947680-0_M_R_1990486453 exm-IND12-83947680 MINUS [I/D] exm-IND12-83947680 75699185 AAAAAAATAAGCATTGACTTTCTTTTTTTAGGTTCTTGGACTTTTATTCA 37.1 12 85423550 diploid Homo sapiens 1000genomes 0 PLUS TACATACCAAAAGCTGTTAAAAAATTATTTCTATCTAATAAGAGCCATGCACCAAATCCC[-/A]TGAATAAAAGTCCAAGAACCTAAAAAAAGAAAGTCAATGCTTATTTTTTTGTAATTGCCT TACATACCAAAAGCTGTTAAAAAATTATTTCTATCTAATAAGAGCCATGCACCAAATCCC[-/A]TGAATAAAAGTCCAAGAACCTAAAAAAAGAAAGTCAATGCTTATTTTTTTGTAATTGCCT 662 3 -
exm-IND12-8887191-0_M_R_1990486455 exm-IND12-8887191 MINUS [D/I] exm-IND12-8887191 6641113 CCCCGTTTCCCGGTCTCACATAGTAGGAGAAGCTGATCTCTTGGTCAGGG 37.1 12 8995925 diploid Homo sapiens 1000genomes 0 PLUS TTGAAATGTGGCCAGCCCCAGGAAGTGCTGGTGGATTATTACATCGACCCGGCCGATGCA[-/AG]CCCTGACCAAGAGATCAGCTTCTCCTACTATGTGAGACCGGGAAACGGGGACGGGTGAGA TTGAAATGTGGCCAGCCCCAGGAAGTGCTGGTGGATTATTACATCGACCCGGCCGATGCA[-/AG]CCCTGACCAAGAGATCAGCTTCTCCTACTATGTGAGACCGGGAAACGGGGACGGGTGAGA 688 3 -
exm-IND13-47565698-0_P_F_1990486590 exm-IND13-47565698 PLUS [I/D] exm-IND13-47565698 67614983 AACTTCACAGATCACAGAATCAGTACACATAACTACCTCTGAGTGAACAC 37.1 13 48667698 diploid Homo sapiens 1000genomes 0 PLUS GAGACTGACAAACTTCACAGATCACAGAATCAGTACACATAACTACCTCTGAGTGAACAC[-/AT]GAGACCTTTCTGGAAGCCAGTCACACCACCAGAGCAGCTTCATTCTGTGAAGAAGTTCCA GAGACTGACAAACTTCACAGATCACAGAATCAGTACACATAACTACCTCTGAGTGAACAC[-/AT]GAGACCTTTCTGGAAGCCAGTCACACCACCAGAGCAGCTTCATTCTGTGAAGAAGTTCCA 662 3 +

Total number of rows: 242924

Table truncated, full table size 104609 Kbytes.




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GPL18545_humanexome-12v1-1_a.csv.gz 21.2 Mb (ftp)(http) CSV

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