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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 09, 2014 |
| Title |
Illumina HiSeq 2500 (Sus scrofa) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Sus scrofa |
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| |
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| Submission date |
Sep 09, 2014 |
| Last update date |
Sep 25, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (2291)
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GSM1501205, GSM1501206, GSM1501207, GSM1501208, GSM1501209, GSM1501210
GSM1501211, GSM1501212, GSM1501213, GSM1501214, GSM1501215, GSM1501216, GSM1501217, GSM1501218, GSM1501219, GSM1501220, GSM1501221, GSM1501222, GSM1501223, GSM1501224, GSM1501225, GSM1501226, GSM1501227, GSM1501228, GSM1501229, GSM1501230, GSM1501231, GSM1501232, GSM1501233, GSM1501234, GSM1501235, GSM1501236, GSM1501237, GSM1501238, GSM1501239, GSM1501240, GSM1816312, GSM1816313, GSM1833598, GSM1833599, GSM1898693, GSM1898694, GSM1898695, GSM1898696, GSM1898697, GSM1898698, GSM1937973, GSM1937974, GSM1937975, GSM1937976, GSM1937977, GSM1937978, GSM1937979, GSM1937980, GSM1937981, GSM1937982, GSM1937983, GSM1937984, GSM1937985, GSM1937986, GSM1937987, GSM1937988, GSM1937989, GSM1937990, GSM1937991, GSM1937992, GSM1941407, GSM1941408, GSM1941409, GSM1941410, GSM1941411, GSM1941412, GSM1978818, GSM1978819, GSM2041267, GSM2041268, GSM2041269, GSM2041270, GSM2059050, GSM2059051, GSM2059052, GSM2059053, GSM2059054, GSM2059055, GSM2059056, GSM2059057, GSM2059058, GSM2059059, GSM2059060, GSM2059061, GSM2059062, GSM2059063, GSM2059064, GSM2059065, GSM2059066, GSM2059067, GSM2059068, GSM2059069, GSM2059070, GSM2059071, GSM2059072, GSM2059073, GSM2059074, GSM2059075, GSM2059076, GSM2059077, GSM2059078, GSM2059079, GSM2059080, GSM2059081, GSM2059082, GSM2059083, GSM2059084, GSM2059085, GSM2059086, GSM2059087, GSM2059088, GSM2059089, GSM2059090, GSM2059091, GSM2059092, GSM2059093, GSM2059094, GSM2059095, GSM2059096, GSM2059097, GSM2059098, GSM2059099, GSM2059100, GSM2059101, GSM2059102, GSM2059103, GSM2059104, GSM2059105, GSM2059106, GSM2059107, GSM2059108, GSM2059109, GSM2059110, GSM2059111, GSM2059112, GSM2059113, GSM2059114, GSM2059115, GSM2059116, GSM2059117, GSM2059118, GSM2059119, GSM2059120, GSM2059121, GSM2059122, GSM2059123, GSM2059124, GSM2059125, GSM2059126, GSM2059127, GSM2059128, GSM2059129, GSM2059130, GSM2059131, GSM2059132, GSM2059133, GSM2059134, GSM2059135, GSM2059136, GSM2059137, GSM2059138, GSM2059139, GSM2059140, GSM2059141, GSM2112269, GSM2112270, GSM2112271, GSM2112272, GSM2112273, GSM2112274, GSM2310320, GSM2310321, GSM2322533, GSM2322534, GSM2322535, GSM2322536, GSM2338124, GSM2341808, GSM2341809, GSM2344430, GSM2344431, GSM2344432, GSM2344433, GSM2344434, GSM2344435, GSM2344436, GSM2344437, GSM2344438, GSM2344439, GSM2344440, GSM2344441, GSM2344442, GSM2344443, GSM2371263, GSM2371264, GSM2371265, GSM2371266, GSM2371267, GSM2371268, GSM2371269, GSM2371270, GSM2371271, GSM2371272, GSM2371273, GSM2371274, GSM2387488, GSM2387489, GSM2387490, GSM2387491, GSM2387492, GSM2387493, GSM2387494, GSM2387495, GSM2387496, GSM2387497, GSM2387498, GSM2387499, GSM2394158, GSM2394159, GSM2394160, GSM2394161, GSM2394162, GSM2394163