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Platform GPL2024 Query DataSets for GPL2024
Status Public on Nov 05, 2005
Title UCSF_HumArray
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
 
Description The arrays contain 2462 BAC clones printed as triplicate spots and are described in: Snijders AM, Nowak N, Segraves R, et al. Assembly of microarrays for genome-wide measurement of DNA copy number. Nature Genetics 2001; 29:263-264.
 
Citation(s) 11687795
Submission date May 05, 2005
Last update date Nov 05, 2005
Contact name Boris Bastian
E-mail(s) bastian@cc.ucsf.edu
Phone 415-476-5132
Fax 415-476-8218
URL http://www.cc.ucsf.edu/people/bastian_boris.html
Organization name UCSF Cancer Center
Department Laboratory Medicine
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143-0808
Country USA
 
Samples (142) GSM50516, GSM50517, GSM50518, GSM50519, GSM50520, GSM50521 
Series (2)
GSE2631 Distinct Sets of Genetic Alterations in Melanoma
GSE4747 Somatic Activation of KIT in Distinct Subtypes of Melanoma

Data table header descriptions
ID WellID: Unique Target Identifier
CLONE_ID clone name
Chrom chromosome (UCSC genome browser July 2003 freeze)
kb position in kilobases (UCSC genome browser July 2003 freeze)
MARKER.NAMES marker name contained in clone

Data table
ID CLONE_ID Chrom kb MARKER.NAMES
HumArray2H11_C9 RP11-82D16 1 2009 AFM214YG7;D1S243
HumArray2H10_N30 RP11-62M23 1 3368 AFM280WE5;D1S468
HumArray2H10_B18 RP11-111O5 1 4262 AFM123XC3;D1S2893
HumArray2H10_Q30 RP11-51B4 1 6069 AFM254WB9;D1S253
HumArray2H10_T30 RP11-60J11 1 6817 AFMA210XG9;D1S2663
HumArray2H10_B19 RP11-813J5 1 9498 A006Z42;p110D
HumArray2H10_W30 RP11-199O1 1 10284 AFM220YF4;D1S244
HumArray2H9_C14 RP11-188F7 1 12042 AFM217YH8;D1S434
HumArray2H9_F14 RP11-178M15 1 13349 AFM196XB4;D1S228
HumArray2H9_I14 RP11-219F4 1 14391 AFMA127ZC9;D1S507
HumArray2H9_A23 RP11-265F14 1 15121 AFM217ZC3
HumArray2H9_L14 RP11-145C4 1 18460 AFMA153XE9
HumArray2H9_O14 RP11-224F8 1 19980 AFM343ZA9;D1S2843
HumArray2H11_L8 CTD-2128D14 1 21392 M64788;RAP1GA1
HumArray2H9_B4 RP11-139H5 1 21963 AFM193XB12
HumArray2H9_U14 RP11-72I19 1 22834 AFM113XC7
HumArray2H9_R14 RP11-57F20 1 23269 AFM294ZD1;D1S482
HumArray2H9_X14 RP11-285H13 1 26900 AFMB291WB5;D1S2749
HumArray2H9_C17 RP11-4O6 1 27542 AFMA141ZB1
HumArray2H10_S36 CTD-2051J11 1 27543 sts-W81586;FGR

Total number of rows: 1957

Table truncated, full table size 99 Kbytes.






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Supplementary data files not provided

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