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Status
Public on Jul 22, 2016
Title
Agilent-042004 gallus_exp_microarray_SLagarrigue_8x60k_V2_july2012
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Gallus gallus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16042004 or 2542004. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The FeatureNum column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Contributor(s)
Lagarrigue S
Submission date
Jan 12, 2015
Last update date
Aug 29, 2017
Contact name
Colette DESERT
E-mail(s)
colette.desert@agrocampus-ouest.fr
Organization name
Agrocampus INRA UMR1348 PEGASE
Street address
65 Rue de St Brieuc
City
Rennes
ZIP/Postal code
35042
Country
France
Samples (210)
GSM1592589 , GSM1592590 , GSM1592591 , GSM1592592 , GSM1592593 , GSM1592594
GSM1592595 ,
GSM1592596 ,
GSM2735425 ,
GSM2735426 ,
GSM2735427 ,
GSM2735428 ,
GSM2735429 ,
GSM2735430 ,
GSM2735431 ,
GSM2735432 ,
GSM2735433 ,
GSM2735434 ,
GSM2735435 ,
GSM2735436 ,
GSM2735437 ,
GSM2735438 ,
GSM2735439 ,
GSM2735440 ,
GSM2735441 ,
GSM2735442 ,
GSM2735443 ,
GSM2735444 ,
GSM2735445 ,
GSM2735446 ,
GSM2735447 ,
GSM2735448 ,
GSM2788094 ,
GSM2788095 ,
GSM2788096 ,
GSM2788097 ,
GSM2788098 ,
GSM2788099 ,
GSM2788100 ,
GSM2788101 ,
GSM2788102 ,
GSM2788103 ,
GSM2788104 ,
GSM2788105 ,
GSM2788106 ,
GSM2788107 ,
GSM2788108 ,
GSM2788109 ,
GSM2788110 ,
GSM2788111 ,
GSM2788112 ,
GSM2788113 ,
GSM2788114 ,
GSM2788115 ,
GSM2788116 ,
GSM2788117 ,
GSM2788118 ,
GSM2788119 ,
GSM2788120 ,
GSM2788121 ,
GSM2788122 ,
GSM2788123 ,
GSM2788124 ,
GSM2788125 ,
GSM2788126 ,
GSM2788127 ,
GSM2788128 ,
GSM2788129 ,
GSM2788130 ,
GSM2788131 ,
GSM2788132 ,
GSM2788133 ,
GSM2788134 ,
GSM2788135 ,
GSM2788136 ,
GSM2788137 ,
GSM2788138 ,
GSM2788139 ,
GSM2788140 ,
GSM2788141 ,
GSM2788142 ,
GSM2788143 ,
GSM2788144 ,
GSM2788145 ,
GSM2788146 ,
GSM2788147 ,
GSM2788148 ,
GSM2788149 ,
GSM2788150 ,
GSM2788151 ,
GSM2788152 ,
GSM2788153 ,
GSM2788154 ,
GSM2788155 ,
GSM2788156 ,
GSM2788157 ,
GSM2788158 ,
GSM2788159 ,
GSM2788160 ,
GSM2788161 ,
GSM2788162 ,
GSM2788163 ,
GSM2788164 ,
GSM2788165 ,
GSM2788166 ,
GSM2788167 ,
GSM2788168 ,
GSM2788169 ,
GSM2788170 ,
GSM2788171 ,
GSM2788172 ,
GSM2788173 ,
GSM2788174 ,
GSM2788175 ,
GSM2788176 ,
GSM2788177 ,
GSM2788178 ,
GSM2788179 ,
GSM2788180 ,
GSM2788181 ,
GSM2788182 ,
GSM2788183 ,
GSM2788184 ,
GSM2788185 ,
GSM2788186 ,
GSM2788187 ,
GSM2788188 ,
GSM2788189 ,
GSM2788190 ,
GSM2788191 ,
GSM2788192 ,
GSM2788193 ,
GSM2788194 ,
GSM2788195 ,
GSM2788196 ,
GSM2788197 ,
GSM2788198 ,
GSM2788199 ,
GSM2788200 ,
GSM2788201 ,
GSM2788202 ,
