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Status
Public on Mar 19, 2005
Title
Single HHV-4 ViruChip
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
human gammaherpesvirus 4
Description
The ViruChip HHV-4(Celonex, Inc., Edmonton, Canada), the Epstein-Barr virus (EBV) DNA chip is made up of triplicate spots of 60-mer oligonucleotide specific probes for each EBV transcription unit. Human genes (Tubilin, G3PDH, Action, and ribo-S9) were included in order to standardize the amount of applied cDNA and to normalize the signals between samples and references. HIV genes were also printed to exclude non-specific hybridization.
Web link
http://www.celonex.com/SingleHHV4.htm Contributor(s)
Ohyashiki JH Citation(s)
16449999 Submission date
Mar 17, 2005
Last update date
Mar 27, 2006
Contact name
Junko H Ohyashiki
E-mail(s)
junko@hh.iij4u.or.jp Phone
+81-3-3342-6111(ext.5999)
Fax
+81-3-5381-6651
Organization name
Tokyo Medical University
Department
Intractable Immune System Diseases Research Center
Street address
6-7-1, Nishishinjuku, Shinjuku-ku
City
Tokyo
ZIP/Postal code
160-0023
Country
Japan
Samples (9)
GSM45483 , GSM45484 , GSM45485 , GSM45486 , GSM45487 , GSM45488
Series (1)
GSE2414 Transcriptional profiling of EBV gene in nasal NK/T lymphoma and chronic active EBV infection
Data table header descriptions ID GENE Gene name
GENOME_ACC GeneBank Accession number
Gene_description EBV, HIV or human control genes
BLOCK Block
ROW Row
COLUMN Column
ORF Open reading flame of the virus
SPOT_ID Spot ID of trplicates
Data table ID GENE GENOME_ACC Gene_description BLOCK ROW COLUMN ORF SPOT_ID 1
BNRF1
NC_001345
EBV gene
1
1
1
HHV4gp011
2
BNRF1
NC_001345
EBV gene
1
1
2
HHV4gp011
3
BNRF1
NC_001345
EBV gene
1
1
3
HHV4gp011
4
BCRF1
NC_001345
EBV gene
1
1
4
HHV4gp013
5
BCRF1
NC_001345
EBV gene
1
1
5
HHV4gp013
6
BCRF1
NC_001345
EBV gene
1
1
6
HHV4gp013
7
BCRF2
NC_001345
EBV gene
1
1
7
HHV4gp016
8
BCRF2
NC_001345
EBV gene
1
1
8
HHV4gp016
9
BCRF2
NC_001345
EBV gene
1
1
9
HHV4gp016
10
EBNA2
NC_001345
EBV gene
1
1
10
HHV4gp056
11
EBNA2
NC_001345
EBV gene
1
1
11
HHV4gp056
12
EBNA2
NC_001345
EBV gene
1
1
12
HHV4gp056
13
BLLF3
NC_001345
EBV gene
1
2
1
HHV4gp075
14
BLLF3
NC_001345
EBV gene
1
2
2
HHV4gp075
15
BLLF3
NC_001345
EBV gene
1
2
3
HHV4gp075
16
BYRF1
NC_001345
EBV gene
1
2
4
HHV4gp056
17
BYRF1
NC_001345
EBV gene
1
2
5
HHV4gp056
18
BYRF1
NC_001345
EBV gene
1
2
6
HHV4gp056
19
BFLF1
NC_001345
EBV gene
1
2
7
HHV4gp059
20
BFLF1
NC_001345
EBV gene
1
2
8
HHV4gp059
336 15 Kbytes .Supplementary data files not provided
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