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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 21, 2005 |
| Title |
AtTile1F to Arabidopsis Tiling 1.0F |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Arabidopsis thaliana |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
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| Description |
Affymetrix Whole Genome Tiling Array Chip designed by the Salk Institute and Affymetrix.
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| Web link |
http://signal.salk.edu/
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| Contributor(s) |
Chen H, Yazaki J, Ecker JR |
| Submission date |
Apr 20, 2005 |
| Last update date |
Sep 04, 2008 |
| Contact name |
Joseph R. Ecker |
| E-mail(s) |
ecker@salk.edu
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| Phone |
1-858-453-4100 x 1975
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| URL |
http://signal.salk.edu/
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| Organization name |
The Salk Institute
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| Department |
Genomic Analysis Laboratory
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| Lab |
Joseph R. Ecker
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| Street address |
10010 N. Torrey Pines Road
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
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| Samples (221)
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GSM113610, GSM114158, GSM114160, GSM114162, GSM114164, GSM114166
GSM114168, GSM114170, GSM114172, GSM114725, GSM114726, GSM114727, GSM114728, GSM114729, GSM114730, GSM114731, GSM114732, GSM114733, GSM114734, GSM114735, GSM114736, GSM114737, GSM114738, GSM114739, GSM114740, GSM114741, GSM114742, GSM114743, GSM114744, GSM114745, GSM114746, GSM114747, GSM114748, GSM151737, GSM151742, GSM151743, GSM151744, GSM161928, GSM161973, GSM161978, GSM161982, GSM161995, GSM161997, GSM161999, GSM162001, GSM162003, GSM162004, GSM162005, GSM162006, GSM162007, GSM162008, GSM162009, GSM162010, GSM194555, GSM194556, GSM194557, GSM194558, GSM194559, GSM194560, GSM194561, GSM194562, GSM194563, GSM194564, GSM194565, GSM194566, GSM194567, GSM194568, GSM194569, GSM194570, GSM194571, GSM194572, GSM194573, GSM194574, GSM194575, GSM194576, GSM194577, GSM194578, GSM202243, GSM202244, GSM202245, GSM202246, GSM202247, GSM202248, GSM202249, GSM202250, GSM207767, GSM207769, GSM207770, GSM207771, GSM207772, GSM207773, GSM207774, GSM207775, GSM207776, GSM207777, GSM207778, GSM207779, GSM225170, GSM225172, GSM225195, GSM225197, GSM225199, GSM225207, GSM225235, GSM225236, GSM225237, GSM225238, GSM225239, GSM225240, GSM225241, GSM225242, GSM225243, GSM225244, GSM225245, GSM225246, GSM225248, GSM225249, GSM225267, GSM225268, GSM225269, GSM225270, GSM225272, GSM225273, GSM225274, GSM225275, GSM225277, GSM225278, GSM225279, GSM225281, GSM225282, GSM225284, GSM225285, GSM225287, GSM225290, GSM225292, GSM225295, GSM225297, GSM225300, GSM225301, GSM225305, GSM225308, GSM225310, GSM225312, GSM225313, GSM225314, GSM237317, GSM237318, GSM237319, GSM237320, GSM237321, GSM237322, GSM237323, GSM237324, GSM237325, GSM237326, GSM237327, GSM237328, GSM237329, GSM237330, GSM237331, GSM237332, GSM237333, GSM237334, GSM237335, GSM237336, GSM237337, GSM237338, GSM237339, GSM237340, GSM237341, GSM237343, GSM237344, GSM237345, GSM237346, GSM237347, GSM237348, GSM237349, GSM279165, GSM279166, GSM279646, GSM279647, GSM279648, GSM279664, GSM279693, GSM279694, GSM343172, GSM343173, GSM343174, GSM343175, GSM343176, GSM343177, GSM343178, GSM343179, GSM343180, GSM343181, GSM343183, GSM343185, GSM343188, GSM343192, GSM343257, GSM343258, GSM343299, GSM343334, GSM343335, GSM343336, GSM343455, GSM343795, GSM343796, GSM343797, GSM343798, GSM343799, GSM343800, GSM343801, GSM466433, GSM466447, GSM466454, GSM466464, GSM466473, GSM466483, GSM627259, GSM627260
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| Series (19)
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| GSE5074 |
High Resolution Mapping and Functional Analysis of the Methylome in Arabidopsis (polyA RNA) |