GSM2788203 ,
GSM2788204 ,
GSM2788205 ,
GSM2788206 ,
GSM2788207 ,
GSM2788208 ,
GSM2788209 ,
GSM2788210 ,
GSM2788211 ,
GSM2788212 ,
GSM2788213 ,
GSM2788214 ,
GSM2788215 ,
GSM2788216 ,
GSM2788217 ,
GSM2788218 ,
GSM2788219 ,
GSM2788220 ,
GSM2788221 ,
GSM2788222 ,
GSM2788223 ,
GSM2788224 ,
GSM2788225 ,
GSM2788226 ,
GSM2788227 ,
GSM2788228 ,
GSM2788229 ,
GSM2788230 ,
GSM2788231 ,
GSM2788232 ,
GSM2788233 ,
GSM2788234 ,
GSM2788235 ,
GSM2788236 ,
GSM2788237 ,
GSM2788238 ,
GSM2788239 ,
GSM2788240 ,
GSM2788241 ,
GSM2788242 ,
GSM2788243 ,
GSM2788244 ,
GSM2788245 ,
GSM2788246 ,
GSM2788247 ,
GSM2788248 ,
GSM2788249 ,
GSM2788250 ,
GSM2788251 ,
GSM2788252 ,
GSM2788253 ,
GSM2788254 ,
GSM2788255 ,
GSM2788256 ,
GSM2788257 ,
GSM2788258 ,
GSM2788259 ,
GSM2788260 ,
GSM2788261 ,
GSM2788262 ,
GSM2788263 ,
GSM2788264 ,
GSM2788265 ,
GSM2788266 ,
GSM2788267 ,
GSM2788268 ,
GSM2788269 ,
GSM2788270 ,
GSM2788271
Series (7)
GSE65331
Transcriptomes of whole blood and PBMC in chickens.
GSE102358
Spontaneous intake of essential oils after a negative postnatal experience has long-term effects on blood transcriptome in chickens
GSE104038
Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet [Liver]
GSE104039
Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet [Adipose tissue]
GSE104040
Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet [Muscle]
GSE104041
Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet [PBMC]
GSE104042
Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet
Data table header descriptions
ID
Agilent feature number
CONTROL_TYPE
Gene_ID
Gene_ID_Accession
GB_ACC
GenBank Accession number
Gene_symbol
Gene Symbol
GENE_NAME
Gene Name
DESCRIPTION
Description
SEQUENCE
Sequence
ProbeName
unicID_noControl
SPOT_ID
CONTROL_TYPE Control type
Data table
ID
CONTROL_TYPE
Gene_ID
GB_ACC
Gene_symbol
GENE_NAME
DESCRIPTION
SEQUENCE
ProbeName
unicID_noControl
SPOT_ID
1
pos
GE_BrightCorner
CONTROL
2
pos
DarkCorner
CONTROL
3
pos
DarkCorner
CONTROL
4
FALSE
ENSGALG00000012377
HNMT
GAGAACAGAAATGGGAAGGTGATTTTTAATAACAGCATGAGTGTAATAATGATTGAGCCC
seq_RIGG02544
ID_1
5
FALSE
ENSGALG00000004460
FOXK1
forkhead box K1
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NSF2] [ENSGALT00000040858]
CGCATTGACCCTGCCTCTGAAGCTAAACTAGTAGAGCAAGCATTTAGAAAACGAAGGCAA
A_87_P009088
ID_2
6
FALSE
ENSGALG00000013124
FHOD3
TAGGAAGTCATTGAGAAGGACACTAAAGAGCGGACTGACACCAGAAGAAGCCAAAGCATT
T021422_G013124_FHOD3_420952
ID_3
7
FALSE
ENSGALG00000014687
EPHA1
EPH receptor A1
Gallus gallus EPH receptor A1 (EPHA1), mRNA [NM_204360]
ATTGGAGAATGATGCAGAGGGAACATATGAAACCAAGGGTGGTAAGATTCCCATCCGATG
