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Status
Public on Jan 01, 2017
Title
Agilent-031241 D. rerio 8x60k V3 Zebrafish 026437 [Genome Zv9 version]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Danio rerio
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Probes mapped to Zebrafish Genome Zv9 D. rerio (Zebrafish) Oligo Microarray V3 Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number.
Submission date
Dec 10, 2014
Last update date
Jan 01, 2017
Contact name
Andreas Schüttler
E-mail(s)
schuettler@bafg.de
Organization name
German Federal Institute of Hydrology
Department
Department Biochemistry and Ecotoxicology
Street address
Am Mainzer Tor 1
City
Koblenz
ZIP/Postal code
56068
Country
Germany
Samples (32)
GSM1562170 , GSM1562171 , GSM1562172 , GSM1562173 , GSM1562174 , GSM1562175
GSM1562176 ,
GSM1562177 ,
GSM1562178 ,
GSM1562179 ,
GSM1562180 ,
GSM1562181 ,
GSM1562182 ,
GSM1562183 ,
GSM1562184 ,
GSM1562185 ,
GSM1562186 ,
GSM1562187 ,
GSM1562188 ,
GSM1562189 ,
GSM1562190 ,
GSM1562191 ,
GSM1562192 ,
GSM1562193 ,
GSM1562194 ,
GSM1562195 ,
GSM1562196 ,
GSM1562197 ,
GSM1562198 ,
GSM1562199 ,
GSM1562200 ,
GSM1562201
Series (1)
GSE63994
Concentration dependent gene expression in zebrafish embryos after PCE exposure
Data table header descriptions
ID
Agilent feature number
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBank Accession number
GENE_SYMBOL
Gene Symbol
UNIGENE_ID
UnigeneID
ENSEMBL_ID
EnsemblID
DESCRIPTION
Description
SEQUENCE
Sequence
Data table
ID
SPOT_ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
UNIGENE_ID
ENSEMBL_ID
DESCRIPTION
SEQUENCE
1
GE_BrightCorner
pos
2
DarkCorner
pos
3
DarkCorner
pos
4
A_15_P300836
FALSE
CTTCATATGCTAGAGCATTTACAACATTTATATCCATGGTTCTGCAGTGTGTCTTCTACC
5
A_15_P119882
FALSE
NM_001007403
TRIP10
Dr.36299
ENSDARG00000005679
thyroid hormone receptor interactor 10 [Source:HGNC Symbol;Acc:HGNC:12304]
AAGTTGCAGGACATGGATGAAAGGCGTATTAAGAAGATGGCACAGGGCTACATCCTGTTT
6
A_15_P193251
FALSE
ENSDARG00000097473
ATGTGTTGTGATCTGTTGTATGTTTGTGTACTCAAATAAAGAGGTACTTGGTGACATCTA
7
A_15_P119791
FALSE
NM_001003848
eno2
Dr.78412
ENSDARG00000014287
enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
TGAGGATTGAAGAGGAACTGGCCGATCAGGCTCGATTCGCCGGGCACAACTTCAGAAACC
8
A_15_P265286
FALSE
ZDHHC5 (2 of 2)
Dr.110123
ENSDARG00000087417
zinc finger, DHHC-type containing 5 [Source:HGNC Symbol;Acc:HGNC:18472]
TAGCTATAAAAGTTTAGCCAATCAGACGCGCAACGGCAGTCTGTCTTATGAGAGTCTGCT
9
A_15_P115643
FALSE
rbm14a
Dr.77963
ENSDARG00000012723
RNA binding motif protein 14a [Source:ZFIN;Acc:ZDB-GENE-050522-496]
AGGGATGGGGAATGTAAAACCTGAAGTGTAGTTAGTTAATTCCAAGAGTGAAAAACCGTG
10
A_15_P242711
FALSE
GACACTCTGATAGTTATTAAACACTCAGTGAGCTGCTTATTAGTAATGAAACAGACTTTC
11
A_15_P119001
FALSE
CCGCTGGGAGGGCTGTCAGACATGCCATCACAGAAGAATTTTTCATGCAACATTCAATAA
12
A_15_P693526
FALSE
CCTAACCTGCCTAATTAACCTAATTAATCTAGCTAAGCCTTTAAATGTCACTTTAAGCTG
13
A_15_P599312
FALSE
ATTTTTGACCCGTTTTGTGGGCAGGATGATTGGATTTCTCATCTGACATCCCTGCTGTTT
14
A_15_P202876
FALSE
NM_001128712
pcgf5a
Dr.134043
ENSDARG00000071007
polycomb group ring finger 5a [Source:ZFIN;Acc:ZDB-GENE-080723-33]
TGTTTTGTGTAACGGTGAGATTATGGGTAAAGATCACACCCTGGAGTTCATCTACCGAAC
15
A_15_P706254
FALSE
myh10
Dr.156326
ENSDARG00000000103
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
ACGTCTCTCCTCTTGTTTTTCCTCTTGTATACTGTAACTATTTCTAGATGACAGTGAGTT
16
A_15_P591727
FALSE
TTTGTGTTCGACCCAAAGAAGATGACTCCAGAAGAGTTCTTCGGTGACCTCAACAACTTC
17
A_15_P272321
FALSE
NM_001037122
ppifb
Dr.85565
ENSDARG00000052842
peptidylprolyl isomerase Fb [Source:ZFIN;Acc:ZDB-GENE-051030-126]
ACACACACACACACACAGTGTCAGACTGCTGGACAGATAATGTGAATGCTCTGGGTTAAA
18
A_15_P114064
FALSE
NM_212804
insig2
Dr.81348
ENSDARG00000037203
insulin induced gene 2 [Source:ZFIN;Acc:ZDB-GENE-040202-1]
ACAGCAAAAGTGCCAAACAGACTCTCACGGCCGAGAGCGAAGCCTGTTCATCCGCACACA
19
A_15_P678756
FALSE
FAM72B
Dr.90299
ENSDARG00000070621
family with sequence similarity 72, member B [Source:HGNC Symbol;Acc:HGNC:24805]
GGCTCTTTTTATGCCTTGAAGCGAACTTTAGTATGCATTTATGACCAAAATGAGATGAAA
20
A_15_P741981
FALSE
si:dkey-261h17.1
ENSDARG00000095268
si:dkey-261h17.1 [Source:ZFIN;Acc:ZDB-GENE-030829-14]
GGGTTTGGTGCCAAGCCTCCCTTTAAAACAAAATGAAATCGTATAAAGTTCCACGAATTA
Total number of rows: 62976 Table truncated, full table size 10049 Kbytes .
Supplementary data files not provided