, GSM2394164, GSM2394165, GSM2394166, GSM2394167, GSM2394168, GSM2394169, GSM2394170, GSM2394171, GSM2394172, GSM2394173, GSM2399090, GSM2399091, GSM2399092, GSM2399093, GSM2429694, GSM2429695, GSM2429696, GSM2461207, GSM2461208, GSM2461209, GSM2461210, GSM2461211, GSM2461212, GSM2461213, GSM2461214, GSM2461215, GSM2461216, GSM2461217, GSM2461218, GSM2461219, GSM2461220, GSM2461221, GSM2461222, GSM2461223, GSM2461224, GSM2461225, GSM2461226, GSM2461227, GSM2461228, GSM2461229, GSM2461230, GSM2461231, GSM2461232, GSM2461233, GSM2461234, GSM2461235, GSM2461236, GSM2461237, GSM2461238, GSM2461239, GSM2461240, GSM2461241, GSM2461242, GSM2461243, GSM2461244, GSM2461245, GSM2461246, GSM2461247, GSM2461248, GSM2461249, GSM2461250, GSM2461251, GSM2461252, GSM2461253, GSM2461254, GSM2461255, GSM2461256, GSM2461257, GSM2461258, GSM2461259, GSM2461260, GSM2461261, GSM2461262, GSM2461263, GSM2461264, GSM2461265, GSM2461266, GSM2461267, GSM2461268, GSM2461269, GSM2461270, GSM2461271, GSM2461272, GSM2461273, GSM2461274, GSM2461275, GSM2461276, GSM2461277, GSM2461278, GSM2461279, GSM2461280, GSM2461281, GSM2461282, GSM2461283, GSM2461284, GSM2461285, GSM2461286, GSM2461287, GSM2461288, GSM2461289, GSM2461290, GSM2461291, GSM2461292, GSM2461293, GSM2461294, GSM2461295, GSM2461296, GSM2461297, GSM2461298, GSM2461299, GSM2461300, GSM2461301, GSM2461302, GSM2464063, GSM2464064, GSM2464065, GSM2464081, GSM2464082, GSM2464083, GSM2464084, GSM2464085, GSM2464086, GSM2464093, GSM2464094, GSM2464095, GSM2464096, GSM2464097, GSM2464098, GSM2464120, GSM2464121, GSM2464122, GSM2536940, GSM2536941, GSM2536942, GSM2536943, GSM2536944, GSM2536945, GSM2597537, GSM2597538, GSM2597539, GSM2597540, GSM2597541, GSM2597542, GSM2597543, GSM2597544, GSM2597545, GSM2597546, GSM2597547, GSM2597548, GSM2632185, GSM2632186, GSM2632187, GSM2632188, GSM2632189, GSM2632190, GSM2683509, GSM2683510, GSM2683511, GSM2718715, GSM2718716, GSM2718717, GSM2718718, GSM2718719, GSM2718720, GSM2718721, GSM2718722, GSM2718723, GSM2718724, GSM2718725, GSM2718726, GSM2718727, GSM2718728, GSM2718729, GSM2720056, GSM2720057, GSM2720058, GSM2720059, GSM2720060, GSM2720061, GSM2720062, GSM2720063, GSM2720064, GSM2720065, GSM2720066, GSM2720067, GSM2720068, GSM2720069, GSM2720070, GSM2745951, GSM2745952, GSM2745953, GSM2745954, GSM2745955, GSM2745956, GSM2830978, GSM2830979, GSM2830980, GSM2830981, GSM2830982, GSM2830983, GSM2842962, GSM2842963, GSM2842964, GSM2842965, GSM2842966, GSM2842983, GSM2842984, GSM2842985, GSM2842986, GSM2842987, GSM2894663, GSM2894664, GSM2894665, GSM2894666, GSM2894667, GSM2894668, GSM2894669, GSM2894670, GSM2894671, GSM2894672, GSM2894673, GSM2894674, GSM2894675, GSM2894676, GSM2894677, GSM2894678, GSM2894679, GSM2894680, GSM2894681, GSM2894682, GSM2894683, GSM2894684, GSM2894685, GSM2894686, GSM2894687, GSM2894688, GSM2894689, GSM2894690, GSM2894691, GSM2894692, GSM2894693, GSM2894694, GSM2894695, GSM2894696, GSM2894697, GSM2894698, GSM2894699, GSM2894700, GSM2894701, GSM2894702, GSM2894703, GSM2894704, GSM2894705, GSM2894706, GSM2894707, GSM2894708, GSM2894709, GSM2894710, GSM2894711, GSM2894712, GSM2894713, GSM2894714, GSM2894715, GSM2894716, GSM2894717, GSM2894718, GSM2894719, GSM2894720, GSM2894721, GSM2894722, GSM2894723...
