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Status
Public on Dec 31, 2014
Title
Agilent-031243 Clostridium perfringens pangenome
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Clostridium perfringens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
TIFN C1056 project. Contains probes for ATCC13124, SM101, strain 13; incomplete: ATCC3626, F4969, JGS1495, JGS1721, JGS1987, NCTC8239; plasmids: pBCNF5603, pCP13, pCP8533etx, pCPF4969, pCPF5603, pCW3, pSM101A, pSM101B Arrays of this design have barcodes that begin with 16031243 or 2531243. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. The scan files were dissected into the 4 slide regions which generates a data file for each hybridization
Submission date
Jul 21, 2014
Last update date
Dec 31, 2014
Contact name
Yinghua Xiao
E-mail(s)
yinghua.xiao@wur.nl
Organization name
Wageningen University
Street address
Bornse Weilanden 9
City
Wageningen
ZIP/Postal code
6700AA
Country
Netherlands
Samples (13)
GSM1440542 , GSM1440543 , GSM1440544 , GSM1440545 , GSM1440546 , GSM1440547
Series (1)
GSE59616
Genome-wide transcriptional profiling of Clostridium perfringens SM101 during sporulation
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
CHROMOSOMAL_LOCATION
Chromosomal Location
SEQUENCE
Sequence
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
CHROMOSOMAL_LOCATION
SEQUENCE
1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
Strain13__-_CPE1169_201-260
Strain13__-_CPE1169_201-260
FALSE
unmapped
CTTCATTGCAGATAGAAAACAACTTAAAGTTGGAACTTTTGTACTTGTTTTAGTAGTAGG
13
266
146
cluster_1009_1_20-79
cluster_1009_1_20-79
FALSE
unmapped
AGTGATGAATTAAAGATTTATTTAGAAAAAACAGAGAATATAGGTGCTATTCAAATGTTT
14
266
144
cluster_1991_7_26-82
cluster_1991_7_26-82
FALSE
unmapped
TAGATAGTAAAATAGGTGATGAAACAACTGTAGGACCATTTGCTTATGTTAGACCAG
15
266
142
SM101__CPR_0932_6-64
SM101__CPR_0932_6-64
FALSE
unmapped
TGATTGCACTGATGAAAAATTAAAACTAGAGTATGCACGTGTATATATATTACCTCAAA
16
266
140
pSM101B__CPR_B0010_27-84
pSM101B__CPR_B0010_27-84
FALSE
unmapped
GATAAACTATATAGATAATGTTCATAGTAACAGTAAAGGGTGGATAACCAGGAGCGTT
17
266
138
cluster_101_4_1-59
cluster_101_4_1-59
FALSE
unmapped
TCTATAGCTTATGGAGAAAAATTAGGTCTTGTTTATGGACCTCATTCTAGAGGTATTTC
18
266
136
cluster_672_2_4-63
cluster_672_2_4-63
FALSE
unmapped
CTTACCTCTGCAAAGATACTATTAATCATCGCGCCTCTATCTCAGTTATTCACTTTATAT
19
266
134
cluster_1179_6_7-61
cluster_1179_6_7-61
FALSE
unmapped
GGAACAATGTCAGGAAATCCAATAGTAATGAGTGCAGGACTTGCAACAGTTAAAA
20
266
132
Strain13__-_CPE0260_175-233
Strain13__-_CPE0260_175-233
FALSE
unmapped
ATTGTTAGAGCTTTAGAAAATCCATTAAAGCTTATCGTATCCTTTGTTGGAATATATTC
Total number of rows: 45220 Table truncated, full table size 5861 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL18980_probe_to_locus_Agilent-031243.txt.gz
281.5 Kb
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