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Status
Public on Apr 15, 2015
Title
NimbleGen C. elegans 120618_Cele_WS230_JK_CGH
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Caenorhabditis elegans Manufacturer
NimbleGen
Manufacture protocol
See manufacturer's website
Description
3-plex microarray with each individual sub-array comprising 720K 50-mer oligonucleotide probes sythesized at random positions on the array. Probe selection did not focus on coding regions to provide a more uniform coverage of the genome. Based on genome build Wormbase WS230.
Submission date
Apr 14, 2015
Last update date
Apr 06, 2018
Contact name
Ulfar Bergthorsson
E-mail(s)
ulfar@unm.edu Organization name
University of New Mexico
Department
Biology
Lab
Bergthorsson
Street address
219 Yale Blvd NE
City
Albuquerque
State/province
New Mexico
ZIP/Postal code
87131
Country
USA
Samples (82)
GSM1657435 , GSM1657436 , GSM1657437 , GSM1657438 , GSM1657439 , GSM1657440
GSM1657441 ,
GSM1657442 ,
GSM1657443 ,
GSM1657444 ,
GSM1657445 ,
GSM1657446 ,
GSM1657447 ,
GSM1657448 ,
GSM1657449 ,
GSM1657450 ,
GSM1657451 ,
GSM1657452 ,
GSM3084300 ,
GSM3084301 ,
GSM3084302 ,
GSM3084303 ,
GSM3084304 ,
GSM3084305 ,
GSM3084306 ,
GSM3084307 ,
GSM3084308 ,
GSM3084309 ,
GSM3084310 ,
GSM3084311 ,
GSM3084312 ,
GSM3084313 ,
GSM3084314 ,
GSM3084315 ,
GSM3084316 ,
GSM3084317 ,
GSM3084318 ,
GSM3084319 ,
GSM3084320 ,
GSM3084321 ,
GSM3084322 ,
GSM3084323 ,
GSM3084324 ,
GSM3084325 ,
GSM3084326 ,
GSM3084327 ,
GSM3084328 ,
GSM3084329 ,
GSM3084330 ,
GSM3084331 ,
GSM3084332 ,
GSM3084333 ,
GSM3084334 ,
GSM3084335 ,
GSM3084336 ,
GSM3084337 ,
GSM3084338 ,
GSM3084339 ,
GSM3084340 ,
GSM3084341 ,
GSM3084342 ,
GSM3084343 ,
GSM3084344 ,
GSM3084345 ,
GSM3084346 ,
GSM3084347 ,
GSM3084348 ,
GSM3084349 ,
GSM3084350 ,
GSM3084351 ,
GSM3084352 ,
GSM3084353 ,
GSM3084354 ,
GSM3084355 ,
GSM3084356 ,
GSM3084357 ,
GSM3084358 ,
GSM3084359 ,
GSM3084360 ,
GSM3084361 ,
GSM3084362 ,
GSM3084363 Series (2)
GSE67871 Rapid increase in frequency of gene copy-number variants during adaptive evolution in experimental Caenorhabditis elegans populations
GSE112821 Mutational and Transcriptional Landscape of Spontaneous Gene Duplications and Deletions in Caenorhabditis elegans
Data table header descriptions ID SEQ_ID CHROMOSOME POSITION COUNTS LENGTH GC SPOT_ID
Data table ID SEQ_ID CHROMOSOME POSITION COUNTS LENGTH GC SPOT_ID CHR100P00000503
I
chrI
503
1
50
0.48
CHR100P00000503
CHR100P00000512
I
chrI
512
1
50
0.44
CHR100P00000512
CHR100P00000519
I
chrI
519
1
50
0.5
CHR100P00000519
CHR100P00000527
I
chrI
527
1
50
0.48
CHR100P00000527
CHR100P00000533
I
chrI
533
1
50
0.44
CHR100P00000533
CHR100P00001257
I
chrI
1257
1
50
0.32
CHR100P00001257
CHR100P00001285
I
chrI
1285
1
50
0.36
CHR100P00001285
CHR100P00001318
I
chrI
1318
1
50
0.32
CHR100P00001318
CHR100P00001367
I
chrI
1367
1
50
0.3
CHR100P00001367
CHR100P00001376
I
chrI
1376
1
50
0.3
CHR100P00001376
CHR100P00001381
I
chrI
1381
1
50
0.3
CHR100P00001381
CHR100P00001386
I
chrI
1386
1
50
0.3
CHR100P00001386
CHR100P00003652
I
chrI
3652
1
50
0.4
CHR100P00003652
CHR100P00003758
I
chrI
3758
1
50
0.56
CHR100P00003758
CHR100P00003811
I
chrI
3811
1
50
0.52
CHR100P00003811
CHR100P00003816
I
chrI
3816
1
50
0.54
CHR100P00003816
CHR100P00003822
I
chrI
3822
1
50
0.54
CHR100P00003822
CHR100P00003827
I
chrI
3827
1
50
0.54
CHR100P00003827
CHR100P00003833
I
chrI
3833
1
50
0.56
CHR100P00003833
CHR100P00003994
I
chrI
3994
1
50
0.56
CHR100P00003994
719981 40990 Kbytes .Supplementary file Size Download File type/resource GPL20029_120618_Cele_WS230_JK_CGH.ndf.gz
30.1 Mb
(ftp) (http) NDF
GPL20029_120618_Cele_WS230_JK_CGH.pos.gz
4.7 Mb
(ftp) (http) POS
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