Accession list truncated, click here to browse through all related public accessions
You can also download a list of all accessions here
|
| Series (131)
|
| GSE61271 |
RNA-Sequencing of lean, intermediate, and obese pigs |
| GSE70673 |
Expression data from longissimus dorsi muscle of Shaziling pig at 25-days old and longissimus dorsi musle of Yorkshire pig at 25-days old |
| GSE71390 |
The relationship between gene network structure and expression variation among individuals and species |
| GSE73593 |
Total RNA sequencing of ovary tissues at 49 days post coitus in Large White and Meishan pigs. |
| GSE74934 |
Transcriptome Profiling of Testis Tissue from Boars with Good and Bad Sperm DNA Fragmentation Index |
| GSE75045 |
Identification of genes in longissimus dorsi muscle differentially expressed between Wannanhua and Yorkshire pigs using RNA sequencing |
| GSE76007 |
The effect of iron dextran on the transcriptome of hippocampus in Rongchang piglet |
| GSE76941 |
Prediction and Expression Analysis of miRNAs Associated with Oxidative Stress in RongChang pig’s Hippocampus |
| GSE77776 |
Transcriptome data used for gene annotation |
| GSE80069 |
MicroRNA Expression Profiling in Porcine Muscle Identifies a Role for miR-27 in Mediating MYH7 Expression |
| GSE86919 |
Circular RNAs associated with pork quality traits |
| GSE87111 |
Transcriptome Analysis of miRNAs in Umbilical cord blood exosomes of Intrauterine Growth Restriction Pigs |
| GSE87680 |
Circular RNAs, mRNAs and lncRNAs associated with castration-related fat deposition |
| GSE87846 |
Circular RNAs,mRNAs and lncRNAs in backfat associated with porcine castration-related fat deposition |
| GSE88697 |
Microbiota-associated intestinal methylation changes confer immune-metabolic gene network of NEC in preterm pig model |
| GSE89331 |
Transcriptome analysis of the mRNAs and lncRNAs in porcine alveolar macrophages in response to porcine reproductive and respiratory syndrome virus or IFN-a at different time points |
| GSE89414 |
Defining Age- and Lactocrine-Sensitive Elements of the Neonatal Porcine Uterine microRNA-mRNA Interactome |
| GSE89958 |
The effects of virus-induced maternal inflammation on offspring methyaltion patterns in skeletal muscle |
| GSE90135 |
Comparative transcriptome analysis reveals genes regulating myogenesis and adipogenesis in Laiwu pigs over four developmental stages |
| GSE92433 |
Dynamic Profiles of transcriptome in porcine liver |
| GSE93734 |
Genomics and transcriptomics of boar taint in pigs |
| GSE93855 |
Comparative transcriptomic analysis provides insights into high-altitude adaptation |
| GSE96633 |
Detection of different expressed genes in newborn piglet liver using RNA-seq to analyze negative effects caused by dietary tryptophan |
| GSE98504 |
Global fibroblast activation in the left ventricle but localized fibrosis after myocardial infarction |
| GSE99092 |
Identification of differentially expressed genes in longissimus dorsi muscle between Wei and Yorkshire pigs using RNA-sequencing |
| GSE101983 |
RNA-seq analysis of sow mammary gland tissue from late pregnancy to farrowing. |
| GSE102743 |
Exploring differentially expressed genes in the hypothalamic-pituitary-gonadal axis of estrous and anestrous primiparous sows using RNA-Seq technique |
| GSE106173 |
Expression data from porcine endometrial epithelial cells induced by seminal exosomes |
| GSE106577 |
Nucleosome profiles for mammalian tissues [RNA-Seq] |
| GSE106578 |
Nucleosome profiles for mammalian tissues [Mnase-Seq] |
| GSE106580 |
Nucleosome profiles for mammalian tissues |
| GSE108284 |
Intestinal DNA methylome of preterm pigs |
| GSE109539 |
Cell Type-specific Analysis of Transcriptome Changes in the Porcine Endometrium on Day 12 of Pregnancy |
| GSE111849 |
Gene expression profiling of adult chondrocyte populations |
| GSE111985 |