| GSE5094 |
High Resolution Mapping and Functional Analysis of the Methylome in Arabidopsis (mCIP, MBD) |
| GSE6562 |
arabidopsis accession columbia 78h old whole seedling expression |
| GSE7062 |
H3 ChIP-chip |
| GSE7063 |
Input DNA |
| GSE7064 |
H3K27me3 ChIP-chip |
| GSE7065 |
CLF Pulldown |
| GSE7093 |
Trimethylation of histone H3 lysine27 (H3K27me3) in Arabidopsis |
| GSE7907 |
Histone H3 modifications ChIP on chip |
| GSE8169 |
The Arabidopsis chromodomain-containing LHP1 colocalizes with histone H3 lysine27 trimethylation |
| GSE8392 |
Genome-Wide Expression Profiling of the Arabidopsis Female Gametophyte Identifies Families of Small, Secreted Proteins |
| GSE8890 |
CG Methylation of Col, Van and reciprocal hybrids using HpaII and MspI digestion |
| GSE8891 |
Gene expression of Col, Van and reciprocal hybrids |
| GSE9317 |
Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome |
| GSE11070 |
A link between RNA metabolism and silencing affecting Arabidopsis development |
| GSE13620 |
Genomic hybridization of Col, Van and reciprocal hybrids |
| GSE13814 |
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays |
| GSE18808 |
A methyl transferase links the circadian clock to the regulation of alternative splicing |
| GSE25509 |
Becker_etal_SNParray_BSA |
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| Data table header descriptions |
| ID |
unique id; derived from perfect match chip coordinate, chromosome, and range start |
| SEQUENCE |
Oligo probe sequence |
| Chromosome |
Arabidopsis chromosome |
| RANGE_START |
start position of mapped probe relative to RANGE_GB |
| RANGE_END |
end position of mapped probe relative to RANGE_GB |
| RANGE_GB |
chromosome accession and version upon which probes are mapped |
| RANGE_STRAND |
chromosomal strand |
| PROBE |
PerfectMatch (PM) or MisMatch (MM) probe |
| Data table |
| ID |
SEQUENCE |
Chromosome |
RANGE_START |
RANGE_END |
RANGE_GB |
RANGE_STRAND |
PROBE |
| x1086_y1242_r2_Tag_2 |
GTGATAATTTCGACGAGGCGTTACA |
r2_Tag |
2 |
26 |
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+ |
PM |
| x1087_y1242_r2_Tag_2 |
GTGATAATTTCGTCGAGGCGTTACA |
r2_Tag |
2 |
26 |
|
+ |
MM |
| x1086_y1241_r2_Tag_10 |
TTCGACGAGGCGTTACATATTCTGA |
r2_Tag |
10 |
34 |
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+ |
PM |
| x1087_y1241_r2_Tag_10 |
TTCGACGAGGCGATACATATTCTGA |
r2_Tag |
10 |
34 |
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+ |
MM |
| x1098_y1234_r2_Tag_22 |
CAGTACATGGTAGTTCAGCCAATAG |
r2_Tag |
22 |
46 |
|
+ |
PM |
| x1099_y1234_r2_Tag_22 |
CAGTACATGGTACTTCAGCCAATAG |
r2_Tag |
22 |
46 |
|
+ |
MM |
| x1086_y1231_r2_Tag_28 |
ATGACGCGGAGTCAACCTGATAACC |
r2_Tag |
28 |
52 |
|
+ |
PM |
| x1087_y1231_r2_Tag_28 |
ATGACGCGGAGTGAACCTGATAACC |
r2_Tag |
28 |
52 |
|
+ |
MM |
| x1088_y1237_r2_Tag_34 |
TACGGCGGTTGACTTAGTTATGCGA |
r2_Tag |
34 |
58 |
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+ |
PM |
| x1089_y1237_r2_Tag_34 |
TACGGCGGTTGAGTTAGTTATGCGA |
r2_Tag |
34 |
58 |
|
+ |
MM |
| x1098_y1233_r2_Tag_36 |
TCAGCCAATAGATGCCTAGTACGCT |
r2_Tag |
36 |
60 |
|
+ |
PM |
| x1099_y1233_r2_Tag_36 |
TCAGCCAATAGAAGCCTAGTACGCT |
r2_Tag |
36 |
60 |
|
+ |
MM |
| x1088_y1236_r2_Tag_40 |
GGTTGACTTAGTTATGCGAGGTTCG |
r2_Tag |
40 |
64 |
|
+ |
PM |
| x1089_y1236_r2_Tag_40 |
GGTTGACTTAGTAATGCGAGGTTCG |
r2_Tag |
40 |
64 |
|
+ |
MM |
| x1102_y1246_r2_Tag_47 |
TGGTGGAGCTATATAAGCCGCTGTT |
r2_Tag |
47 |
71 |
|
+ |
PM |
| x1103_y1246_r2_Tag_47 |
TGGTGGAGCTATTTAAGCCGCTGTT |
r2_Tag |
47 |
71 |
|
+ |
MM |
| x1090_y1243_r2_Tag_51 |
CTAGTTATGGCGTCGGATTAGACCG |
r2_Tag |
51 |
75 |
|
+ |
PM |
| x1091_y1243_r2_Tag_51 |
CTAGTTATGGCGACGGATTAGACCG |
r2_Tag |
51 |
75 |
|
+ |
MM |
| x1084_y1246_r2_Tag_65 |
AACTTGTCGTATGGGACTTTCAAGT |
r2_Tag |
65 |
89 |
|
+ |
PM |
| x1085_y1246_r2_Tag_65 |
AACTTGTCGTATCGGACTTTCAAGT |
r2_Tag |
65 |
89 |
|
+ |
MM |
Total number of rows: 6184720
Table truncated, full table size 540032 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL1979.bpmap.gz |
67.6 Mb |
(ftp)(http) |
BPMAP |
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