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Platform GPL19697 Query DataSets for GPL19697
Status Public on Jan 26, 2015
Title Combimatrix B. thuringiensis sv konkukian str. 97-27 4.5k array
Technology type in situ oligonucleotide
Distribution non-commercial
Organism [Bacillus thuringiensis] serovar konkukian str. 97-27
Manufacturer Università Cattolica del Sacro Cuore, Piacenza and Cremona, Italy
Manufacture protocol Probes are directly synthesized on a 12k Combimatrix array by an in situ oligo synthesis system developed by Combimatrix Corporation (Mukilteo, USA) using the Combimatrix CustomArray synthesizer. Standard synthesis protocol provided by Combimatrix was used. See manufacturer's website at http://www.combimatrix.com/docs/
 
Description Combimatrix Bacillus cereus sensu latu group germination and outgrowth in food model
Complete genome sequence of B. thuringiensis sv konkukian str. 97-27 (NCBI Reference Sequence: NC_005957.1) was chosen for its high homology with B. cereus s.l. UC10070, to design probes corresponding to 5,197 genes spotted in duplicates onto ElectraSenseH 12K microarrays chip.
 
Submission date Jan 23, 2015
Last update date Jan 26, 2015
Contact name Daniela Bassi
E-mail(s) daniela.bassi@unicatt.it
Phone +390372499108
Organization name Università Cattolica del Sacro Cuore
Department Istituto di Microbiologia
Lab CRB
Street address via Milano 24
City Cremona
State/province CR
ZIP/Postal code 26100
Country Italy
 
Samples (12) GSM1591003, GSM1591004, GSM1591005, GSM1591006, GSM1591007, GSM1591008 
Series (1)
GSE65259 Study of Bacillus cereus spore germination and outgrowth in a vegetable food model by means of genome-wide transcriptome analysis

Data table header descriptions
ID
NAME
ORF ORF Name
SEQUENCE
DESCRIPTION

Data table
ID NAME ORF SEQUENCE DESCRIPTION
637511347_1230_35_S 637511347 BT9727_0001 TGGACGTGATCATACAACCGTTATCCATGCCCATG chromosomal replication initiation protein 409..1749(+)
637511348_1060_40_S 637511348 BT9727_0002 GGAGCAATGAGACCATTCTTAATTCGTACGGTAAATGATG DNA polymerase III subunit beta 1928..3067(+)
637511351_1864_37_S 637511351 BT9727_0005 GAGCCACGTCGTAACTTTATCCAAGAAAATGCAAAAT DNA topoisomerase IV subunit B 4586..6508(+)
637511352_2386_37_S 637511352 BT9727_0006 GAGGATGAGCAAGAGGTAGCGACAGTAGCAAAAGCAC DNA gyrase subunit A 6597..9068(+)
637511358_870_40_S 637511358 BT9727_0008 TGATTTACTTGGAAGCTATGGATCTGAAGATTACCCCTTT hypothetical protein 14358..15359(-)
637511359_1420_40_S 637511359 BT9727_0009 CATCACGTACAAATTACAAAAGAGGCTCCAAACTACTCAT inositol-5-monophosphate dehydrogenase 15475..16938(+)
637511360_1250_40_S 637511360 BT9727_0010 GCGGAATTGGTTCTTTCTTTAGTGGTATATGGAATAGTGC serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) 17043..18359(+)
637511361_844_35_S 637511361 BT9727_0011 TCAACGTTATTACCAGAACAACGCATGCAAGAGCG pyridoxine biosynthesis protein 18521..19408(+)
637511362_522_39_S 637511362 BT9727_0012 GGATGATCATCGTGTAACAGCATACTTTGTAGAAATGGT GMP synthase, glutamine-hydrolyzing (glutamine amidotransferase) 19427..20017(+)
637511363_1207_40_S 637511363 BT9727_0013 GAAGATGGTACAATTATAATTCCAGAAGTTCTTCGCCCTT seryl-tRNA synthetase 20345..21619(+)
637511365_507_40_S 637511365 BT9727_0014 TGGAAAATCTGAGAGTGAAATTATTGCTCCGACAAAGAAG hypothetical protein 21876..22427(+)
637511366_504_38_S 637511366 BT9727_0015 AGAGATGCATGGGCGTTATGAAAACTGGATTAATAACT deoxynucleoside kinase 22463..23131(-)
637511367_594_40_S 637511367 BT9727_0016 CCTATCTGCCCTTCAAAATACTCTCTTAAAGGAGTCGAAA deoxyguanosine kinase 23134..23769(-)
637511368_441_36_S 637511368 BT9727_0017 CGCCTCTAATCATGATCAAGATAACCTGCATGCTTT nicotinamidase (pyrazinamidase) 23895..24434(-)
637511370_1643_37_S 637511370 BT9727_0019 AGGCCGTAAAATTAGTAGGGCAAGAACTCATTGAAAT DNA polymerase III subunits gamma and tau 25519..27207(+)
637511371_295_36_S 637511371 BT9727_0020 ACAAAAGGCTTAAACTTACCGGGTGGAATGTTCTAG hypothetical protein 27230..27559(+)
637511372_561_37_S 637511372 BT9727_0021 ACTGTCGAAAGCGTTAGAAGGTCGTAGAGAAGTATAA recombination protein RecR 27574..28170(+)
637511373_188_35_S 637511373 BT9727_0022 CGAAACGTCGTCCTGTAAAGATGGAACAATGGTAA hypothetical protein 28185..28406(+)
637511374_229_38_S 637511374 BT9727_0023 GCTGCATTGGTGGTTATTAAGCTTTACATTATGCCAAG sigma-K factor processing regulatory protein 28622..28891(+)
637511380_1360_39_S 637511380 BT9727_0025 GGTGCTCGTTTTCAAGGTAGCACGAAATATATGAAAGTG lysine decarboxylase 34566..35987(+)

Total number of rows: 4464

Table truncated, full table size 573 Kbytes.




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