Testosterone-Dependent Porcine miR-26a-5p and let-7g-5p Act as Signaling Mediators to Regulate Sperm Apoptosis via Targeting PTEN and PMAIP1 |
| GSE112152 |
Transcriptome analysis of swine spleen after infection with PCV2 |
| GSE112380 |
Regulation of lineage segregation, pluripotency and X chromosome inactivation in the pig revealed by scRNA-Seq |
| GSE113130 |
Comparison of microRNA expression profiling in pig spleens among three time points after infection by Chinese I genotype strain of Toxoplasma gondii |
| GSE113252 |
Transcriptional Profiling of Host Cell Responses to Virulent Haemophilus parasuis |
| GSE113316 |
Differential expression and co-expression gene networks reveal candidate biomarkers of boar taint in non-castrated pigs (RNA-seq data set) |
| GSE113366 |
Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos |
| GSE114225 |
Characterization of eQTLs associated with androstenone by RNA sequencing in porcine testis - RNASeq Database |
| GSE114726 |
RNASeq analysis of calcification stages (and KPT) in pAVICs |
| GSE114779 |
A comparison of genome-wide DNA methylation profiles between Tibetan and Yorkshire pigs |
| GSE119368 |
Comparative transcriptome analysis reveals genes regulating myogenesis and adipogenesis among different pig breeds |
| GSE119474 |
Characterization of eQTLs associated with androstenone by RNA sequencing in porcine testis (RNASeq Database) |
| GSE119643 |
MicroRNA expression profile of porcine alveolar macrophages infected with Toxoplasma gondii |
| GSE120031 |
Derivation of authentic porcine embryonic stem cells using defined culture conditions |
| GSE122516 |
Integrated Analysis of LncRNA-mRNA Co-Expression in the Extracellular Matrix of Developing Deciduous Teeth in Miniature Pigs |
| GSE122764 |
A Cell Proliferation and Inflammatory Signature is Induced by Lawsonia intracellularis Infection in Swine |
| GSE123265 |
Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs |
| GSE123857 |
Re-sequencing data used for calling CNVs |
| GSE123858 |
Transcriptome data used for Sus scrofa gene annotation |
| GSE123859 |
Transcriptome data and CNVs for Sus scrofa |
| GSE124099 |
Early cleavage of porcine preimplantation embryos is regulated by tRNAGln-TTG-derived small RNAs present in mature spermatozoa |
| GSE124418 |
Small non-coding RNA transcriptome of four high-altitude vertebrates and their low-altitude relatives |
| GSE124484 |
Integrated mRNA and miRNA profiles expression of liver between Jinhua and Landrace pigs |
| GSE124783 |
RNA-seq data from submiligram porcine myocardial tissue |
| GSE126150 |
Culture condition modifications to improve pluripotency in porcine pluripotent stem cells |
| GSE126424 |
Cross-species association of microRNA expression in mammary epithelial cells with stem/progenitor characteristics and cancer susceptibility |
| GSE128750 |
Global studies of Genome-Wide DNA Methylation Patterns on porcine longissimus dorsi muscle |
| GSE129385 |
Genome-wide DNA methylation analysis using next generation sequencing to reveal candidate genes responsible for boar taint in pigs |
| GSE132735 |
Transcriptome analysis of a PRRSV-infected and control PAMs |
| GSE132962 |
High-Seq porcine granulosa cell |
| GSE134133 |
Long Non-Coding RNA and mRNA profiling using High-throughput RNA sequencing in pseudorabies virus type II infected cells |
| GSE134735 |
Analysis of miRNA expression profiles of porcine granulosa cells overexpressing RBP4 |
| GSE137133 |
Establishment and characterization of a porcine B cell lymphoma cell line |
| GSE137293 |
RNA-seq analysis of young swine following cardiac ischemia/reperfusion injury. |
| GSE140780 |
Transcriptome of pig whole blood microRNAs provides insight into immune system development |
| GSE141564 |
RNA-seq data of endometrium from Yorkshire pigs |
| GSE141648 |
RNA-seq data of porcine satellite cells at 24h and 36h of differentiation |
