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Platform GPL19526 Query DataSets for GPL19526
Status Public on Jan 01, 2017
Title Agilent-031241 D. rerio 8x60k V3 Zebrafish 026437 [Genome Zv9 version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Danio rerio
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Probes mapped to Zebrafish Genome Zv9
D. rerio (Zebrafish) Oligo Microarray V3
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
 
Submission date Dec 10, 2014
Last update date Jan 01, 2017
Contact name Andreas Schüttler
E-mail(s) schuettler@bafg.de
Organization name German Federal Institute of Hydrology
Department Department Biochemistry and Ecotoxicology
Street address Am Mainzer Tor 1
City Koblenz
ZIP/Postal code 56068
Country Germany
 
Samples (32) GSM1562170, GSM1562171, GSM1562172, GSM1562173, GSM1562174, GSM1562175 
Series (1)
GSE63994 Concentration dependent gene expression in zebrafish embryos after PCE exposure

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL UNIGENE_ID ENSEMBL_ID DESCRIPTION SEQUENCE
1 GE_BrightCorner pos
2 DarkCorner pos
3 DarkCorner pos
4 A_15_P300836 FALSE CTTCATATGCTAGAGCATTTACAACATTTATATCCATGGTTCTGCAGTGTGTCTTCTACC
5 A_15_P119882 FALSE NM_001007403 TRIP10 Dr.36299 ENSDARG00000005679 thyroid hormone receptor interactor 10 [Source:HGNC Symbol;Acc:HGNC:12304] AAGTTGCAGGACATGGATGAAAGGCGTATTAAGAAGATGGCACAGGGCTACATCCTGTTT
6 A_15_P193251 FALSE ENSDARG00000097473 ATGTGTTGTGATCTGTTGTATGTTTGTGTACTCAAATAAAGAGGTACTTGGTGACATCTA
7 A_15_P119791 FALSE NM_001003848 eno2 Dr.78412 ENSDARG00000014287 enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27] TGAGGATTGAAGAGGAACTGGCCGATCAGGCTCGATTCGCCGGGCACAACTTCAGAAACC
8 A_15_P265286 FALSE ZDHHC5 (2 of 2) Dr.110123 ENSDARG00000087417 zinc finger, DHHC-type containing 5 [Source:HGNC Symbol;Acc:HGNC:18472] TAGCTATAAAAGTTTAGCCAATCAGACGCGCAACGGCAGTCTGTCTTATGAGAGTCTGCT
9 A_15_P115643 FALSE rbm14a Dr.77963 ENSDARG00000012723 RNA binding motif protein 14a [Source:ZFIN;Acc:ZDB-GENE-050522-496] AGGGATGGGGAATGTAAAACCTGAAGTGTAGTTAGTTAATTCCAAGAGTGAAAAACCGTG
10 A_15_P242711 FALSE GACACTCTGATAGTTATTAAACACTCAGTGAGCTGCTTATTAGTAATGAAACAGACTTTC
11 A_15_P119001 FALSE CCGCTGGGAGGGCTGTCAGACATGCCATCACAGAAGAATTTTTCATGCAACATTCAATAA
12 A_15_P693526 FALSE CCTAACCTGCCTAATTAACCTAATTAATCTAGCTAAGCCTTTAAATGTCACTTTAAGCTG
13 A_15_P599312 FALSE ATTTTTGACCCGTTTTGTGGGCAGGATGATTGGATTTCTCATCTGACATCCCTGCTGTTT
14 A_15_P202876 FALSE NM_001128712 pcgf5a Dr.134043 ENSDARG00000071007 polycomb group ring finger 5a [Source:ZFIN;Acc:ZDB-GENE-080723-33] TGTTTTGTGTAACGGTGAGATTATGGGTAAAGATCACACCCTGGAGTTCATCTACCGAAC
15 A_15_P706254 FALSE myh10 Dr.156326 ENSDARG00000000103 myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162] ACGTCTCTCCTCTTGTTTTTCCTCTTGTATACTGTAACTATTTCTAGATGACAGTGAGTT
16 A_15_P591727 FALSE TTTGTGTTCGACCCAAAGAAGATGACTCCAGAAGAGTTCTTCGGTGACCTCAACAACTTC
17 A_15_P272321 FALSE NM_001037122 ppifb Dr.85565 ENSDARG00000052842 peptidylprolyl isomerase Fb [Source:ZFIN;Acc:ZDB-GENE-051030-126] ACACACACACACACACAGTGTCAGACTGCTGGACAGATAATGTGAATGCTCTGGGTTAAA
18 A_15_P114064 FALSE NM_212804 insig2 Dr.81348 ENSDARG00000037203 insulin induced gene 2 [Source:ZFIN;Acc:ZDB-GENE-040202-1] ACAGCAAAAGTGCCAAACAGACTCTCACGGCCGAGAGCGAAGCCTGTTCATCCGCACACA
19 A_15_P678756 FALSE FAM72B Dr.90299 ENSDARG00000070621 family with sequence similarity 72, member B [Source:HGNC Symbol;Acc:HGNC:24805] GGCTCTTTTTATGCCTTGAAGCGAACTTTAGTATGCATTTATGACCAAAATGAGATGAAA
20 A_15_P741981 FALSE si:dkey-261h17.1 ENSDARG00000095268 si:dkey-261h17.1 [Source:ZFIN;Acc:ZDB-GENE-030829-14] GGGTTTGGTGCCAAGCCTCCCTTTAAAACAAAATGAAATCGTATAAAGTTCCACGAATTA

Total number of rows: 62976

Table truncated, full table size 10049 Kbytes.




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