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Platform GPL19630 Query DataSets for GPL19630
Status Public on Jul 22, 2016
Title Agilent-042004 gallus_exp_microarray_SLagarrigue_8x60k_V2_july2012
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Gallus gallus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16042004 or 2542004.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The FeatureNum column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Contributor(s) Lagarrigue S
Submission date Jan 12, 2015
Last update date Aug 29, 2017
Contact name Colette DESERT
E-mail(s) colette.desert@agrocampus-ouest.fr
Organization name Agrocampus INRA UMR1348 PEGASE
Street address 65 Rue de St Brieuc
City Rennes
ZIP/Postal code 35042
Country France
 
Samples (210) GSM1592589, GSM1592590, GSM1592591, GSM1592592, GSM1592593, GSM1592594 
Series (7)
GSE65331 Transcriptomes of whole blood and PBMC in chickens.
GSE102358 Spontaneous intake of essential oils after a negative postnatal experience has long-term effects on blood transcriptome in chickens
GSE104038 Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet [Liver]

Data table header descriptions
ID Agilent feature number
CONTROL_TYPE
Gene_ID Gene_ID_Accession
GB_ACC GenBank Accession number
Gene_symbol Gene Symbol
GENE_NAME Gene Name
DESCRIPTION Description
SEQUENCE Sequence
ProbeName
unicID_noControl
SPOT_ID CONTROL_TYPE Control type

Data table
ID CONTROL_TYPE Gene_ID GB_ACC Gene_symbol GENE_NAME DESCRIPTION SEQUENCE ProbeName unicID_noControl SPOT_ID
1 pos GE_BrightCorner CONTROL
2 pos DarkCorner CONTROL
3 pos DarkCorner CONTROL
4 FALSE ENSGALG00000012377 HNMT GAGAACAGAAATGGGAAGGTGATTTTTAATAACAGCATGAGTGTAATAATGATTGAGCCC seq_RIGG02544 ID_1
5 FALSE ENSGALG00000004460 FOXK1 forkhead box K1 Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NSF2] [ENSGALT00000040858] CGCATTGACCCTGCCTCTGAAGCTAAACTAGTAGAGCAAGCATTTAGAAAACGAAGGCAA A_87_P009088 ID_2
6 FALSE ENSGALG00000013124 FHOD3 TAGGAAGTCATTGAGAAGGACACTAAAGAGCGGACTGACACCAGAAGAAGCCAAAGCATT T021422_G013124_FHOD3_420952 ID_3
7 FALSE ENSGALG00000014687 EPHA1 EPH receptor A1 Gallus gallus EPH receptor A1 (EPHA1), mRNA [NM_204360] ATTGGAGAATGATGCAGAGGGAACATATGAAACCAAGGGTGGTAAGATTCCCATCCGATG A_87_P108488 ID_4
8 FALSE ENSGALG00000017219 C11orf54 chromosome 1 open reading frame, human C11orf54 chromosome 11 open reading frame 54 [Source:HGNC Symbol;Acc:30204] [ENSGALT00000027832] GTAACTGAAGGGCTTATGGCTGAATTTGAGCCGTAATTTTCATTAAACCATTACTAATGC A_87_P113528 ID_5
9 FALSE ENSGALG00000001030 SCAMP4 TTTTGCTCCTTTTATCATTATCTGAAAAGGTCATTTGCATTCCCCTCCGTACGCTCCGCT T001527_G001030_SCAMP4_420081 ID_6
10 FALSE ENSGALG00000008009 BCAP29 B-cell receptor-associated protein 29 Gallus gallus B-cell receptor-associated protein 29 (BCAP29), mRNA [NM_001097645] ATGCACTGCTGGTCACAATCCAGATTCCACTAACATATCTTGGCTGCCAGTATATTATTT A_87_P023872 ID_7
11 FALSE ENSGALG00000024289 ATTGTGTTTGGTTGTAATTCCCCTTCTGGCTCTCTGCTCACTGGAATATTATGCCCAGTC T041025_G024289 ID_8
12 FALSE GB CCGACGGCGGGGAGCTCGACCCCGTTCCGCCCGTACGCCGTGGAAACCCCCCTGGCGTAA A_87_P302543 ID_9
13 FALSE ENSGALG00000006706 USP6NL USP6 N-terminal like Gallus gallus USP6 N-terminal like (USP6NL), mRNA [NM_001030840] ACGATGGTTCTGTAATTCATAACAAAGCTGTACAATTTATTTGTGCAAGCAACACAAAGC A_87_P051791 ID_10
14 FALSE ENSGALG00000002119 C16orf62 chromosome 14 open reading frame, human C16orf62 chromosome 16 open reading frame 62 [Source:HGNC Symbol;Acc:24641] [ENSGALT00000003310] TATGCAGAGTATTCTATATTCTCTAGCACGCTATATCACTGAATAAAGCAGTTTGCAGCT A_87_P072371 ID_11
15 FALSE GB ATCCTGTCAAGCTGCGTCCGAAGGGAACGGTTTCTCACGGGCCAGCTGAAGGACGAGGCA A_87_P302673 ID_12
16 FALSE ENSGALG00000019445 COX6C cytochrome c oxidase subunit VIc Gallus gallus finished cDNA, clone ChEST922c3. [CR390196] TGTTTCACTTCTGTTTGCCACATGAAGGGTGTGTGAATCTTAAACTGTCAGGAAATAACA A_87_P014310 ID_13
17 FALSE AGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCC T040139_G023883 ID_14
18 FALSE ENSGALG00000004363 MCM3AP minichromosome maintenance complex component 3 associated protein minichromosome maintenance complex component 3 associated protein [Source:HGNC Symbol;Acc:6946] [ENSGALT00000006957] TTATAGAAATGCAGGTAAGGATACTGCTAATGGGAGGAGTTAGAGAATCATTCTGTGGGC A_87_P081871 ID_15
19 FALSE ENSGALG00000023768 EPHA2 EPH receptor A2 Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NP16] [ENSGALT00000030487] CCGGCATCCCTCCCACCTTCCGCTTTATTTATTATTTTTTGAGGTTGTTGTTGTTGTTGT A_87_P065696 ID_16
20 FALSE ENSGALG00000013026 CECR5 cat eye syndrome chromosome region, candidate 5 cat eye syndrome chromosome region, candidate 5 [Source:HGNC Symbol;Acc:1843] [ENSGALT00000021270] TACATAGTGCAGGATGTGAATGAAGCTGTGCTACTTGCTTTTGAGAAGGAGAACTGGAGT A_87_P107838 ID_17

Total number of rows: 62976

Table truncated, full table size 11707 Kbytes.




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