| GSE141935 |
A cytokine screen using CRISPR-Cas9 knock-in reporter pig iPS cells reveals that Activin A regulates NANOG |
| GSE141943 |
A longitudinal m6A epi-transcriptome profile during porcine development of prenatal skeletal muscles |
| GSE143484 |
IRF-1 expressed in the early blastocyst inner cell mass of pigs enhances the pluripotency of induced pluripotent stem cells |
| GSE143848 |
DNA methylation changes during preimplantation development reveal inter species-differences and reprogramming events at imprinted genes [RNA-Seq] |
| GSE143849 |
DNA methylation changes during preimplantation development reveal inter species-differences and reprogramming events at imprinted genes [BS-Seq] |
| GSE143850 |
DNA methylation changes during preimplantation development reveal inter species-differences and reprogramming events at imprinted genes |
| GSE144073 |
mRNA seguencing of the ileum tissue from gnotobiotic pigs inoculated with/without Enterobacter cloacae and Human norovirus GII |
| GSE144247 |
Effect of dietary fats on liver transcriptome in pigs, estimated by 3`quant mRNA-seq |
| GSE144780 |
Muscle transcriptome analysis identifies genes involved in ciliogenesis and in the molecular cascade associated with intramuscular fat content in Large White heavy pigs. |
| GSE146187 |
Cell Atlas of Aqueous Humor Outflow Pathways in Eyes of Humans and Four Model Species Provides Insights into Glaucoma Pathogenesis [Pig] |
| GSE146188 |
Cell Atlas of Aqueous Humor Outflow Pathways in Eyes of Humans and Four Model Species Provides Insights into Glaucoma Pathogenesis |
| GSE146408 |
Transcriptome profiling of porcine jejunum tissue, its derived organoids over long-term culture, and transformed cell line IPECJ2 as reference model |
| GSE152087 |
Characterization and Analysis of Whole Transcriptome of Ningxiang Pig Spleens Reveal Potential Mechanism for Transcriptional Regulation in Immunity [miRNA-Seq] |
| GSE152644 |
Characterization and Analysis of Whole Transcriptome of Ningxiang Pig Spleens Reveal Potential Mechanism for Transcriptional Regulation in Immunity |
| GSE152934 |
Relative MicroRNA expresssion profile of porcine embryonic and somatic cells |
| GSE154933 |
Alteration in porcine testicular gene expression in response to reduced testicular estradiol synthesis |
| GSE155136 |
Specification and epigenomic resetting of the pig germline exhibit conservation with the human lineage |
| GSE155197 |
Diet-Dependent Changes of the DNA Methylome Using a Göttingen Minipig Model for Obesity |
| GSE156629 |
RNA-seq of porcine parthenogenetic embryos and wild-type controls |
| GSE158226 |
RNA-Seq analysis of porcine islets and pancreas to characterize the differentially expressed genes between higher and lower islet density |
| GSE162391 |
A novel lesional transciptional signature separates atherosclerosis with and without diabetes in Yorkshire swine and humans |
| GSE162636 |
Transcriptomic responses induced in muscle and adipose tissues of growing pigs by intravenous infusion of sodium butyrate |
| GSE163128 |
Comparative analysis of piRNA profiles reveals cryoinjury or freezability between boar (Sus scrofa) and giant panda (Ailuropoda melanoleuca) sperm during cryopreservation |
| GSE174377 |
Transcriptome Profile of Natural Product Deoxyshikonin Induced Gene Expression in IPEC-J2 |
| GSE174494 |
Transcriptional profiling reveals differential effect of in vivo porcine reproductive and respiratory syndrome virus infection on infected and bystander pulmonary alveolar macrophage cells |
| GSE175615 |
Conservation and divergence of DNA methylation patterns and functions in vertebrates |
| GSE176023 |
Modelling Porcine NAFLD by Deletion of Leptin and defining the role of AMPK in hepatic fibrosis |
| GSE176550 |
Expression profiles of microRNAs in ST cells uninfected or infected by PDCoV |
| GSE178380 |