A_87_P108488
ID_4
8
FALSE
ENSGALG00000017219
C11orf54
chromosome 1 open reading frame, human C11orf54
chromosome 11 open reading frame 54 [Source:HGNC Symbol;Acc:30204] [ENSGALT00000027832]
GTAACTGAAGGGCTTATGGCTGAATTTGAGCCGTAATTTTCATTAAACCATTACTAATGC
A_87_P113528
ID_5
9
FALSE
ENSGALG00000001030
SCAMP4
TTTTGCTCCTTTTATCATTATCTGAAAAGGTCATTTGCATTCCCCTCCGTACGCTCCGCT
T001527_G001030_SCAMP4_420081
ID_6
10
FALSE
ENSGALG00000008009
BCAP29
B-cell receptor-associated protein 29
Gallus gallus B-cell receptor-associated protein 29 (BCAP29), mRNA [NM_001097645]
ATGCACTGCTGGTCACAATCCAGATTCCACTAACATATCTTGGCTGCCAGTATATTATTT
A_87_P023872
ID_7
11
FALSE
ENSGALG00000024289
ATTGTGTTTGGTTGTAATTCCCCTTCTGGCTCTCTGCTCACTGGAATATTATGCCCAGTC
T041025_G024289
ID_8
12
FALSE
GB
CCGACGGCGGGGAGCTCGACCCCGTTCCGCCCGTACGCCGTGGAAACCCCCCTGGCGTAA
A_87_P302543
ID_9
13
FALSE
ENSGALG00000006706
USP6NL
USP6 N-terminal like
Gallus gallus USP6 N-terminal like (USP6NL), mRNA [NM_001030840]
ACGATGGTTCTGTAATTCATAACAAAGCTGTACAATTTATTTGTGCAAGCAACACAAAGC
A_87_P051791
ID_10
14
FALSE
ENSGALG00000002119
C16orf62
chromosome 14 open reading frame, human C16orf62
chromosome 16 open reading frame 62 [Source:HGNC Symbol;Acc:24641] [ENSGALT00000003310]
TATGCAGAGTATTCTATATTCTCTAGCACGCTATATCACTGAATAAAGCAGTTTGCAGCT
A_87_P072371
ID_11
15
FALSE
GB
ATCCTGTCAAGCTGCGTCCGAAGGGAACGGTTTCTCACGGGCCAGCTGAAGGACGAGGCA
A_87_P302673
ID_12
16
FALSE
ENSGALG00000019445
COX6C
cytochrome c oxidase subunit VIc
Gallus gallus finished cDNA, clone ChEST922c3. [CR390196]
TGTTTCACTTCTGTTTGCCACATGAAGGGTGTGTGAATCTTAAACTGTCAGGAAATAACA
A_87_P014310
ID_13
17
FALSE
AGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCC
T040139_G023883
ID_14
18
FALSE
ENSGALG00000004363
MCM3AP
minichromosome maintenance complex component 3 associated protein
minichromosome maintenance complex component 3 associated protein [Source:HGNC Symbol;Acc:6946] [ENSGALT00000006957]
TTATAGAAATGCAGGTAAGGATACTGCTAATGGGAGGAGTTAGAGAATCATTCTGTGGGC
A_87_P081871
ID_15
19
FALSE
ENSGALG00000023768
EPHA2
EPH receptor A2
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NP16] [ENSGALT00000030487]
CCGGCATCCCTCCCACCTTCCGCTTTATTTATTATTTTTTGAGGTTGTTGTTGTTGTTGT
A_87_P065696
ID_16
20
FALSE
ENSGALG00000013026
CECR5
cat eye syndrome chromosome region, candidate 5
cat eye syndrome chromosome region, candidate 5 [Source:HGNC Symbol;Acc:1843] [ENSGALT00000021270]
TACATAGTGCAGGATGTGAATGAAGCTGTGCTACTTGCTTTTGAGAAGGAGAACTGGAGT
A_87_P107838
ID_17
Total number of rows: 62976 Table truncated, full table size 11707 Kbytes .
Supplementary data files not provided