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Status
Public on Nov 05, 2005
Title
UCSF_HumArray
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens
Description
The arrays contain 2462 BAC clones printed as triplicate spots and are described in: Snijders AM, Nowak N, Segraves R, et al. Assembly of microarrays for genome-wide measurement of DNA copy number. Nature Genetics 2001; 29:263-264.
Citation(s)
11687795
Submission date
May 05, 2005
Last update date
Nov 05, 2005
Contact name
Boris Bastian
E-mail(s)
bastian@cc.ucsf.edu
Phone
415-476-5132
Fax
415-476-8218
URL
http://www.cc.ucsf.edu/people/bastian_boris.html
Organization name
UCSF Cancer Center
Department
Laboratory Medicine
Street address
City
San Francisco
State/province
CA
ZIP/Postal code
94143-0808
Country
USA
Samples (142)
GSM50516 , GSM50517 , GSM50518 , GSM50519 , GSM50520 , GSM50521
GSM50522 ,
GSM50523 ,
GSM50524 ,
GSM50525 ,
GSM50526 ,
GSM50527 ,
GSM50528 ,
GSM50529 ,
GSM50530 ,
GSM50531 ,
GSM50532 ,
GSM50533 ,
GSM50534 ,
GSM50535 ,
GSM50536 ,
GSM50537 ,
GSM50538 ,
GSM50539 ,
GSM50540 ,
GSM50541 ,
GSM50542 ,
GSM50543 ,
GSM50544 ,
GSM50545 ,
GSM50546 ,
GSM50547 ,
GSM50548 ,
GSM50549 ,
GSM50550 ,
GSM50551 ,
GSM50552 ,
GSM50553 ,
GSM50554 ,
GSM50555 ,
GSM50556 ,
GSM50557 ,
GSM50558 ,
GSM50559 ,
GSM50560 ,
GSM50561 ,
GSM50562 ,
GSM50563 ,
GSM50564 ,
GSM50565 ,
GSM50566 ,
GSM50567 ,
GSM50568 ,
GSM50569 ,
GSM50570 ,
GSM50571 ,
GSM50572 ,
GSM50573 ,
GSM50574 ,
GSM50575 ,
GSM50576 ,
GSM50577 ,
GSM50578 ,
GSM50579 ,
GSM50580 ,
GSM50581 ,
GSM50582 ,
GSM50583 ,
GSM50584 ,
GSM50585 ,
GSM50586 ,
GSM50587 ,
GSM50588 ,
GSM50589 ,
GSM50590 ,
GSM50591 ,
GSM50592 ,
GSM50593 ,
GSM50594 ,
GSM50595 ,
GSM50596 ,
GSM50597 ,
GSM50598 ,
GSM50599 ,
GSM50600 ,
GSM50601 ,
GSM50602 ,
GSM50603 ,
GSM50604 ,
GSM50605 ,
GSM50606 ,
GSM50607 ,
GSM50608 ,
GSM50609 ,
GSM50610 ,
GSM50611 ,
GSM50612 ,
GSM50613 ,
GSM50614 ,
GSM50615 ,
GSM50616 ,
GSM50617 ,
GSM50618 ,
GSM50619 ,
GSM50620 ,
GSM50621 ,
GSM50622 ,
GSM50623 ,
GSM50624 ,
GSM50625 ,
GSM50626 ,
GSM50627 ,
GSM50628 ,
GSM50629 ,
GSM50630 ,
GSM50631 ,
GSM50632 ,
GSM50633 ,
GSM50634 ,
GSM50635 ,
GSM50636 ,
GSM50637 ,
GSM50638 ,
GSM50639 ,
GSM50640 ,
GSM50641 ,
GSM126878 ,
GSM126879 ,
GSM126880 ,
GSM126881 ,
GSM126882 ,
GSM126883 ,
GSM126884 ,
GSM126885 ,
GSM126886 ,
GSM126887 ,
GSM126888 ,
GSM126889 ,
GSM126890 ,
GSM126891 ,
GSM126892 ,
GSM126893
Series (2)
GSE2631
Distinct Sets of Genetic Alterations in Melanoma
GSE4747
Somatic Activation of KIT in Distinct Subtypes of Melanoma
Data table header descriptions
ID
WellID: Unique Target Identifier
CLONE_ID
clone name
Chrom
chromosome (UCSC genome browser July 2003 freeze)
kb
position in kilobases (UCSC genome browser July 2003 freeze)
MARKER.NAMES
marker name contained in clone
Data table
ID
CLONE_ID
Chrom
kb
MARKER.NAMES
HumArray2H11_C9
RP11-82D16
1
2009
AFM214YG7;D1S243
HumArray2H10_N30
RP11-62M23
1
3368
AFM280WE5;D1S468
HumArray2H10_B18
RP11-111O5
1
4262
AFM123XC3;D1S2893
HumArray2H10_Q30
RP11-51B4
1
6069
AFM254WB9;D1S253
HumArray2H10_T30
RP11-60J11
1
6817
AFMA210XG9;D1S2663
HumArray2H10_B19
RP11-813J5
1
9498
A006Z42;p110D
HumArray2H10_W30
RP11-199O1
1
10284
AFM220YF4;D1S244
HumArray2H9_C14
RP11-188F7
1
12042
AFM217YH8;D1S434
HumArray2H9_F14
RP11-178M15
1
13349
AFM196XB4;D1S228
HumArray2H9_I14
RP11-219F4
1
14391
AFMA127ZC9;D1S507
HumArray2H9_A23
RP11-265F14
1
15121
AFM217ZC3
HumArray2H9_L14
RP11-145C4
1
18460
AFMA153XE9
HumArray2H9_O14
RP11-224F8
1
19980
AFM343ZA9;D1S2843
HumArray2H11_L8
CTD-2128D14
1
21392
M64788;RAP1GA1
HumArray2H9_B4
RP11-139H5
1
21963
AFM193XB12
HumArray2H9_U14
RP11-72I19
1
22834
AFM113XC7
HumArray2H9_R14
RP11-57F20
1
23269
AFM294ZD1;D1S482
HumArray2H9_X14
RP11-285H13
1
26900
AFMB291WB5;D1S2749
HumArray2H9_C17
RP11-4O6
1
27542
AFMA141ZB1
HumArray2H10_S36
CTD-2051J11
1
27543
sts-W81586;FGR
Total number of rows: 1957 Table truncated, full table size 99 Kbytes .
Supplementary data files not provided