The ChIP_seq of pituitary gland from Bama Xiang and Large White pigs |
| GSE178723 |
AOS10 could benefit the pig's sperm quantity via improvement of intestinal microbiota. |
| GSE180056 |
ESRRB facilitates the conversion of Trophoblast-like Stem Cells from induced pluripotent stem cells by directly regulating KRT8 and CDX2 [ChIP-seq] |
| GSE180058 |
ESRRB facilitates the conversion of Trophoblast-like Stem Cells from induced pluripotent stem cells by directly regulating KRT8 and CDX2 |
| GSE180099 |
Comparative analyses of sperm DNA methylomes among three commercial pig breeds reveal vital hypomethylated regions associated with spermatogenesis and embryonic development |
| GSE180219 |
Transcriptome analysis of mRNA and long non-coding RNA during subsequent embryo development of porcine cloned zygotes after vitrification |
| GSE181343 |
Evaluation of intestinal response to zinc restriction and zinc sources in pigs |
| GSE184969 |
MeDIP based methylome analysis of muscle from two pig breeds with varying muscularity |
| GSE184970 |
Muscle from two pig breeds with varying muscularity |
| GSE189135 |
In vivo lentiviral vector gene therapy to cure hereditary tyrosinemia type 1 and prevent development of precancerous and cancerous lesions |
| GSE189334 |
Transcriptome analysis of skeletal muscle from adipocyte-specific UCP1 knock-in (KI) pigs and wild-type (WT) pigs |
| GSE189397 |
H3K27ac BL HiChIP and GRID-seq data of LW and MS |
| GSE190291 |
Transcriptomic and chromatin accessibility analyses of porcine alveolar macrophages exposed to Fumonisin B1 |
| GSE192462 |
Raw data of testicular small RNA-Seq in Hezuo pigs and Landrace pigs at two different ages |
| GSE195526 |
RNA-seq using porcine parthenogenetic embryos and biparental controls |
| GSE195528 |
Porcine parthenogenetic embryos and biparental controls |
| GSE197049 |
Identification of gene expression signatures for phenotype-specific drug targeting of cardiac remodeling |
| GSE200624 |
Exploration of the transcriptional regulation network of the differentiation of porcine endothelial cells (ECs) |
| GSE201369 |
Oxidative stress-mediated alterations of the microRNA expression profile in porcine granulosa cells using RNA-Seq technique |
| GSE206118 |
Toosendanin suppresses African swine fever virus replication through upregulating IRF1 in porcine alveolar macrophage cultures |
| GSE209805 |
Exosome miRNA expression in umbilical cord blood of high-parity piglets reveals the reproductive potential of sows |
| GSE213924 |
Identification of the Regulatory Roles of LncPLAAT3-AS in Porcine Adipocyte Differentiation and Lipogenesis |
| GSE216966 |
The whole transcriptome analysis for seminal plasma extracellular vesicles (SPEVs) of Yorkshire boars |
| GSE218485 |
RNA-seq of porcine parthenogenetic embryos |
| GSE218487 |
RNA-seq and WGBS of parthenogenetic pig embryos |
| GSE224238 |
Guide-free Cas9 is detrimental to pig preimplantation embryo development |
| GSE225156 |
Effects of short distance transportation on physiological indexes, intestinal morphology, microbial community and transcriptome of jejunum in Weaned Piglets |
| GSE225698 |
The role of BFGF-related transcriptional regulation in calcification model of valve interstitial cells induced by osteoblastic medium |
| GSE228936 |
Gene expression profile of circRNA in spleen tissue of Meishan pigs at different time points |
| GSE229270 |
A postnatal network of co-hepato/pancreatic stem/progenitors in the biliary trees of pigs versus humans |
| GSE230340 |
African swine fever virus tropism for different organ tissues and host transcriptomic responses in experimentally infected pigs |
| GSE231770 |
Effect of SVA infection on circRNAs expression in PK-15 cells |
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| Supplementary data files not provided |
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